BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3551.p (433 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773667.1| proline/betaine transporter protein [Herbasp... 704 0.0 ref|YP_295112.1| major facilitator transporter [Ralstonia eutrop... 651 0.0 ref|YP_841023.1| major facilitator superfamily transporter MHS f... 640 0.0 ref|YP_004681701.1| citrate-proton symporter CitA [Cupriavidus n... 634 e-180 ref|ZP_04942237.1| General substrate transporter:Major facilitat... 609 e-172 >ref|YP_003773667.1| proline/betaine transporter protein [Herbaspirillum seropedicae SmR1] gb|ADJ61759.1| proline/betaine transporter protein [Herbaspirillum seropedicae SmR1] Length = 433 Score = 704 bits (1817), Expect = 0.0, Method: Composition-based stats. Identities = 403/433 (93%), Positives = 415/433 (95%) Query: 1 MQATTLPAGGIPVVTNHQRRRAIIATVIGNGLEWFDFTVYSFFAVIIAKLFFPTGNDLTS 60 MQA+TLPA GI V+N QRRRAI+ATVIGNGLEWFDFTVYSFFAVIIAKLFFPTGNDLTS Sbjct: 1 MQASTLPADGIVSVSNQQRRRAIVATVIGNGLEWFDFTVYSFFAVIIAKLFFPTGNDLTS 60 Query: 61 LLLAVATFGVGFFMRPVGGILLGIYADRVGRKAALSVTILLMAVGTTMIGLAPTYESVGL 120 LLLAVATFGVGFFMRPVGGILLGIYADRVGRKAALSVTILLMAVGTTMIGLAPTYES+GL Sbjct: 61 LLLAVATFGVGFFMRPVGGILLGIYADRVGRKAALSVTILLMAVGTTMIGLAPTYESIGL 120 Query: 121 FAPLIIVVARLLQGFSAGGEMGSATAFLTEYAPERERAYYSSWIQASIGVAVLLGAAVGT 180 FAPLIIVVARLLQGFSAGGEMGSATAFLTEYAPERERAYYSSWIQASIGVAVLLGAAVGT Sbjct: 121 FAPLIIVVARLLQGFSAGGEMGSATAFLTEYAPERERAYYSSWIQASIGVAVLLGAAVGT 180 Query: 181 FVTTSLDPQALASWGWRLPFLLGIIIGPVGYYIRNHLEETPTFLEEKDKTDSPLKEVIRN 240 FVT SLD ALASWGWRLPFLLGIIIGPVGYYIR+HLEETPTFLEEKDKTDSPLKEVIRN Sbjct: 181 FVTASLDAAALASWGWRLPFLLGIIIGPVGYYIRHHLEETPTFLEEKDKTDSPLKEVIRN 240 Query: 241 FPRETSASFSMVILWTVCTYVLLFYMPTYSVKVLKLPQTTGFIAGMVGGLCIMVFAPVVG 300 FPRETSASFSMVILWTVCTYVLLFYMPTYSVKVLKLPQTTGFIAGMVGGLCIMV AP+VG Sbjct: 241 FPRETSASFSMVILWTVCTYVLLFYMPTYSVKVLKLPQTTGFIAGMVGGLCIMVLAPIVG 300 Query: 301 RIADRYGRRGLLSGAALLILLLAYPMFAYINHAPGLGSLLVFQLVFGILIATYTGPILAA 360 R+ADR GRR LLSG+A LIL+LAYPMFAYIN AP L +LL+FQLVFG LIA YTGPILAA Sbjct: 301 RLADRIGRRPLLSGSAALILMLAYPMFAYINSAPSLSTLLIFQLVFGTLIAAYTGPILAA 360 Query: 361 FSELFPAKVLSTGLSVAYNLAVTIFGGFASFFITWLIAATGNNMAPAFYVMIAAAISFVG 420 FSELFPAKVLSTGLSVAYNLAVTIFGGFASFFITWLIAATG+ MAPAFYVMIAAAISFVG Sbjct: 361 FSELFPAKVLSTGLSVAYNLAVTIFGGFASFFITWLIAATGSTMAPAFYVMIAAAISFVG 420 Query: 421 TRFVREPQYLQQH 433 TRFVREPQYLQ H Sbjct: 421 TRFVREPQYLQPH 433 >ref|YP_295112.1| major facilitator transporter [Ralstonia eutropha JMP134] gb|AAZ60268.1| General substrate transporter:Major facilitator superfamily MFS_1 [Ralstonia eutropha JMP134] Length = 447 Score = 651 bits (1680), Expect = 0.0, Method: Composition-based stats. Identities = 357/426 (83%), Positives = 390/426 (91%) Query: 7 PAGGIPVVTNHQRRRAIIATVIGNGLEWFDFTVYSFFAVIIAKLFFPTGNDLTSLLLAVA 66 PA V+ QRRRAIIATVIGNGLEWFDFTVYSFFA+IIAKLFFPTGNDL+SLLLAVA Sbjct: 21 PARSAAVIEPAQRRRAIIATVIGNGLEWFDFTVYSFFAIIIAKLFFPTGNDLSSLLLAVA 80 Query: 67 TFGVGFFMRPVGGILLGIYADRVGRKAALSVTILLMAVGTTMIGLAPTYESVGLFAPLII 126 TFGVGFFMRPVGGI+LG+YADRVGRKAALS+TILLMA+GTT+IG+APTYE +G+FAPL+I Sbjct: 81 TFGVGFFMRPVGGIVLGVYADRVGRKAALSMTILLMALGTTLIGIAPTYEQMGIFAPLLI 140 Query: 127 VVARLLQGFSAGGEMGSATAFLTEYAPERERAYYSSWIQASIGVAVLLGAAVGTFVTTSL 186 VVARLLQGFSAGGEMG ATAFLTEYAPERERAYYSSWIQASIGVAVLLGAAVGTFVT SL Sbjct: 141 VVARLLQGFSAGGEMGGATAFLTEYAPERERAYYSSWIQASIGVAVLLGAAVGTFVTRSL 200 Query: 187 DPQALASWGWRLPFLLGIIIGPVGYYIRNHLEETPTFLEEKDKTDSPLKEVIRNFPRETS 246 P+AL SWGWRLPFLLGI+IGPVGYYIR+HL+ETPTF E ++ DSPLKEV + +PRET Sbjct: 201 SPEALNSWGWRLPFLLGIVIGPVGYYIRHHLDETPTFRETDERADSPLKEVFQAYPRETL 260 Query: 247 ASFSMVILWTVCTYVLLFYMPTYSVKVLKLPQTTGFIAGMVGGLCIMVFAPVVGRIADRY 306 ASFSMVILWTVCTYVLLFYMPTY+VKVL +PQ+ GF+AGMVGG IM+FAP+VGR+ADR Sbjct: 261 ASFSMVILWTVCTYVLLFYMPTYAVKVLNVPQSDGFVAGMVGGCTIMLFAPLVGRLADRI 320 Query: 307 GRRGLLSGAALLILLLAYPMFAYINHAPGLGSLLVFQLVFGILIATYTGPILAAFSELFP 366 GRR LLSG+ALLIL+LA+PMFAYINH PGL SLLVFQLVFGILIA YTGPILAAFSELFP Sbjct: 321 GRRALLSGSALLILVLAWPMFAYINHVPGLSSLLVFQLVFGILIAAYTGPILAAFSELFP 380 Query: 367 AKVLSTGLSVAYNLAVTIFGGFASFFITWLIAATGNNMAPAFYVMIAAAISFVGTRFVRE 426 A+VLSTGLSVAYN AVTIFGGFASF ITWLIA TG++MAPA YVMIAAAIS GTR VRE Sbjct: 381 ARVLSTGLSVAYNFAVTIFGGFASFIITWLIATTGSSMAPAIYVMIAAAISLAGTRLVRE 440 Query: 427 PQYLQQ 432 P YLQQ Sbjct: 441 PAYLQQ 446 >ref|YP_841023.1| major facilitator superfamily transporter MHS family protein [Ralstonia eutropha H16] emb|CAJ96293.1| MFS transporter, MHS family [Ralstonia eutropha H16] Length = 441 Score = 640 bits (1651), Expect = 0.0, Method: Composition-based stats. Identities = 353/415 (85%), Positives = 388/415 (93%) Query: 18 QRRRAIIATVIGNGLEWFDFTVYSFFAVIIAKLFFPTGNDLTSLLLAVATFGVGFFMRPV 77 QRRRAIIATVIGNGLEWFDFTVYSFFAVIIAKLFFPTG+DL+SLLLAVATFGVGFFMRPV Sbjct: 26 QRRRAIIATVIGNGLEWFDFTVYSFFAVIIAKLFFPTGDDLSSLLLAVATFGVGFFMRPV 85 Query: 78 GGILLGIYADRVGRKAALSVTILLMAVGTTMIGLAPTYESVGLFAPLIIVVARLLQGFSA 137 GGI+LGIYADRVGRKAALS+TILLMA+GTT+IG+APTY+ +GLFAPL+IVVARL+QGFSA Sbjct: 86 GGIVLGIYADRVGRKAALSLTILLMALGTTLIGIAPTYDQIGLFAPLLIVVARLMQGFSA 145 Query: 138 GGEMGSATAFLTEYAPERERAYYSSWIQASIGVAVLLGAAVGTFVTTSLDPQALASWGWR 197 GGEMG ATAFLTEYAP R+RAYYSSWIQASIGVAVLLGAAVGTFVT+SL +AL SWGWR Sbjct: 146 GGEMGGATAFLTEYAPARQRAYYSSWIQASIGVAVLLGAAVGTFVTSSLSTEALNSWGWR 205 Query: 198 LPFLLGIIIGPVGYYIRNHLEETPTFLEEKDKTDSPLKEVIRNFPRETSASFSMVILWTV 257 LPFLLGI+IGPVGYYIR+HL+ETPTF + ++ DSPLKE+++ +PRET ASFSMVILWTV Sbjct: 206 LPFLLGIVIGPVGYYIRHHLDETPTFRDNAERADSPLKEIVQAYPRETLASFSMVILWTV 265 Query: 258 CTYVLLFYMPTYSVKVLKLPQTTGFIAGMVGGLCIMVFAPVVGRIADRYGRRGLLSGAAL 317 CTYVLLFYMPTY+VKVLK+PQ GFIAGM GG IMVFAP+VG +ADR GRR LLSG+AL Sbjct: 266 CTYVLLFYMPTYAVKVLKVPQADGFIAGMAGGSAIMVFAPLVGLLADRIGRRVLLSGSAL 325 Query: 318 LILLLAYPMFAYINHAPGLGSLLVFQLVFGILIATYTGPILAAFSELFPAKVLSTGLSVA 377 LIL+LA+PMFAYINHAPGL SLLVFQLVFG+LIATYTGPILAAFSELFPA+VLSTGLSVA Sbjct: 326 LILVLAWPMFAYINHAPGLASLLVFQLVFGVLIATYTGPILAAFSELFPARVLSTGLSVA 385 Query: 378 YNLAVTIFGGFASFFITWLIAATGNNMAPAFYVMIAAAISFVGTRFVREPQYLQQ 432 YN AVTIFGGFASF ITWLIA TG++MAPA YVMIAAAIS VGTRFVREP YLQQ Sbjct: 386 YNFAVTIFGGFASFIITWLIATTGSSMAPAIYVMIAAAISLVGTRFVREPSYLQQ 440 >ref|YP_004681701.1| citrate-proton symporter CitA [Cupriavidus necator N-1] gb|AEI80469.1| citrate-proton symporter CitA [Cupriavidus necator N-1] Length = 441 Score = 634 bits (1635), Expect = e-180, Method: Composition-based stats. Identities = 348/415 (83%), Positives = 385/415 (92%) Query: 18 QRRRAIIATVIGNGLEWFDFTVYSFFAVIIAKLFFPTGNDLTSLLLAVATFGVGFFMRPV 77 QRRRAIIATVIGNGLEWFDFTVYSFFAVIIAKLFFPTG+DL+SLLLAVATFGVGFFMRPV Sbjct: 26 QRRRAIIATVIGNGLEWFDFTVYSFFAVIIAKLFFPTGDDLSSLLLAVATFGVGFFMRPV 85 Query: 78 GGILLGIYADRVGRKAALSVTILLMAVGTTMIGLAPTYESVGLFAPLIIVVARLLQGFSA 137 GGI+LGIYADRVGRKAALS+TILLMA+GTT+IG+APTY+ VG+ APL+IV+ARL+QGFSA Sbjct: 86 GGIVLGIYADRVGRKAALSLTILLMALGTTLIGIAPTYDQVGILAPLLIVIARLMQGFSA 145 Query: 138 GGEMGSATAFLTEYAPERERAYYSSWIQASIGVAVLLGAAVGTFVTTSLDPQALASWGWR 197 GGEMG ATAFLTEYAP R+RAYYSSWIQASIGVAVLLGAAVGTFVT+SL +AL SWGWR Sbjct: 146 GGEMGGATAFLTEYAPARQRAYYSSWIQASIGVAVLLGAAVGTFVTSSLSTEALNSWGWR 205 Query: 198 LPFLLGIIIGPVGYYIRNHLEETPTFLEEKDKTDSPLKEVIRNFPRETSASFSMVILWTV 257 LPFLLGI+IGPVGYYIR+HL+ETPTF + ++ DSPLKE+++ +PRET ASFSMVILWTV Sbjct: 206 LPFLLGIVIGPVGYYIRHHLDETPTFRDNAERADSPLKEIVQAYPRETLASFSMVILWTV 265 Query: 258 CTYVLLFYMPTYSVKVLKLPQTTGFIAGMVGGLCIMVFAPVVGRIADRYGRRGLLSGAAL 317 CTYVLLFYMPTY+VKVLK+PQ GFIAGM GG IMVFAP+VG +ADR