BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3566.p (463 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773617.1| ATP-dependent protease HslVU ATPase subunit ... 753 0.0 ref|YP_001354904.1| ATP-dependent protease ATP-binding subunit H... 707 0.0 ref|YP_001101198.1| ATP-dependent protease ATP-binding subunit H... 701 0.0 ref|YP_004754691.1| ATP-dependent hsl protease ATP-binding subun... 695 0.0 ref|ZP_08272628.1| ATP-dependent hsl protease ATP-binding subuni... 666 0.0 >ref|YP_003773617.1| ATP-dependent protease HslVU ATPase subunit [Herbaspirillum seropedicae SmR1] gb|ADJ61709.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit heat shock protein [Herbaspirillum seropedicae SmR1] Length = 448 Score = 753 bits (1945), Expect = 0.0, Method: Composition-based stats. Identities = 424/453 (93%), Positives = 441/453 (97%), Gaps = 5/453 (1%) Query: 11 MNMTPKEIVSELDKHVVGQARAKRAVAIALRNRWRRQQIEEPLRHEITPKNILMIGPTGV 70 MNMTPKEIVSELDKHVVGQARAKRAV+IALRNRWRRQQIEEPLRHEITPKNILMIGPTGV Sbjct: 1 MNMTPKEIVSELDKHVVGQARAKRAVSIALRNRWRRQQIEEPLRHEITPKNILMIGPTGV 60 Query: 71 GKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLVDIGIKQTRELETRKVRA 130 GKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLVDIGIKQTRELETRKVR Sbjct: 61 GKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLVDIGIKQTRELETRKVRT 120 Query: 131 RAEDAAEDRVLDILLPPARDFGFTPEGNKNAVASDDGVEEKGSTTRQTFRKRLREGALDD 190 RAEDAAEDR+LD+LLPPARDFGFTP+G+ N+ DD +TTRQTFRKRLREGALDD Sbjct: 121 RAEDAAEDRILDVLLPPARDFGFTPDGSNNSGEKDDK-----NTTRQTFRKRLREGALDD 175 Query: 191 REIEIELSESSPAMEIMAPPGMEEMTEQIKTMFSGLGNQRKKARKIKIKEAMKLLIEEEA 250 REIE+EL+E++P+MEIMAPPGMEEMTEQIK+MFSGLGNQRKKARKIKIKEAMKLLIEEEA Sbjct: 176 REIELELAEAAPSMEIMAPPGMEEMTEQIKSMFSGLGNQRKKARKIKIKEAMKLLIEEEA 235 Query: 251 AKLVNEEELKQKAIANVEQNGIVFLDEIDKIATRSQNGNADVSRAGVQRDLLPLVEGTTV 310 AKLVNEEELKQKAIANVEQNGIVFLDEIDKIATRSQNGNADVSRAGVQRDLLPLVEGTTV Sbjct: 236 AKLVNEEELKQKAIANVEQNGIVFLDEIDKIATRSQNGNADVSRAGVQRDLLPLVEGTTV 295 Query: 311 NTKYGMIKTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDSLSIADFERILTGTDAC 370 NTKYGMIKTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDSLSIADFERILTGTDAC Sbjct: 296 NTKYGMIKTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDSLSIADFERILTGTDAC 355 Query: 371 LTKQYEALLATEGVKIEFADSGIKRLAEISHTVNEKTENIGARRLYTVMEKLLEEISFTA 430 LTKQYEALLATEGVK+EFADSGIKRLAEISH+VNEKTENIGARRLYTVMEKLLEEISFTA Sbjct: 356 LTKQYEALLATEGVKLEFADSGIKRLAEISHSVNEKTENIGARRLYTVMEKLLEEISFTA 415 Query: 431 GEAGVDGLLIDAGYVNERLGELAVDEDMSRYVL 463 GEAGV+GLLIDA YVNERLGELAVDED+SRYVL Sbjct: 416 GEAGVEGLLIDADYVNERLGELAVDEDLSRYVL 448 >ref|YP_001354904.1| ATP-dependent protease ATP-binding subunit HslU [Janthinobacterium