BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3565.p (394 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773619.1| outer membrane protein (porin) signal peptid... 514 e-143 ref|YP_003777672.1| outer membrane porin [Herbaspirillum seroped... 426 e-117 ref|YP_004754681.1| outer membrane protein [Collimonas fungivora... 370 e-100 ref|YP_004754680.1| outer membrane protein [Collimonas fungivora... 267 3e-69 ref|YP_004751955.1| outer membrane protein [Collimonas fungivora... 264 2e-68 >ref|YP_003773619.1| outer membrane protein (porin) signal peptide protein [Herbaspirillum seropedicae SmR1] gb|ADJ61711.1| outer membrane protein (porin) signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 390 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 331/394 (84%), Positives = 358/394 (90%), Gaps = 4/394 (1%) Query: 1 MKKSLLALAVLGAFAGAANAQSSVTIYGIVDTGVVYQSKVATASGGTGTKFGLNSGIIQG 60 MKKSLLALAVLGAFAGAA AQSSVTIYGIVDTGVVYQSKVAT +GGTG+KF LNSG+IQG Sbjct: 1 MKKSLLALAVLGAFAGAAQAQSSVTIYGIVDTGVVYQSKVATPTGGTGSKFSLNSGVIQG 60 Query: 61 SRIGFKGVEDLGGGLSAVFQLETGFSNDTGGLQGSDATTGSNLFRRKSVVGLTGNFGSVL 120 SRIGFKG EDLGGGLSAVF LE GFSNDTG L D+ T + LFRRKSVVGL GNFGSVL Sbjct: 61 SRIGFKGTEDLGGGLSAVFNLEAGFSNDTGAL--DDSKTSNTLFRRKSVVGLAGNFGSVL 118 Query: 121 VGRQTDFADTISAYTAVQDFGGWVNNSGSGLDRLQGTRTNNSISYTTNSLNGFTGNLMYG 180 +GRQTDFADTIS+YT+VQDFGGW +G LDRL+GTRTNNSISYTT +LNGFTGNLMYG Sbjct: 119 LGRQTDFADTISSYTSVQDFGGWTGAAGHNLDRLEGTRTNNSISYTTANLNGFTGNLMYG 178 Query: 181 FGETAGQTSAGQSFGIGGKYDNGPLGLGINYYQSKAGSTPSDVSLIPSSSTTTNVNTLTA 240 FGETAGQTSAGQ+FG+GGKYDNGPLGLGINYYQSKAGSTP+D SL+ ++T TN T Sbjct: 179 FGETAGQTSAGQAFGVGGKYDNGPLGLGINYYQSKAGSTPADASLL--AATGTNQFTNGT 236 Query: 241 NSGSTAQKVLNVAASYQFGPARVYGNWSRVKQDLNTQANLTSVGVGSLTSLTNRTLARSN 300 N+GSTAQKVLNVAASYQFGPARVYGNWSRVKQDLNTQANLT+ GVGSL +++NRTLA SN Sbjct: 237 NNGSTAQKVLNVAASYQFGPARVYGNWSRVKQDLNTQANLTAAGVGSLATISNRTLAASN 296 Query: 301 KADIYEIGTAYSLSPSLKLLAAVDHTRANFDGVSNKTKLTQVSLGTDYWLSKRTDLYAFL 360 KADIYEIGTAYSLSPSLKLLAAVDHTRA FDGVS K KLTQVSLGTDYWLSKRTDLYAFL Sbjct: 297 KADIYEIGTAYSLSPSLKLLAAVDHTRAQFDGVSGKAKLTQVSLGTDYWLSKRTDLYAFL 356 Query: 361 AYTKASDMVNPGVSDSTGTDGNQGAVAVGIRHKF 394 AY+KA+D+ NPGV+DS+GTDGNQGAVAVGIRHKF Sbjct: 357 AYSKATDLNNPGVADSSGTDGNQGAVAVGIRHKF 390 >ref|YP_003777672.1| outer