BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3550.p (409 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773668.1| prolidase [Herbaspirillum seropedicae SmR1] ... 743 0.0 ref|YP_295113.1| amidohydrolase [Ralstonia eutropha JMP134] >gi|... 610 e-172 ref|YP_841024.1| M38 familypeptidase [Ralstonia eutropha H16] >g... 598 e-169 ref|YP_004681702.1| peptidase M38 family [Cupriavidus necator N-... 597 e-168 ref|YP_558003.1| putative prolidase (Xaa-Pro dipeptidase) [Burkh... 574 e-161 >ref|YP_003773668.1| prolidase [Herbaspirillum seropedicae SmR1] gb|ADJ61760.1| prolidase protein [Herbaspirillum seropedicae SmR1] Length = 409 Score = 743 bits (1917), Expect = 0.0, Method: Composition-based stats. Identities = 399/409 (97%), Positives = 404/409 (98%) Query: 1 MTKILLKGGNVLDPALGSLFPRHDVLIEKDRIIDVSATPLEVSGARVIDVTGKTVMPGLI 60 MTKILLKGGNVLDPALGSLFPRHDVLI+KDRI+DVSATPLEVSGARVIDV GKTVMPGLI Sbjct: 1 MTKILLKGGNVLDPALGSLFPRHDVLIDKDRIVDVSATPLEVSGARVIDVAGKTVMPGLI 60 Query: 61 DCHVHVLASLANLGLNALQPGSLTSIRALHIVEAMLNRGFTSVRDAGGADWGLAQAIAIG 120 DCHVHVLASLANLGLNALQPGSLTSIRAL IVEAMLNRGFTSVRDAGGADWGLAQAIAIG Sbjct: 61 DCHVHVLASLANLGLNALQPGSLTSIRALPIVEAMLNRGFTSVRDAGGADWGLAQAIAIG 120 Query: 121 LVPGPRIFPSGKALSQTGGHGDFRPRSDVLEPCSCAFRAGAIARVADGVDAVRLAAREEL 180 LVPGPRIFPSGKALSQTGGHGDFRPRSDVLEPCSCAFRAGAIARVADGVDAVRLAAREEL Sbjct: 121 LVPGPRIFPSGKALSQTGGHGDFRPRSDVLEPCSCAFRAGAIARVADGVDAVRLAAREEL 180 Query: 181 QKGATQIKIMASGGVASPTDPIGNTQYSEDEIRAIVAEAEAAQTYVMAHAYTGRAIARAV 240 QKGATQIKIMASGGVASPTDPIGNTQYSEDEIRAIVAEAEAAQTYVMAHAYTGRAIARAV Sbjct: 181 QKGATQIKIMASGGVASPTDPIGNTQYSEDEIRAIVAEAEAAQTYVMAHAYTGRAIARAV 240 Query: 241 RCGVRTIEHGNLVDAEAARVMREHGAFVVPTLVTYDSLARDGARLGLPPDSVAKIESVRQ 300 RCGVRTIEHGNLVDA+AARVM EHGAFVVPTLVTYDSLARDGARLGLPPDSVAKIESVRQ Sbjct: 241 RCGVRTIEHGNLVDAQAARVMHEHGAFVVPTLVTYDSLARDGARLGLPPDSVAKIESVRQ 300 Query: 301 AGRDSLRIYAEHGVQMGFGSDLLGEMHQDQSTEFLIRAEILGNLETIRSATSIAAAILQR 360 AGRDSLRIYAEHGVQMGFGSDLLGEMHQDQS EF+IRAEILGNLETIRSATSIAAAILQR Sbjct: 301 AGRDSLRIYAEHGVQMGFGSDLLGEMHQDQSQEFIIRAEILGNLETIRSATSIAAAILQR 360 Query: 361 EGELGTVRAGALADLIVVDGNPLQDITLLTGQGEHLSLVMQSGHIHRSR 409 EGELGTVRAGALADLIVVDGNPLQDITLLTGQGEHL LVMQ+GHIHRSR Sbjct: 361 EGELGTVRAGALADLIVVDGNPLQDITLLTGQGEHLCLVMQAGHIHRSR 409 >ref|YP_295113.1| amidohydrolase [Ralstonia eutropha