sp. Marseille] gb|ABR89732.1| ATP-dependent HslUV protease ATP-binding subunit HslU [Janthinobacterium sp. Marseille] Length = 449 Score = 707 bits (1824), Expect = 0.0, Method: Composition-based stats. Identities = 384/453 (84%), Positives = 414/453 (91%), Gaps = 4/453 (0%) Query: 11 MNMTPKEIVSELDKHVVGQARAKRAVAIALRNRWRRQQIEEPLRHEITPKNILMIGPTGV 70 MNMTPKEIVSELDKHVVGQ RAKRAVAIALRNRWRRQQ+ EPLRHEITPKNILMIGPTGV Sbjct: 1 MNMTPKEIVSELDKHVVGQGRAKRAVAIALRNRWRRQQVAEPLRHEITPKNILMIGPTGV 60 Query: 71 GKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLVDIGIKQTRELETRKVRA 130 GKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDL+DIGIKQTRELETRKVRA Sbjct: 61 GKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIGIKQTRELETRKVRA 120 Query: 131 RAEDAAEDRVLDILLPPARDFGFTPEGNKNAVASDDGVEEKGSTTRQTFRKRLREGALDD 190 RAEDAAEDR++DIL+PPARDFGF P + + D G+ TRQTFRKRLREG LDD Sbjct: 121 RAEDAAEDRIIDILVPPARDFGFHPSSSTGS----DTAPSTGNATRQTFRKRLREGTLDD 176 Query: 191 REIEIELSESSPAMEIMAPPGMEEMTEQIKTMFSGLGNQRKKARKIKIKEAMKLLIEEEA 250 EIEIEL+E+ P+MEIMAPPGMEEMTEQIK+MFSG+G RKK RK+KIKEAMKLLIEEEA Sbjct: 177 TEIEIELAEAGPSMEIMAPPGMEEMTEQIKSMFSGVGGTRKKTRKVKIKEAMKLLIEEEA 236 Query: 251 AKLVNEEELKQKAIANVEQNGIVFLDEIDKIATRSQNGNADVSRAGVQRDLLPLVEGTTV 310 KLVNE+ELKQKAI NVEQNGIVFLDEIDKIATRS+NG ADVSRAGVQRDLLPLVEGTTV Sbjct: 237 GKLVNEDELKQKAITNVEQNGIVFLDEIDKIATRSENGGADVSRAGVQRDLLPLVEGTTV 296 Query: 311 NTKYGMIKTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDSLSIADFERILTGTDAC 370 NTKYGMIKTDHILFIASGAFHL+KPSDLIPELQGRFPIRVEL+SLSIADFERILT TDAC Sbjct: 297 NTKYGMIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELESLSIADFERILTSTDAC 356 Query: 371 LTKQYEALLATEGVKIEFADSGIKRLAEISHTVNEKTENIGARRLYTVMEKLLEEISFTA 430 LT+QYEALL TEGVKIEFA GIKR+AEI+++VNEKTENIGARRLYTVMEKLLEEISF+A Sbjct: 357 LTRQYEALLGTEGVKIEFAPDGIKRMAEIAYSVNEKTENIGARRLYTVMEKLLEEISFSA 416 Query: 431 GEAGVDGLLIDAGYVNERLGELAVDEDMSRYVL 463 + L+ID YV+ERLG L+V+ED+SRYVL Sbjct: 417 TDDPDQTLVIDGVYVDERLGALSVNEDLSRYVL 449 >ref|YP_001101198.1| ATP-dependent protease ATP-binding subunit HslU [Herminiimonas arsenicoxydans] emb|CAL63077.1| ATP-dependent Hsl protease ATP-binding subunit HslU [Herminiimonas arsenicoxydans] Length = 445 Score = 701 bits (1808), Expect = 0.0, Method: Composition-based stats. Identities = 384/451 (85%), Positives = 409/451 (90%), Gaps = 6/451 (1%) Query: 13 MTPKEIVSELDKHVVGQARAKRAVAIALRNRWRRQQIEEPLRHEITPKNILMIGPTGVGK 72 MTP+EIVSELDKHVVGQ AKRAVAIALRNRWRRQQ+ EPLRHEITPKNILMIGPTGVGK Sbjct: 1 MTPQEIVSELDKHVVGQGNAKRAVAIALRNRWRRQQVAEPLRHEITPKNILMIGPTGVGK 60 Query: 73 TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLVDIGIKQTRELETRKVRARA 132 TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDL+DIGIKQTRE ETRKVRARA Sbjct: 61 TEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIGIKQTREAETRKVRARA 120 Query: 133 EDAAEDRVLDILLPPARDFGFTPEGNKNAVASDDGVEEKGSTTRQTFRKRLREGALDDRE 192 EDAAEDRV+DIL+PPARDFGF P + S+D + TRQTFRKRLREG LDD E Sbjct: 121 EDAAEDRVIDILVPPARDFGFHPSATSTSDHSND------NATRQTFRKRLREGLLDDNE 174 Query: 193 IEIELSESSPAMEIMAPPGMEEMTEQIKTMFSGLGNQRKKARKIKIKEAMKLLIEEEAAK 252 IEIEL+E+ P MEIMAPPGMEEMTEQIK+MFSG G RKKARKIKI+EAMKLLIEEEA K Sbjct: 175 IEIELAEAGPTMEIMAPPGMEEMTEQIKSMFSGAGGNRKKARKIKIREAMKLLIEEEAGK 234 Query: 253 LVNEEELKQKAIANVEQNGIVFLDEIDKIATRSQNGNADVSRAGVQRDLLPLVEGTTVNT 312 LVNE+ELKQKAI NVEQNGIVFLDEIDKIA RS+ G A+VSRAGVQRDLLPLVEGTTVNT Sbjct: 235 LVNEDELKQKAITNVEQNGIVFLDEIDKIANRSEQGGAEVSRAGVQRDLLPLVEGTTVNT 294 Query: 313 KYGMIKTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDSLSIADFERILTGTDACLT 372 KYGMIKTDHILFIASGAFHL+KPSDLIPELQGRFPIRVEL+SLSIADFERILTGTDACLT Sbjct: 295 KYGMIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELESLSIADFERILTGTDACLT 354 Query: 373 KQYEALLATEGVKIEFADSGIKRLAEISHTVNEKTENIGARRLYTVMEKLLEEISFTAGE 432 KQY+ALLATEGVKIEFA GIKR+AEI+++VNEKTENIGARRLYTVMEKLLEEISF+A E Sbjct: 355 KQYQALLATEGVKIEFAQDGIKRMAEIAYSVNEKTENIGARRLYTVMEKLLEEISFSASE 414 Query: 433 AGVDGLLIDAGYVNERLGELAVDEDMSRYVL 463 L IDA YVNERLG L+VDED+SRYVL Sbjct: 415 NPDQTLPIDAAYVNERLGALSVDEDLSRYVL 445 >ref|YP_004754691.1| ATP-dependent hsl protease ATP-binding subunit hslU [Collimonas fungivorans Ter331] gb|AEK63868.1| ATP-dependent hsl protease ATP-binding subunit hslU [Collimonas fungivorans Ter331] Length = 547 Score = 695 bits (1794), Expect = 0.0, Method: Composition-based stats. Identities = 386/455 (84%), Positives = 418/455 (91%), Gaps = 4/455 (0%) Query: 10 TMNMTPKEIVSELDKHVVGQARAKRAVAIALRNRWRRQQIEEPLRHEITPKNILMIGPTG 69 TMNMTP+EIVSELDKHVVGQ RAKRAVAIALRNRWRRQQI EPLRHEITPKNILMIGPTG Sbjct: 96 TMNMTPQEIVSELDKHVVGQDRAKRAVAIALRNRWRRQQIAEPLRHEITPKNILMIGPTG 155 Query: 70 VGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLVDIGIKQTRELETRKVR 129 VGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDL+DIGIKQTRE E RKVR Sbjct: 156 VGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIGIKQTREAEMRKVR 215 Query: 130 ARAEDAAEDRVLDILLPPARDFGFTPEGNKNAVASDDGVEEKGSTTRQTFRKRLREGALD 189 RAEDAAEDRV+DIL+PPARDFGF PE + + +KGS TRQTFRKRLREGALD Sbjct: 216 TRAEDAAEDRVIDILVPPARDFGFHPE---QSSGDGENAGDKGSNTRQTFRKRLREGALD 272 Query: 190 DREIEIELSESSPAMEIMAPPGMEEMTEQIKTMFSGLGNQRKKARKIKIKEAMKLLIEEE 249 D+EIEIELSE++ MEIMAPPGMEEMTEQIK+MFSG+G+ RKK RKIKIK+AMK+LIEEE Sbjct: 273 DKEIEIELSEAASQMEIMAPPGMEEMTEQIKSMFSGIGSNRKKNRKIKIKDAMKVLIEEE 332 Query: 250 AAKLVNEEELKQKAIANVEQNGIVFLDEIDKIATRSQN-GNADVSRAGVQRDLLPLVEGT 308 AAKLVNE+ELKQKAI+NVEQNGIVFLDEIDKIATRSQN G ADVSRAGVQRDLLPLVEGT Sbjct: 333 