membrane porin [Herbaspirillum seropedicae SmR1] emb|CAP19662.1| porin [Herbaspirillum seropedicae] gb|ADJ65764.1| outer membrane (porin) protein [Herbaspirillum seropedicae SmR1] Length = 387 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 288/399 (72%), Positives = 328/399 (82%), Gaps = 17/399 (4%) Query: 1 MKKSLLALAVLGAFAGAANAQSSVTIYGIVDTGVVYQSKV----ATASGGTGTKFGLNSG 56 MKKSLLALAVLGAFAGAA AQSSVTIYGIVDTG+ Y SKV A + TG+KFG+NSG Sbjct: 1 MKKSLLALAVLGAFAGAAQAQSSVTIYGIVDTGIAYSSKVGYTDANGNAATGSKFGINSG 60 Query: 57 IIQGSRIGFKGVEDLGGGLSAVFQLETGFSNDTGGLQGSDATTGSNLFRRKSVVGLTGNF 116 +IQGSRIGFKGVEDLGGGLSAVF LETGF++D GGLQGSDA T SNLFRRKSVVGL+G F Sbjct: 61 VIQGSRIGFKGVEDLGGGLSAVFNLETGFTSDDGGLQGSDAVTSSNLFRRKSVVGLSGGF 120 Query: 117 GSVLVGRQTDFADTISAYTAVQDFGGWVNNSGSGLDRLQGTRTNNSISYTTNSLNGFTGN 176 G+VL+GRQTDFADTISAYTAV DFGG V NSGS L+RLQGTRTNNS+SYTT +L+GFTGN Sbjct: 121 GTVLLGRQTDFADTISAYTAVADFGGVVANSGSSLNRLQGTRTNNSVSYTTANLSGFTGN 180 Query: 177 LMYGFGETAGQTSAGQSFGIGGKYDNGPLGLGINYYQSKAGSTPSDVSLIPSSSTTTNVN 236 L+YGFGE AG+TSAGQ++GIGGKYDNGPLGLGINYYQSKAGSTPSD SLIP++ T Sbjct: 181 LIYGFGEQAGKTSAGQAYGIGGKYDNGPLGLGINYYQSKAGSTPSDTSLIPAAGATNANT 240 Query: 237 TLTANSGSTAQKVLNVAASYQFGPARVYGNWSRVKQDLNTQANLTSVGVGSLTSLTNRTL 296 L +G+TA K LNV ASYQFGPARVY N+SRVKQDL + + TL Sbjct: 241 ALGV-AGNTALKSLNVVASYQFGPARVYANYSRVKQDLKGTPTVATA-----------TL 288 Query: 297 ARSNKADIYEIGTAYSLSPSLKLLAAVDHTRANFDGVSNKTKLTQVSLGTDYWLSKRTDL 356 A + KAD YEIGTAYSLSPSLKLLAAVDH+RA F+GV+ K KLTQ+SLG DY+LSKRTDL Sbjct: 289 ANAQKADTYEIGTAYSLSPSLKLLAAVDHSRATFNGVNTKGKLTQISLGADYFLSKRTDL 348 Query: 357 YAFLAYTKASDMVNPGVS-DSTGTDGNQGAVAVGIRHKF 394 YAF++ +ASD+ NPGV+ +TG+D +Q A+ GIRHKF Sbjct: 349 YAFVSNMRASDIQNPGVTGGATGSDASQTAIITGIRHKF 387 >ref|YP_004754681.1| outer membrane protein [Collimonas fungivorans Ter331] gb|AAT42406.1| outer membrane protein [Collimonas fungivorans Ter331] gb|AEK63858.1| Outer membrane protein [Collimonas fungivorans Ter331] Length = 390 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 254/397 (63%), Positives = 298/397 (75%), Gaps = 10/397 (2%) Query: 1 MKKSLLALAVLGAFAGAANAQSSVTIYGIVDTGVVYQSKVATASGGTGTKFGLNSGIIQG 60 MKKSL+ALAVLGA AGAA AQSSVTIYGIVDTG+VY SK T++GGTG+KF +NSGIIQG Sbjct: 1 MKKSLIALAVLGAIAGAAQAQSSVTIYGIVDTGIVYTSKALTSTGGTGSKFSINSGIIQG 60 Query: 