JMP134] gb|AAZ60269.1| Amidohydrolase [Ralstonia eutropha JMP134] Length = 412 Score = 610 bits (1573), Expect = e-172, Method: Composition-based stats. Identities = 328/407 (80%), Positives = 361/407 (88%), Gaps = 1/407 (0%) Query: 1 MTKILLKGGNVLDPALGSLFPRHDVLIEKDRIIDVSATPLEVSGARVIDVTGKTVMPGLI 60 + +IL GG+VLDP +G L HDVL+E +RI+ V ++ A+ ID GKTVMPGLI Sbjct: 4 IPQILFHGGDVLDPGMGELLRGHDVLVEGERIVAVGPA-IDAPNAQRIDARGKTVMPGLI 62 Query: 61 DCHVHVLASLANLGLNALQPGSLTSIRALHIVEAMLNRGFTSVRDAGGADWGLAQAIAIG 120 DCHVHVLASLANLGLNA+QP L +IRAL I++ ML+RGFT+VRDAGGADWGL+QA+A G Sbjct: 63 DCHVHVLASLANLGLNAVQPNVLVAIRALPIMKGMLDRGFTTVRDAGGADWGLSQAVATG 122 Query: 121 LVPGPRIFPSGKALSQTGGHGDFRPRSDVLEPCSCAFRAGAIARVADGVDAVRLAAREEL 180 LVPGPRIFPSGKALSQTGGHGDFRPRSDVLEPCSCAFRAGAIARVADGVDAVRLA REE+ Sbjct: 123 LVPGPRIFPSGKALSQTGGHGDFRPRSDVLEPCSCAFRAGAIARVADGVDAVRLAVREEI 182 Query: 181 QKGATQIKIMASGGVASPTDPIGNTQYSEDEIRAIVAEAEAAQTYVMAHAYTGRAIARAV 240 QKGATQIKIMASGGVASPTDPIGNTQYSEDEIRAIVAEAEAAQTYVMAHAYTGRAI RAV Sbjct: 183 QKGATQIKIMASGGVASPTDPIGNTQYSEDEIRAIVAEAEAAQTYVMAHAYTGRAITRAV 242 Query: 241 RCGVRTIEHGNLVDAEAARVMREHGAFVVPTLVTYDSLARDGARLGLPPDSVAKIESVRQ 300 RCGVRTIEHGNLVD AA+ MR HGAFVVPTLVTYD+LARDGARLGLP DSVAKIE+VRQ Sbjct: 243 RCGVRTIEHGNLVDPAAAKEMRRHGAFVVPTLVTYDALARDGARLGLPADSVAKIETVRQ 302 Query: 301 AGRDSLRIYAEHGVQMGFGSDLLGEMHQDQSTEFLIRAEILGNLETIRSATSIAAAILQR 360 AGR+SLRIYA+ GV MG+GSDLLGEMH Q+ EF IRAE+LGNLE IRSATSIAAAILQR Sbjct: 303 AGRESLRIYADAGVPMGYGSDLLGEMHDHQAEEFRIRAELLGNLEAIRSATSIAAAILQR 362 Query: 361 EGELGTVRAGALADLIVVDGNPLQDITLLTGQGEHLSLVMQSGHIHR 407 +GELG VRAGA ADL++VDGNPL DI L+ GQGEHLS+VMQ+G IHR Sbjct: 363 DGELGAVRAGATADLLLVDGNPLHDIGLIAGQGEHLSVVMQAGRIHR 409 >ref|YP_841024.1| M38 familypeptidase [Ralstonia eutropha H16] emb|CAJ96294.1| putative peptidase, M38 family [Ralstonia eutropha H16] Length = 412 Score = 598 bits (1542), Expect = e-169, Method: Composition-based stats. Identities = 326/405 (80%), Positives = 357/405 (88%), Gaps = 1/405 (0%) Query: 3 KILLKGGNVLDPALGSLFPRHDVLIEKDRIIDVSATPLEVSGARVIDVTGKTVMPGLIDC 62 +IL GG+VL+PA G L HDVL+E +RI V ++ A+ ID GKTVMPGLIDC Sbjct: 6 QILFHGGDVLEPATGELLRGHDVLVEGERIAAVGPA-IDAPNAQRIDARGKTVMPGLIDC 64 Query: 63 HVHVLASLANLGLNALQPGSLTSIRALHIVEAMLNRGFTSVRDAGGADWGLAQAIAIGLV 122 HVHVLASLANLGLNA+QP L +IRAL I++ ML RGFT+VRDAGGADWGL+QA+A GLV