BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3567.p         (178 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773616.1| ATP-dependent protease HslVU peptidase subun...   313   5e-84
ref|YP_004754690.1| ATP-dependent protease hslV [Collimonas fung...   310   8e-83
ref|YP_001354903.1| ATP-dependent protease peptidase subunit [Ja...   305   2e-81
ref|YP_001101197.1| ATP-dependent protease peptidase subunit [He...   304   4e-81
ref|ZP_04577782.1| ATP-dependent protease peptidase subunit [Oxa...   287   5e-76

>ref|YP_003773616.1| ATP-dependent protease HslVU peptidase subunit [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ61708.1| ATP-dependent protease HslVU (ClpYQ), peptidase subunit heat shock
           protein [Herbaspirillum seropedicae SmR1]
          Length = 178

 Score =  313 bits (803), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 173/178 (97%), Positives = 178/178 (100%)

Query: 1   MEQFHGTTILSVRRGNQVALGGDGQVTLGNIVMKGSARKVRKLYHGKVLVGFAGGTADAF 60
           MEQFHGTTILSVRRGNQVALGGDGQVTLGNIVMKGSARKVRKLYHGKVLVGFAGGTADAF
Sbjct: 1   MEQFHGTTILSVRRGNQVALGGDGQVTLGNIVMKGSARKVRKLYHGKVLVGFAGGTADAF 60

Query: 61  TLLDLFEAKLEKHQGNLMRASVELAKDWRTDRMLRRLEAMLLCADRDTTLVITGNGDVLE 120
           TLL+LFEAKLEKHQGNLMRASVELAKDWRTDRMLRRLEAMLLCAD++TTLVITGNGDVLE
Sbjct: 61  TLLELFEAKLEKHQGNLMRASVELAKDWRTDRMLRRLEAMLLCADKETTLVITGNGDVLE 120

Query: 121 PNDGIGAIGSGGSYAQSAAKALYENTELTPAEIVKKSLTIAGELCIYTNLNHIIETLD 178
           PNDGIGAIGSGGSYAQSAAKALYENTEL+PAEIVKKSLTIAGELCIYTNLNHIIETL+
Sbjct: 121 PNDGIGAIGSGGSYAQSAAKALYENTELSPAEIVKKSLTIAGELCIYTNLNHIIETLE 178


>ref|YP_004754690.1| ATP-dependent protease hslV [Collimonas fungivorans Ter331]
 gb|AEK63867.1| ATP-dependent protease hslV [Collimonas fungivorans Ter331]
          Length = 202

 Score =  310 bits (793), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 161/178 (90%), Positives = 171/178 (96%)

Query: 1   MEQFHGTTILSVRRGNQVALGGDGQVTLGNIVMKGSARKVRKLYHGKVLVGFAGGTADAF 60
           MEQFHGTTILSVRRGN VALGGDGQVTLGN+VMKG+ARKVRKLY GKVLVGFAGGTADAF
Sbjct: 25  MEQFHGTTILSVRRGNSVALGGDGQVTLGNVVMKGTARKVRKLYQGKVLVGFAGGTADAF 84

Query: 61  TLLDLFEAKLEKHQGNLMRASVELAKDWRTDRMLRRLEAMLLCADRDTTLVITGNGDVLE 120
           TLLDLFEAKLEKHQGNLMRASV+LAK+WRTDRMLRRLEAMLL ADR+TTLVITGNGDVLE
Sbjct: 85  TLLDLFEAKLEKHQGNLMRASVDLAKEWRTDRMLRRLEAMLLTADRETTLVITGNGDVLE 144

Query: 121 PNDGIGAIGSGGSYAQSAAKALYENTELTPAEIVKKSLTIAGELCIYTNLNHIIETLD 178
           P DGIGAIGSGG++AQSAAKAL ENTEL+PA+IVKKSL IAGELCIYTN +HIIETLD
Sbjct: 145 PTDGIGAIGSGGTFAQSAAKALQENTELSPADIVKKSLVIAGELCIYTNQSHIIETLD 202


>ref|YP_001354903.1| ATP-dependent protease peptidase subunit [Janthinobacterium sp.
           Marseille]
 sp|A6T306|HSLV_JANMA RecName: Full=ATP-dependent protease subunit HslV
 gb|ABR89719.1| ATP-dependent protease HslVU (ClpYQ), peptidase subunit
           [Janthinobacterium sp. Marseille]
          Length = 178

 Score =  305 bits (781), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 159/178 (89%), Positives = 173/178 (97%)

Query: 1   MEQFHGTTILSVRRGNQVALGGDGQVTLGNIVMKGSARKVRKLYHGKVLVGFAGGTADAF 60
           MEQFHGTTILSVRRGN VALGGDGQVTLGNIVMKG+ARKVRK+Y+GKVLVGFAGGTADAF
Sbjct: 1   MEQFHGTTILSVRRGNIVALGGDGQVTLGNIVMKGTARKVRKVYNGKVLVGFAGGTADAF 60

