BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3560.p (430 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773625.1| diaminopimelate decarboxylase [Herbaspirillu... 806 0.0 ref|YP_004751104.1| diaminopimelate decarboxylase [Collimonas fu... 695 0.0 ref|YP_001101359.1| diaminopimelate decarboxylase [Herminiimonas... 683 0.0 ref|YP_001355061.1| diaminopimelate decarboxylase [Janthinobacte... 681 0.0 ref|ZP_04580025.1| diaminopimelate decarboxylase [Oxalobacter fo... 585 e-165 >ref|YP_003773625.1| diaminopimelate decarboxylase [Herbaspirillum seropedicae SmR1] gb|ADJ61717.1| diaminopimelate decarboxylase protein [Herbaspirillum seropedicae SmR1] Length = 430 Score = 806 bits (2082), Expect = 0.0, Method: Composition-based stats. Identities = 404/429 (94%), Positives = 416/429 (96%) Query: 1 MSHFSYRNGALHAEDVSLQALADQFGTPLYVYSKSALVQNFSAYADACRTAGRAEGAKGG 60 MSHFSYRNG LHAE VSL LA+QFGTPLYVYSK+ALV+NFSAYA+AC+ AGRA+G KGG Sbjct: 1 MSHFSYRNGVLHAEQVSLATLAEQFGTPLYVYSKAALVENFSAYANACQQAGRADGGKGG 60 Query: 61 ALVCYSVKSNSNLAVLNLLGKLGSGFDIVSGGELLRVVAAGGDARKVIFSGVGKGRDEMK 120 ALVCYSVKSNSNLAVLNLLG+LGSGFDIVSGGELLRVVAAGGDARKVIFSGVGKGRDEMK Sbjct: 61 ALVCYSVKSNSNLAVLNLLGRLGSGFDIVSGGELLRVVAAGGDARKVIFSGVGKGRDEMK 120 Query: 121 LALEHDIFCFNVESIPEVARLNEVAGALGKRARISLRVNPNVDAKTHPYISTGLKENKFG 180 LALEHDI CFNVESIPEVARLNEVAGALGKRARISLRVNPNVDAKTHPYISTGLKENKFG Sbjct: 121 LALEHDILCFNVESIPEVARLNEVAGALGKRARISLRVNPNVDAKTHPYISTGLKENKFG 180 Query: 181 VAYEDALNCYRAAAALPNIDVVGIDCHIGSQLLDDSPLLEALDKIIDMVDALEAEGIPIH 240 VAYEDALNCYRAAAALP+I+VVGIDCHIGSQLLDDSPLLEALDKIIDMVDALEAEGIPIH Sbjct: 181 VAYEDALNCYRAAAALPHIEVVGIDCHIGSQLLDDSPLLEALDKIIDMVDALEAEGIPIH 240 Query: 241 HLDIGGGIGIRYDDEQPVAIGDYLARVFARVDAWRAKKYDGRPIQVMFEPGRSVVGNAGL 300 HLDIGGGIGIRYDDEQPVAIGDYLARVFARVDAWRA KY GRPIQVMFEPGRSVVGNAGL Sbjct: 241 HLDIGGGIGIRYDDEQPVAIGDYLARVFARVDAWRASKYQGRPIQVMFEPGRSVVGNAGL 300 Query: 301 LLTEVQYLKHGEEKNFAVVDAAMNDLMRPAMYEAWHGVQTVKENAGQPRIYDVVGPVCES 360 LLTEVQYLKHGE KNFAVVDAAMNDLMRPAMYEAWHGV+TVKENAGQPRIYDVVGPVCES Sbjct: 301 LLTEVQYLKHGEGKNFAVVDAAMNDLMRPAMYEAWHGVKTVKENAGQPRIYDVVGPVCES 360 Query: 361 GDWLARSRELAIHEGDLLALMSAGAYGMTMASNYNTRGRAAEVLVDGSQVHLVRARENPA 420 GDWLARSRELAI EGDLLALMSAGAYGMTMASNYNTRGRAAEVLVDG + HL+RARENPA Sbjct: 361 GDWLARSRELAIGEGDLLALMSAGAYGMTMASNYNTRGRAAEVLVDGERAHLIRARENPA 420 Query: 421 DLFALEKIV 429 DLFALEKIV Sbjct: 421 DLFALEKIV 429 >ref|YP_004751104.1| diaminopimelate decarboxylase [Collimonas fungivorans