Sbjct: 65 HVHVLASLANLGLNAVQPNVLVAIRALPIMQRMLERGFTTVRDAGGADWGLSQAVATGLV 124 Query: 123 PGPRIFPSGKALSQTGGHGDFRPRSDVLEPCSCAFRAGAIARVADGVDAVRLAAREELQK 182 PGPRIF SGKALSQTGGHGDFRPRSDVLEPCSCAFRAGAIARV DGVDAVRLA REE+QK Sbjct: 125 PGPRIFASGKALSQTGGHGDFRPRSDVLEPCSCAFRAGAIARVVDGVDAVRLAVREEIQK 184 Query: 183 GATQIKIMASGGVASPTDPIGNTQYSEDEIRAIVAEAEAAQTYVMAHAYTGRAIARAVRC 242 GA+QIKIMASGGVASPTDPIGNTQYSEDEIRAIVAEAEAAQTYVMAHAYTGRAI RAVRC Sbjct: 185 GASQIKIMASGGVASPTDPIGNTQYSEDEIRAIVAEAEAAQTYVMAHAYTGRAITRAVRC 244 Query: 243 GVRTIEHGNLVDAEAARVMREHGAFVVPTLVTYDSLARDGARLGLPPDSVAKIESVRQAG 302 GVRTIEHGNLVD ++A MR HGAFVVPTLVTYD+LARDGARLGLP DSVAKIE+VRQAG Sbjct: 245 GVRTIEHGNLVDRDSADEMRRHGAFVVPTLVTYDALARDGARLGLPADSVAKIETVRQAG 304 Query: 303 RDSLRIYAEHGVQMGFGSDLLGEMHQDQSTEFLIRAEILGNLETIRSATSIAAAILQREG 362 RDSLRIYA+ GV MG+GSDLLGEMH Q+ EF IRA++LGNLE IRSATSIAAAILQREG Sbjct: 305 RDSLRIYADAGVPMGYGSDLLGEMHDHQAEEFRIRADLLGNLEAIRSATSIAAAILQREG 364 Query: 363 ELGTVRAGALADLIVVDGNPLQDITLLTGQGEHLSLVMQSGHIHR 407 ELGTVRAGALADL++VDGNPL DI L+ GQGE LS+VMQ+G IHR Sbjct: 365 ELGTVRAGALADLLLVDGNPLADIGLIAGQGERLSVVMQAGRIHR 409 >ref|YP_004681702.1| peptidase M38 family [Cupriavidus necator N-1] gb|AEI80470.1| peptidase M38 family [Cupriavidus necator N-1] Length = 412 Score = 597 bits (1538), Expect = e-168, Method: Composition-based stats. Identities = 326/405 (80%), Positives = 355/405 (87%), Gaps = 1/405 (0%) Query: 3 KILLKGGNVLDPALGSLFPRHDVLIEKDRIIDVSATPLEVSGARVIDVTGKTVMPGLIDC 62 +IL GG+VL+P G L HDVL+E +RI V ++ A+ ID GKTVMPGLIDC Sbjct: 6 QILFHGGDVLEPGTGELLRCHDVLVEGERIAAVGPA-IDAPSAQRIDARGKTVMPGLIDC 64 Query: 63 HVHVLASLANLGLNALQPGSLTSIRALHIVEAMLNRGFTSVRDAGGADWGLAQAIAIGLV 122 HVHVLASLANLGLNA+QP L +IRAL I++ ML RGFT+VRDAGGADWGL+QA+A GLV Sbjct: 65 HVHVLASLANLGLNAVQPNVLVAIRALPIMQRMLERGFTTVRDAGGADWGLSQAVATGLV 124 Query: 123 PGPRIFPSGKALSQTGGHGDFRPRSDVLEPCSCAFRAGAIARVADGVDAVRLAAREELQK 182 PGPRIF SGKALSQTGGHGDFRPRSDVLEPCSCAFRAGAIARV DGVDAVRLA REE+QK Sbjct: 125 PGPRIFASGKALSQTGGHGDFRPRSDVLEPCSCAFRAGAIARVVDGVDAVRLAVREEIQK 184 Query: 183 GATQIKIMASGGVASPTDPIGNTQYSEDEIRAIVAEAEAAQTYVMAHAYTGRAIARAVRC 242 GA+QIKIMASGGVASPTDPIGNTQYSEDEIRAIVAEAEAAQTYVMAHAYTGRAI RAVRC Sbjct: 185 GASQIKIMASGGVASPTDPIGNTQYSEDEIRAIVAEAEAAQTYVMAHAYTGRAITRAVRC 244 Query: 243 GVRTIEHGNLVDAEAARVMREHGAFVVPTLVTYDSLARDGARLGLPPDSVAKIESVRQAG 