61 SRIGFKGVEDLGGGLSAVFQLETGFSNDTGGLQGSDATTGSNLFRRKSVVGLTGNFGSVL 120 SR+GFKGVEDLGGGL A+FQLE GF+NDTGGLQG TT LFRRKSVVGL GNFGSVL Sbjct: 61 SRLGFKGVEDLGGGLKALFQLEAGFNNDTGGLQGDKGTT--TLFRRKSVVGLGGNFGSVL 118 Query: 121 VGRQTDFADTISAYTAVQDFGGWVNNSGSGLDRLQGTRTNNSISYTTNSLNGFTGNLMYG 180 +GRQTD D +S +T+VQDFGG + G LDRL+GTRTNNSI Y T ++GFTG+L+YG Sbjct: 119 LGRQTDILDDVSQWTSVQDFGGVTGSVGHNLDRLEGTRTNNSIRYNTPDVSGFTGSLIYG 178 Query: 181 FGETAGQTSAGQSFGIGGKYDNGPLGLGINYYQSKAGS-TPSDVSLIPSSSTTTNVNTLT 239 FGETAGQTSAGQSFG G +Y NGPLGL YYQSK GS T SD SLI S V + Sbjct: 179 FGETAGQTSAGQSFGAGAQYANGPLGLFAAYYQSKLGSPTASDTSLINGS----QVANFS 234 Query: 240 ANSGSTAQKVLNVAASYQFGPARVYGNWSRVKQDLNTQANLTSVGVGSLTSLTNRTLARS 299 SG TA K ++ ASYQ GPAR+YGNWSR KQ L T +N + G+ S T + + Sbjct: 235 GKSGDTALKTFSIGASYQAGPARLYGNWSRTKQPLATSSNSATTGILQPGSFTVGSF-NN 293 Query: 300 NKADIYEIGTAYSLSPSLKLLAAVDHTRANF-DGVSNKTKLTQVSLGTDYWLSKRTDLYA 358 KADI+E+G Y+++ L LLA+V + + F D ++K KLTQ +LGTDY+LSKRTDLYA Sbjct: 294 TKADIFELGVNYAVTAPLHLLASVQYNKLTFADAGADKGKLTQFNLGTDYFLSKRTDLYA 353 Query: 359 FLAYTKASDMVNPGV-SDSTGTDGNQGAVAVGIRHKF 394 F++ +A D VNPGV DS G GNQ AVAVGIRHKF Sbjct: 354 FVSNLRAKDAVNPGVYGDSLGDTGNQTAVAVGIRHKF 390 >ref|YP_004754680.1| outer membrane protein [Collimonas fungivorans Ter331] gb|AAT42405.1| outer membrane protein [Collimonas fungivorans Ter331] gb|AEK63857.1| Outer membrane protein [Collimonas fungivorans Ter331] Length = 371 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 200/410 (48%), Positives = 248/410 (60%), Gaps = 55/410 (13%) Query: 1 MKKSLLALAVLGAFAGAANAQSSVTIYGIVDTGVVYQSKVATASGGT-----GTKFGLNS 55 MKKSL+AL VLGA AGAA AQSSVTIYG VD GV Y + A+ G+KFG+ S Sbjct: 1 MKKSLIALTVLGAIAGAAQAQSSVTIYGTVDAGVTYSNNNVPANNANDGRLGGSKFGVGS 60 Query: 56 GIIQGSRIGFKGVEDLGGGLSAVFQLETGFSNDTGGLQGSDATTGSNLFRRKSVVGLTGN 115 G I SRIGFKGVEDLGGGL A+FQLE GF+ DTGG + + LF RKSVVGL GN Sbjct: 61 GNIDTSRIGFKGVEDLGGGLKALFQLEAGFNTDTGGFEQDKS-----LFNRKSVVGLGGN 115 Query: 116 FGSVLVGRQTDFADTIS-AYTAVQDFGGWVNNSGSGLDRLQGTRTNNSISYTTNSLNGFT 174 FGSVL+GRQ+D D YT+V+DFG +V + G DRL+G+RT NSI Y + S +G T Sbjct: 116 FGSVLLGRQSDVLDDYGHQYTSVKDFGNFVGSPHVG-DRLEGSRTQNSIRYNSPSFSGVT 174 Query: 175 GNLMYGFGETAGQTSAGQSFGIGGKYDNGPLGLGINYYQSKAGSTPSDVSLIPSSSTTTN 234 + +YGFGE AG S GQ+FG G YDNGPLG + YYQSKAG +D + + + Sbjct: 