GRR LLSG+AL Sbjct: 266 CTYVLLFYMPTYAVKVLKVPQADGFIAGMAGGSAIMVFAPLVGLLADRIGRRVLLSGSAL 325 Query: 318 LILLLAYPMFAYINHAPGLGSLLVFQLVFGILIATYTGPILAAFSELFPAKVLSTGLSVA 377 LIL+LA+PMF +INH PGL SLLVFQLVFG+LIATYTGPILAAFSELFPA+VLSTGLSVA Sbjct: 326 LILVLAWPMFTFINHVPGLSSLLVFQLVFGVLIATYTGPILAAFSELFPARVLSTGLSVA 385 Query: 378 YNLAVTIFGGFASFFITWLIAATGNNMAPAFYVMIAAAISFVGTRFVREPQYLQQ 432 YN AVTIFGGFASF ITWLIA TG++MAPA YVMIAAAIS VGTRFVREP YLQQ Sbjct: 386 YNFAVTIFGGFASFIITWLIATTGSSMAPAIYVMIAAAISLVGTRFVREPSYLQQ 440 >ref|ZP_04942237.1| General substrate transporter:Major facilitator superfamily [Burkholderia cenocepacia PC184] gb|EAY65408.1| General substrate transporter:Major facilitator superfamily [Burkholderia cenocepacia PC184] Length = 477 Score = 609 bits (1571), Expect = e-172, Method: Composition-based stats. Identities = 334/431 (77%), Positives = 376/431 (87%), Gaps = 3/431 (0%) Query: 1 MQATTLPAGGIPV-VTNHQRRRAIIATVIGNGLEWFDFTVYSFFAVIIAKLFFPTGNDLT 59 MQ T P V QRRRAI+ATVIGNGLEWFDFTVYSFFAVIIAKLFFPTGN+LT Sbjct: 40 MQGTLSPRAAPSVDAAVQQRRRAIVATVIGNGLEWFDFTVYSFFAVIIAKLFFPTGNELT 99 Query: 60 SLLLAVATFGVGFFMRPVGGILLGIYADRVGRKAALSVTILLMAVGTTMIGLAPTYESVG 119 S+LL VATFGVGFFMRPVGGI+LG+YAD+VGRKAALS+TILLMA GT +IG+APTYE G Sbjct: 100 SVLLTVATFGVGFFMRPVGGIVLGVYADKVGRKAALSLTILLMAAGTALIGIAPTYEQAG 159 Query: 120 LFAPLIIVVARLLQGFSAGGEMGSATAFLTEYAPERERAYYSSWIQASIGVAVLLGAAVG 179 + APL+IVVARLLQGFSAGGEMG ATAFLTEYAP +RAYYSSWIQ+SIG AVLLGAA G Sbjct: 160 IAAPLMIVVARLLQGFSAGGEMGGATAFLTEYAPPEKRAYYSSWIQSSIGFAVLLGAATG 219 Query: 180 TFVTTSLDPQALASWGWRLPFLLGIIIGPVGYYIRNHLEETPTF--LEEKDKTDSPLKEV 237 TFVTTSLD QAL SWGWRLPFLLGII+GPVGY+IR+H++ETP F +E + K SPLKEV Sbjct: 220 TFVTTSLDTQALHSWGWRLPFLLGIIVGPVGYFIRSHIDETPAFSAVESQAKESSPLKEV 279 Query: 238 IRNFPRETSASFSMVILWTVCTYVLLFYMPTYSVKVLKLPQTTGFIAGMVGGLCIMVFAP 297 + +PRET ASFSMVILWTVCTYVLLFYMPTYSV+ L LPQ+TGF AGMVGGL IM +P Sbjct: 280 LHTYPRETFASFSMVILWTVCTYVLLFYMPTYSVRTLHLPQSTGFTAGMVGGLMIMCCSP 339 Query: 298 VVGRIADRYGRRGLLSGAALLILLLAYPMFAYINHAPGLGSLLVFQLVFGILIATYTGPI 357 +VGR+AD +GRR LSG+AL IL+LA+PMF++INHAPG SL+VFQ VFG+LIATYTGPI Sbjct: 340 IVGRLADAWGRRVFLSGSALAILVLAWPMFSWINHAPGFASLIVFQAVFGVLIATYTGPI 399 Query: 358 LAAFSELFPAKVLSTGLSVAYNLAVTIFGGFASFFITWLIAATGNNMAPAFYVMIAAAIS 417 LAAF+ELFP KVLSTGLSVAYN AVTIFGGFA F ITWLIA TG+NMAPAFYVM+AAA+S Sbjct: 400 LAAFAELFPTKVLSTGLSVAYNFAVTIFGGFAPFLITWLIARTGSNMAPAFYVMLAAAVS 459 Query: 418 FVGTRFVREPQ 428 FVGTRFV++ + Sbjct: 460 FVGTRFVKDAK 470