Ter331] gb|AEK60281.1| Diaminopimelate decarboxylase [Collimonas fungivorans Ter331] Length = 428 Score = 695 bits (1793), Expect = 0.0, Method: Composition-based stats. Identities = 332/429 (77%), Positives = 379/429 (88%), Gaps = 3/429 (0%) Query: 1 MSHFSYRNGALHAEDVSLQALADQFGTPLYVYSKSALVQNFSAYADACRTAGRAEGAKGG 60 MS+FSY+NG LHAE+V+L A++ QFG+P YVYSK+AL NF AYA+AC+ R G Sbjct: 1 MSYFSYKNGVLHAENVALTAISQQFGSPTYVYSKAALTANFLAYANACKQHSRQ---ADG 57 Query: 61 ALVCYSVKSNSNLAVLNLLGKLGSGFDIVSGGELLRVVAAGGDARKVIFSGVGKGRDEMK 120 AL+CYSVKSNSNLAVL LL +LGSGFDIVSGGELLRV+AAGGD KVIFSGVGK R+EM+ Sbjct: 58 ALICYSVKSNSNLAVLQLLNQLGSGFDIVSGGELLRVIAAGGDPSKVIFSGVGKSREEMR 117 Query: 121 LALEHDIFCFNVESIPEVARLNEVAGALGKRARISLRVNPNVDAKTHPYISTGLKENKFG 180 LAL HDI CFNVES+PE+ RLNEVAGA+GKRA ISLRVNP+VDAKTHPYISTGLKENKFG Sbjct: 118 LALSHDILCFNVESVPELHRLNEVAGAMGKRAAISLRVNPDVDAKTHPYISTGLKENKFG 177 Query: 181 VAYEDALNCYRAAAALPNIDVVGIDCHIGSQLLDDSPLLEALDKIIDMVDALEAEGIPIH 240 VAY++AL+CYR AAALP IDV GIDCHIGSQLLDD+P+LEALDK+I++VD L +EGI +H Sbjct: 178 VAYDEALSCYRTAAALPYIDVAGIDCHIGSQLLDDAPMLEALDKLIELVDQLASEGIHLH 237 Query: 241 HLDIGGGIGIRYDDEQPVAIGDYLARVFARVDAWRAKKYDGRPIQVMFEPGRSVVGNAGL 300 HLDIGGGIGI YDDEQPV IGDYL R+FAR++AWR +KY G PI+VMFEPGRS+VGNAG+ Sbjct: 238 HLDIGGGIGITYDDEQPVVIGDYLGRLFARINAWREEKYQGAPIKVMFEPGRSIVGNAGI 297 Query: 301 LLTEVQYLKHGEEKNFAVVDAAMNDLMRPAMYEAWHGVQTVKENAGQPRIYDVVGPVCES 360 LLTEVQYLKH E KNFAVVDAAMNDLMRPA+YEAWHGVQTV + + P++YDVVGPVCES Sbjct: 298 LLTEVQYLKHSEAKNFAVVDAAMNDLMRPALYEAWHGVQTVSQRSTAPQVYDVVGPVCES 357 Query: 361 GDWLARSRELAIHEGDLLALMSAGAYGMTMASNYNTRGRAAEVLVDGSQVHLVRARENPA 420 GDWLAR R LAI GDLLALMSAGAYGMTM+SNYNTRGRAAEV+VDG+QVHL+R RENPA Sbjct: 358 GDWLARCRSLAIEAGDLLALMSAGAYGMTMSSNYNTRGRAAEVMVDGTQVHLIRQRENPA 417 Query: 421 DLFALEKIV 429 DLF LE ++ Sbjct: 418 DLFTLESLI 426 >ref|YP_001101359.1| diaminopimelate decarboxylase [Herminiimonas arsenicoxydans] emb|CAL63238.1| Diaminopimelate decarboxylase (DAP decarboxylase) [Herminiimonas arsenicoxydans] Length = 427 Score = 683 bits (1762), Expect = 0.0, Method: Composition-based stats. Identities = 332/429 (77%), Positives = 378/429 (88%), Gaps = 3/429 (0%) Query: 1 MSHFSYRNGALHAEDVSLQALADQFGTPLYVYSKSALVQNFSAYADACRTAGRAEGAKGG 60 MSHFSY++G L AE L +A QFG+P Y+YSK+ALV+NFS+YADAC+ GR + Sbjct: 1 MSHFSYQDGVLCAEHTPLTQIARQFGSPTYIYSKAALVENFSSYADACKKHGRTDDT--- 57 Query: 61 ALVCYSVKSNSNLAVLNLLGKLGSGFDIVSGGELLRVVAAGGDARKVIFSGVGKGRDEMK 120 ALVCYSVKSNSNLAVL LLGKLGSGFDIVSGGELLRV+AAGG