AAKLVNEDELKQKAISNVEQNGIVFLDEIDKIATRSQNSGGADVSRAGVQRDLLPLVEGT 392 Query: 309 TVNTKYGMIKTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDSLSIADFERILTGTD 368 TVNTKYGMIKTDHILFIASGAFHL+KPSDLIPELQGRFPIRVELDSLSI+DFERI+TGTD Sbjct: 393 TVNTKYGMIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFERIMTGTD 452 Query: 369 ACLTKQYEALLATEGVKIEFADSGIKRLAEISHTVNEKTENIGARRLYTVMEKLLEEISF 428 ACLTKQYEALLATEGV +EFA G++RLAEI+ +VNEKTENIGARRLYTVMEKLLEEISF Sbjct: 453 ACLTKQYEALLATEGVTLEFAKEGVQRLAEIAFSVNEKTENIGARRLYTVMEKLLEEISF 512 Query: 429 TAGEAGVDGLLIDAGYVNERLGELAVDEDMSRYVL 463 +A A ++IDA YV++RLG L V+ED+SRYVL Sbjct: 513 SATNASEKTMVIDAAYVDQRLGALVVNEDLSRYVL 547 >ref|ZP_08272628.1| ATP-dependent hsl protease ATP-binding subunit HslU [Oxalobacteraceae bacterium IMCC9480] gb|EGF33923.1| ATP-dependent hsl protease ATP-binding subunit HslU [Oxalobacteraceae bacterium IMCC9480] Length = 453 Score = 666 bits (1719), Expect = 0.0, Method: Composition-based stats. Identities = 364/455 (80%), Positives = 408/455 (89%), Gaps = 7/455 (1%) Query: 9 TTMNMTPKEIVSELDKHVVGQARAKRAVAIALRNRWRRQQIEEPLRHEITPKNILMIGPT 68 T MNMTP+EIV+ELDKHVVGQA AKRAVAIALRNRWRRQQ+ EPLRHEITPKNILMIGPT Sbjct: 6 TLMNMTPQEIVTELDKHVVGQANAKRAVAIALRNRWRRQQVAEPLRHEITPKNILMIGPT 65 Query: 69 GVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLVDIGIKQTRELETRKV 128 GVGKTEIARRLA+LADAPFIKIEATKFTEVGYVGRDVDTIIRDL+DIGIKQTRE E RKV Sbjct: 66 GVGKTEIARRLARLADAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIGIKQTRESEMRKV 125 Query: 129 RARAEDAAEDRVLDILLPPARDFGFTPEGNKNAVASDDGVEEKGSTTRQTFRKRLREGAL 188 R RA DAAEDR++DIL+PPARDFG P + DG GSTTRQTFRKRLREG+L Sbjct: 126 RDRAGDAAEDRIIDILVPPARDFGIQP-------VATDGTPAAGSTTRQTFRKRLREGSL 178 Query: 189 DDREIEIELSESSPAMEIMAPPGMEEMTEQIKTMFSGLGNQRKKARKIKIKEAMKLLIEE 248 DD +IEIE+++S P M+IMAPPGMEEMTEQIKTMFSG+ N RKK RK+K+KEA+KLL+EE Sbjct: 179 DDHQIEIEVNDSGPQMDIMAPPGMEEMTEQIKTMFSGVSNNRKKMRKVKVKEALKLLVEE 238 Query: 249 EAAKLVNEEELKQKAIANVEQNGIVFLDEIDKIATRSQNGNADVSRAGVQRDLLPLVEGT 308 EA KL+NE+ELKQKAI NVEQNGIVFLDEIDKIA+RS+ G A+VSRAGVQRDLLPLVEGT Sbjct: 239 EAGKLLNEDELKQKAITNVEQNGIVFLDEIDKIASRSETGGAEVSRAGVQRDLLPLVEGT 298 Query: 309 TVNTKYGMIKTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDSLSIADFERILTGTD 368 TVNTKYGMI+TDHILFIASGAFHL+KPSDLIPELQGRFPIRVEL+SLSIADFERILTGTD Sbjct: 299 TVNTKYGMIRTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELESLSIADFERILTGTD 358 Query: 369 ACLTKQYEALLATEGVKIEFADSGIKRLAEISHTVNEKTENIGARRLYTVMEKLLEEISF 428 ACLT+QY+ALL+TE + I F+D GI+RLAEI+++VNEKTENIGARRLYTVMEKLLE++SF Sbjct: 359 ACLTRQYQALLSTENMTITFSDDGIRRLAEIAYSVNEKTENIGARRLYTVMEKLLEDMSF 418 Query: 429 TAGEAGVDGLLIDAGYVNERLGELAVDEDMSRYVL 463 A E + + I A YV+ERLG LAV+ED+S YVL Sbjct: 419 NATERSGETVNITAPYVDERLGALAVNEDLSHYVL 453