Query: 61  TLLDLFEAKLEKHQGNLMRASVELAKDWRTDRMLRRLEAMLLCADRDTTLVITGNGDVLE 120
           TLL+ FE+KLEKHQG+LMRASVELAKDWRTDRMLRRLEAMLL AD++TTL+ITGNGDVLE
Sbjct: 61  TLLERFESKLEKHQGHLMRASVELAKDWRTDRMLRRLEAMLLVADKETTLIITGNGDVLE 120

Query: 121 PNDGIGAIGSGGSYAQSAAKALYENTELTPAEIVKKSLTIAGELCIYTNLNHIIETLD 178
           PNDGIGAIGSGG+YAQSAAKAL ENT+L+P +IVKKSLTIAGELCIYTNL+HIIETLD
Sbjct: 121 PNDGIGAIGSGGTYAQSAAKALQENTDLSPEDIVKKSLTIAGELCIYTNLSHIIETLD 178


>ref|YP_001101197.1| ATP-dependent protease peptidase subunit [Herminiimonas
           arsenicoxydans]
 sp|A4G989|HSLV_HERAR RecName: Full=ATP-dependent protease subunit HslV
 emb|CAL63076.1| ATP-dependent protease HslV [Herminiimonas arsenicoxydans]
          Length = 178

 Score =  304 bits (778), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 161/178 (90%), Positives = 170/178 (95%)

Query: 1   MEQFHGTTILSVRRGNQVALGGDGQVTLGNIVMKGSARKVRKLYHGKVLVGFAGGTADAF 60
           MEQFHGTTILSVRRGN VALGGDGQVTLGNIVMKG+ARKVRK+Y GKVLVGFAGGTADAF
Sbjct: 1   MEQFHGTTILSVRRGNVVALGGDGQVTLGNIVMKGTARKVRKVYSGKVLVGFAGGTADAF 60

Query: 61  TLLDLFEAKLEKHQGNLMRASVELAKDWRTDRMLRRLEAMLLCADRDTTLVITGNGDVLE 120
           TLL+ FE+KLEKHQG+LMRASVELAKDWRTDRMLRRLEAMLL AD +TTLVITGNGDVLE
Sbjct: 61  TLLERFESKLEKHQGHLMRASVELAKDWRTDRMLRRLEAMLLVADHETTLVITGNGDVLE 120

Query: 121 PNDGIGAIGSGGSYAQSAAKALYENTELTPAEIVKKSLTIAGELCIYTNLNHIIETLD 178
           PNDGIGAIGSGG+YAQSAAKAL ENTEL+P EIVKKSLTIAGELCIYTNL+H IETLD
Sbjct: 121 PNDGIGAIGSGGTYAQSAAKALQENTELSPLEIVKKSLTIAGELCIYTNLSHTIETLD 178


>ref|ZP_04577782.1| ATP-dependent protease peptidase subunit [Oxalobacter formigenes
           HOxBLS]
 gb|EEO28744.1| ATP-dependent protease peptidase subunit [Oxalobacter formigenes
           HOxBLS]
          Length = 178

 Score =  287 bits (734), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 148/178 (83%), Positives = 166/178 (93%)

Query: 1   MEQFHGTTILSVRRGNQVALGGDGQVTLGNIVMKGSARKVRKLYHGKVLVGFAGGTADAF 60
           MEQFHGTTI+SVRRG++VALGGDGQVTLGNIV+KG+ARKVRKLY+G+VL GFAGGTADAF
Sbjct: 1   MEQFHGTTIVSVRRGDKVALGGDGQVTLGNIVIKGTARKVRKLYNGRVLAGFAGGTADAF 60

Query: 61  TLLDLFEAKLEKHQGNLMRASVELAKDWRTDRMLRRLEAMLLCADRDTTLVITGNGDVLE 120
           TL++ FEAKLEKHQGNL+R+SVELAKDWRTDR+LRRLEAMLL ADR++TLVITGNGDVLE
Sbjct: 61  TLIERFEAKLEKHQGNLLRSSVELAKDWRTDRILRRLEAMLLVADRESTLVITGNGDVLE 120

Query: 121 PNDGIGAIGSGGSYAQSAAKALYENTELTPAEIVKKSLTIAGELCIYTNLNHIIETLD 178
           P +G+GAIGSGG+YAQSAA AL  NTEL PAEIV KSL IAG+LCIYTN  HIIETLD
Sbjct: 121 PEEGVGAIGSGGAYAQSAALALQRNTELPPAEIVSKSLAIAGDLCIYTNQAHIIETLD 178