RKVIFSGVGK R+EM+ Sbjct: 58 ALVCYSVKSNSNLAVLQLLGKLGSGFDIVSGGELLRVLAAGGSPRKVIFSGVGKSREEMQ 117 Query: 121 LALEHDIFCFNVESIPEVARLNEVAGALGKRARISLRVNPNVDAKTHPYISTGLKENKFG 180 LAL HDI CFNVESIPE+ RLNEVAG +GKRA +SLRVNPNVDAKTHPYISTGLK+NKFG Sbjct: 118 LALSHDILCFNVESIPELHRLNEVAGEMGKRASVSLRVNPNVDAKTHPYISTGLKDNKFG 177 Query: 181 VAYEDALNCYRAAAALPNIDVVGIDCHIGSQLLDDSPLLEALDKIIDMVDALEAEGIPIH 240 VAYEDAL YR A+ALPNI VVGIDCHIGSQLLDD+PLLEA+DK+I+++DAL AEGI IH Sbjct: 178 VAYEDALTTYRVASALPNISVVGIDCHIGSQLLDDAPLLEAVDKLIELIDALAAEGIVIH 237 Query: 241 HLDIGGGIGIRYDDEQPVAIGDYLARVFARVDAWRAKKYDGRPIQVMFEPGRSVVGNAGL 300 HLDIGGGIGI YD+++PVA+GDYLARVFA+VDAWRAK + G PI+V+FEPGRS+VGNAG+ Sbjct: 238 HLDIGGGIGINYDNDKPVAVGDYLARVFAKVDAWRAKNHAGAPIKVLFEPGRSIVGNAGI 297 Query: 301 LLTEVQYLKHGEEKNFAVVDAAMNDLMRPAMYEAWHGVQTVKENAGQPRIYDVVGPVCES 360 LLTEVQY+KHGE KNFA+VDAAMNDLMRPAMYEAWHGVQ V + + YDVVGPVCES Sbjct: 298 LLTEVQYIKHGETKNFAIVDAAMNDLMRPAMYEAWHGVQPVLQRHVAAQTYDVVGPVCES 357 Query: 361 GDWLARSRELAIHEGDLLALMSAGAYGMTMASNYNTRGRAAEVLVDGSQVHLVRARENPA 420 GDWLARSRELAI EGDLLA+MSAGAYGMTM+SNYNTRGRAAEV+VDG+ VHL+R RE + Sbjct: 358 GDWLARSRELAIQEGDLLAIMSAGAYGMTMSSNYNTRGRAAEVMVDGATVHLIRKRELAS 417 Query: 421 DLFALEKIV 429 DLFALE ++ Sbjct: 418 DLFALETLL 426 >ref|YP_001355061.1| diaminopimelate decarboxylase [Janthinobacterium sp. Marseille] gb|ABR88379.1| diaminopimelate decarboxylase [Janthinobacterium sp. Marseille] Length = 427 Score = 681 bits (1758), Expect = 0.0, Method: Composition-based stats. Identities = 327/429 (76%), Positives = 378/429 (88%), Gaps = 3/429 (0%) Query: 1 MSHFSYRNGALHAEDVSLQALADQFGTPLYVYSKSALVQNFSAYADACRTAGRAEGAKGG 60 MSHFSY++G L AE+ L +A QFG+P Y+YSK+ALV+NFSAYADAC+ GR + Sbjct: 1 MSHFSYQDGVLCAENTPLTQIARQFGSPTYIYSKAALVENFSAYADACKQHGRNDET--- 57 Query: 61 ALVCYSVKSNSNLAVLNLLGKLGSGFDIVSGGELLRVVAAGGDARKVIFSGVGKGRDEMK 120 ALVCYSVKSNSNLAVLNLLGKLGSGFDIVSGGELLRV+AAGG RKVIFSGVGK R+EM+ Sbjct: 58 ALVCYSVKSNSNLAVLNLLGKLGSGFDIVSGGELLRVLAAGGSPRKVIFSGVGKSREEMQ 117 Query: 121 LALEHDIFCFNVESIPEVARLNEVAGALGKRARISLRVNPNVDAKTHPYISTGLKENKFG 180 LAL HDI CFNVESIPE+ RLN VA +GK+A +SLRVNPNVDAKTHPYISTGLK+NKFG Sbjct: 118 LALSHDILCFNVESIPELHRLNAVAAEMGKKASVSLRVNPNVDAKTHPYISTGLKDNKFG 177 Query: 181 VAYEDALNCYRAAAALPNIDVVGIDCHIGSQLLDDSPLLEALDKIIDMVDALEAEGIPIH 240 +AYED L YR AAALPNIDVVGIDCHIGSQLLDD+PLLEA+DK+I+++D L+AEGI +H Sbjct: 178 IAYEDTLTTYRVAAALPNIDVVGIDCHIGSQLLDDAPLLEAVDKLIELIDTLDAEGIHLH 237 Query: 241 HLDIGGGIGIRYDDEQPVAIGDYLARVFARVDAWRAKKYDGRPIQVMFEPGRSVVGNAGL 