302 GVRTIEHGNLVD AA MR+HGAF VPTLVTYD+LARDGARLGLP DSVAKIE+VRQAG Sbjct: 245 GVRTIEHGNLVDRAAADEMRKHGAFAVPTLVTYDALARDGARLGLPADSVAKIETVRQAG 304 Query: 303 RDSLRIYAEHGVQMGFGSDLLGEMHQDQSTEFLIRAEILGNLETIRSATSIAAAILQREG 362 RDSLRIYA+ GV MG+GSDLLGEMH Q+ EF IRAE+LGNLE IRSATSIAAAILQREG Sbjct: 305 RDSLRIYADAGVPMGYGSDLLGEMHDHQAEEFRIRAELLGNLEAIRSATSIAAAILQREG 364 Query: 363 ELGTVRAGALADLIVVDGNPLQDITLLTGQGEHLSLVMQSGHIHR 407 ELGTVRAGALADL++VDGNPL DI L+ GQGE LS+VMQ+G IHR Sbjct: 365 ELGTVRAGALADLLLVDGNPLADIGLIAGQGERLSVVMQAGRIHR 409 >ref|YP_558003.1| putative prolidase (Xaa-Pro dipeptidase) [Burkholderia xenovorans LB400] gb|ABE29951.1| Putative prolidase (Xaa-Pro dipeptidase) [Burkholderia xenovorans LB400] Length = 436 Score = 574 bits (1479), Expect = e-161, Method: Composition-based stats. Identities = 300/409 (73%), Positives = 342/409 (83%) Query: 1 MTKILLKGGNVLDPALGSLFPRHDVLIEKDRIIDVSATPLEVSGARVIDVTGKTVMPGLI 60 M+ ++ GGNVLD A G L V+IE I++V+ P+++ ARVID GKTVMPGLI Sbjct: 22 MSITVISGGNVLDLAQGVLLEHQYVVIENGHIVEVTDRPVDLPNARVIDARGKTVMPGLI 81 Query: 61 DCHVHVLASLANLGLNALQPGSLTSIRALHIVEAMLNRGFTSVRDAGGADWGLAQAIAIG 120 DCHVHVLAS ANLG NA QP LT+IRAL I++AML RGFTSVRDAGGADW L QA+ G Sbjct: 82 DCHVHVLASRANLGTNATQPNILTAIRALPILKAMLGRGFTSVRDAGGADWALTQALESG 141 Query: 121 LVPGPRIFPSGKALSQTGGHGDFRPRSDVLEPCSCAFRAGAIARVADGVDAVRLAAREEL 180 L+PGPRIFPSGKALSQTGGHGDFRPR D+LEPCSC FRAGAIARV DGVDAVRLA REE+ Sbjct: 142 LIPGPRIFPSGKALSQTGGHGDFRPRGDMLEPCSCCFRAGAIARVVDGVDAVRLAVREEI 201 Query: 181 QKGATQIKIMASGGVASPTDPIGNTQYSEDEIRAIVAEAEAAQTYVMAHAYTGRAIARAV 240 QKGATQIKIMASGGVASPTDPIGNTQYSEDEIRAIVAEAEAA TYVMAHAYTGRAI+RA+ Sbjct: 202 QKGATQIKIMASGGVASPTDPIGNTQYSEDEIRAIVAEAEAANTYVMAHAYTGRAISRAI 261 Query: 241 RCGVRTIEHGNLVDAEAARVMREHGAFVVPTLVTYDSLARDGARLGLPPDSVAKIESVRQ 300 RCGVRTIEHGNLVD AA++MREHGAFVVPTLVTYD+LA+ GA GLP DS+AK+E+VRQ Sbjct: 262 RCGVRTIEHGNLVDEAAAKLMREHGAFVVPTLVTYDALAKHGADYGLPADSIAKVETVRQ 321 Query: 301 AGRDSLRIYAEHGVQMGFGSDLLGEMHQDQSTEFLIRAEILGNLETIRSATSIAAAILQR 360 AGRDSL+IYA GV MGFGSDLLGEMH QS E IRA++LGNLE +RSAT+IAA I+ Sbjct: 322 AGRDSLQIYANAGVPMGFGSDLLGEMHTFQSDELRIRADVLGNLEALRSATTIAADIVDL 381 Query: 361 EGELGTVRAGALADLIVVDGNPLQDITLLTGQGEHLSLVMQSGHIHRSR 409 G+LG ++AGA+AD++VVDG+PL DI +LTGQGE + V Q G + R Sbjct: 382 SGKLGVIKAGAIADILVVDGDPLTDIGVLTGQGERIEYVFQRGEVVSER 430