175 ASAIYGFGEEAGANSNGQAFGGGVAYDNGPLGAYLGYYQSKAGKNSADTAPLFQLNPVA- 233 Query: 235 VNTLTANSGSTAQKVLNVAASYQFGPARVYGNWSRVKQDLNTQANLTSVGVGSLTSLTNR 294 G T K ++ ASYQ GPAR+YGNWSR+ Sbjct: 234 -------EGDTMNKTFSLGASYQAGPARLYGNWSRI------------------------ 262 Query: 295 TLARSNKADIYEIGTAYSLSPSLKLLAAVDHTR----ANFDGVSNKTKLTQVSLGTDYWL 350 + K +I+E+GT Y+L+ L LLA+V HT+ N +G S+K ++TQV+LG DY+L Sbjct: 263 NVPEQYKQNIFELGTDYALTAPLHLLASVQHTQYSLDGNTEGNSSKPQVTQVNLGVDYYL 322 Query: 351 SKRTDLYAFLAYTKAS------DMVNPGVSDSTGTDGNQGAVAVGIRHKF 394 SKRTDLY +Y K D P V + G NQ AVA+GIRHKF Sbjct: 323 SKRTDLYTLASYAKGKNGAPVGDYSAPAVQNDAGKS-NQAAVAIGIRHKF 371 >ref|YP_004751955.1| outer membrane protein [Collimonas fungivorans Ter331] gb|AEK61132.1| Outer membrane protein [Collimonas fungivorans Ter331] Length = 370 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 188/405 (46%), Positives = 252/405 (62%), Gaps = 46/405 (11%) Query: 1 MKKSLLALAVLGAFAGAANAQSSVTIYGIVDTGVVYQSKVATASGGTGTKFGLNSGIIQG 60 MKK++ ALA LG A AQ++VTIYG++D G+ Y SKV + ++ L+SG + Sbjct: 1 MKKTVFALAALGLIGANAQAQTNVTIYGVIDAGLTYTSKVGPKND---SRISLDSGDMAT 57 Query: 61 SRIGFKGVEDLGGGLSAVFQLETGFSNDTGGLQGSDATTGSNLFRRKSVVGLTGNFGSVL 120 SRIGF+G EDLGGGL A+FQLE GF+ D G L T S LF RK+VVGL+G+FG+V Sbjct: 58 SRIGFRGTEDLGGGLKAIFQLENGFNADDGSL-----ATASTLFDRKAVVGLSGSFGTVT 112 Query: 121 VGRQTDFADTI-SAYTAVQDFGGWVNNSG--SGLDRLQGTRTNNSISYTTNSLNGFTGNL 177 +GRQTD+ D I S YT+VQ FG +G + LDR+ G R NNSI Y + +L+GFTG+L Sbjct: 113 LGRQTDYLDDIGSKYTSVQTFGSNGIKAGHFNNLDRVGGVRANNSIRYDSANLSGFTGSL 172 Query: 178 MYGFGETAGQTSAGQSFGIGGKYDNGPLGLGINYYQSKAGSTPSDVSLIPSSSTTTNVNT 237 YGFGE AGQTSAGQSFG+ G Y NGP G+G+ Y+Q+K + + Sbjct: 173 FYGFGEVAGQTSAGQSFGLAGNYANGPFGIGLGYFQTKLAA-----------------DA 215 Query: 238 LTANSGSTAQKVLNVAASYQFGPARVYGNWSRVKQDLNTQANLTSVGVGSLTSLTNRTLA 297 L + +G T K + ASYQ GPA++YG WS+ K+ L T G+ ++T+ T Sbjct: 216 LPSKAGDTDLKTFTLGASYQAGPAKIYGAWSQTKRPLAAALAAT--GLVNITTAT----- 268 Query: 298 RSNKADIYEIGTAYSLSPSLKLLAAVDHTRANFD---GVSNKTKLTQVSLGTDYWLSKRT 354 KA+I+++G YSLS +L LLA+V + RA+ S K K TQ++LG DY+LSKRT Sbjct: 269 ---KANIFDLGVDYSLSGNLHLLASVIYDRADLSRKTAGSTKGKTTQLNLGVDYYLSKRT 325 Query: 355 DLYAFLAYTKASDMVNPGV-----SDSTGTDGNQGAVAVGIRHKF 394 DLYA +A+D+ NPGV S + D +Q VG+RHKF Sbjct: 326 DLYALYTNQRANDVNNPGVINAAYSSAPADDTSQNVFRVGLRHKF 370