300 HLDIGGGIGI YD++QPVA+GDYLAR+FA++DAWR +K+ G PI+V+FEPGRS+VGNAG+ Sbjct: 238 HLDIGGGIGINYDNDQPVAVGDYLARLFAKIDAWRKQKHGGAPIKVLFEPGRSIVGNAGI 297 Query: 301 LLTEVQYLKHGEEKNFAVVDAAMNDLMRPAMYEAWHGVQTVKENAGQPRIYDVVGPVCES 360 LLTEVQY+KHGE KNFA+VDAAMNDLMRPAMYEAWHGV VK++ YDVVGPVCES Sbjct: 298 LLTEVQYIKHGETKNFAIVDAAMNDLMRPAMYEAWHGVLPVKQSTAAAATYDVVGPVCES 357 Query: 361 GDWLARSRELAIHEGDLLALMSAGAYGMTMASNYNTRGRAAEVLVDGSQVHLVRARENPA 420 GDWLARSRELAI EGDLLA+MSAGAYGMTM+SNYNTRGRAAEV+VDG +VHL+R RE + Sbjct: 358 GDWLARSRELAIEEGDLLAIMSAGAYGMTMSSNYNTRGRAAEVMVDGDKVHLIRKREAAS 417 Query: 421 DLFALEKIV 429 DLFALE ++ Sbjct: 418 DLFALESLL 426 >ref|ZP_04580025.1| diaminopimelate decarboxylase [Oxalobacter formigenes OXCC13] gb|EEO30998.1| diaminopimelate decarboxylase [Oxalobacter formigenes OXCC13] Length = 428 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 286/427 (66%), Positives = 346/427 (81%), Gaps = 3/427 (0%) Query: 3 HFSYRNGALHAEDVSLQALADQFGTPLYVYSKSALVQNFSAYADACRTAGRAEGAKGGAL 62 HFSY++ L+ + +SL+ LA ++GTPLYVYSK ALV+NF YAD C+ R E K +L Sbjct: 4 HFSYQDDTLNIDGISLKELAIEYGTPLYVYSKKALVENFRQYADTCK---RFESDKIHSL 60 Query: 63 VCYSVKSNSNLAVLNLLGKLGSGFDIVSGGELLRVVAAGGDARKVIFSGVGKGRDEMKLA 122 VCYSVKSNSNLA+LN+LG+ G+GFDIVSGGEL RV+AAG D RKVIFSGVGK +E+ LA Sbjct: 61 VCYSVKSNSNLAILNILGQEGAGFDIVSGGELQRVIAAGCDPRKVIFSGVGKTANEIGLA 120 Query: 123 LEHDIFCFNVESIPEVARLNEVAGALGKRARISLRVNPNVDAKTHPYISTGLKENKFGVA 182 L+HDI CFN+ES E+ R+N+VA +GK+AR+S RVNPNVD KTHPYISTGLKENKFG+ Sbjct: 121 LKHDIHCFNIESFAELHRINQVAQEMGKQARVSFRVNPNVDPKTHPYISTGLKENKFGIP 180 Query: 183 YEDALNCYRAAAALPNIDVVGIDCHIGSQLLDDSPLLEALDKIIDMVDALEAEGIPIHHL 242 YE+AL CY+AAA++ NIDV GIDCHIGSQLLDD+PLLEALDK++ +VD L EGI + H+ Sbjct: 181 YEEALACYKAAASMTNIDVTGIDCHIGSQLLDDAPLLEALDKLLHLVDQLSEEGITLKHI 240 Query: 243 DIGGGIGIRYDDEQPVAIGDYLARVFARVDAWRAKKYDGRPIQVMFEPGRSVVGNAGLLL 302 DIGGGIGI YDDE+PVAI DYL R+F RV+ WR +K+ + I +MFEPGRS+ GNAGLLL Sbjct: 241 DIGGGIGITYDDEKPVAISDYLTRLFTRVENWRKQKHPDQSIGLMFEPGRSISGNAGLLL 300 Query: 303 TEVQYLKHGEEKNFAVVDAAMNDLMRPAMYEAWHGVQTVKENAGQPRIYDVVGPVCESGD 362 T+VQYLK +KNFA+VDAAMNDLMRP++YEAWH V V G+ YD+VGPVCESGD Sbjct: 301 TQVQYLKTNSDKNFAIVDAAMNDLMRPSLYEAWHKVLPVSNRKGEATSYDIVGPVCESGD 360 Query: 363 WLARSRELAIHEGDLLALMSAGAYGMTMASNYNTRGRAAEVLVDGSQVHLVRARENPADL 422 WLA+ REL I D+LA+MSAGAYGM MASNYNTRGRAAEVLVD +L+R RE P +L Sbjct: 361 WLAKQRELVIQADDILAIMSAGAYGMAMASNYNTRGRAAEVLVDNGNAYLIRRRETPEEL 420 Query: 423 FALEKIV 429 FALE ++ Sbjct: 421 FALESVL 427