BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3549.p (327 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773669.1| transcription regulator protein [Herbaspiril... 554 e-156 ref|YP_841025.1| LysR family transcriptional regulator [Ralstoni... 457 e-127 ref|YP_295114.1| LysR family transcriptional regulator [Ralstoni... 456 e-126 ref|YP_004681703.1| LysR family transcriptional regulator [Cupri... 456 e-126 ref|YP_002233407.1| LysR family regulatory protein [Burkholderia... 374 e-101 >ref|YP_003773669.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ61761.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 301 Score = 554 bits (1428), Expect = e-156, Method: Composition-based stats. Identities = 280/301 (93%), Positives = 290/301 (96%) Query: 27 MRISPLPPLPSLIAFEAAMRHGSFTRAAAELHLTQSAISRQIAQLERFLGKKLFLREPRA 86 MRISPLPPLPSLIAFEAAMRHGSFTRAAAELHLTQSAISRQIAQLERFLGKKLFLREPRA Sbjct: 1 MRISPLPPLPSLIAFEAAMRHGSFTRAAAELHLTQSAISRQIAQLERFLGKKLFLREPRA 60 Query: 87 LRLTVSGQRYAALVQRLLVDCAEATEDIMKRKGHQELTVACSQGVAVLWLTPRLARFRAQ 146 LRLTVSGQRYAALVQRLLVDCAEATEDIMKRKGHQELTVACSQGVAVLWLTPRLARFRA+ Sbjct: 61 LRLTVSGQRYAALVQRLLVDCAEATEDIMKRKGHQELTVACSQGVAVLWLTPRLARFRAR 120 Query: 147 HPDCHLRLVVNDSLAQLSETDFDMGIYFLRDGPPSGLAVRRLYDEEVFPVCSPAYLKGRT 206 HPDCHLRLVVNDSLAQLSETDFDMGIYFLRDGPP+GLA RRLYDEEVFPVCSP YL GR Sbjct: 121 HPDCHLRLVVNDSLAQLSETDFDMGIYFLRDGPPAGLAARRLYDEEVFPVCSPGYLDGRL 180 Query: 207 LAPADLPQETLLMLEDGQRQWMSWQNWLAHNEVDDVRIEQQILSNQYPVLLQLAMEGQGI 266 LAP DL +TLL LEDGQRQWMSWQNW+AHN + DVRIE QILSNQYPVLLQLAMEGQG+ Sbjct: 181 LAPEDLRHQTLLTLEDGQRQWMSWQNWMAHNGMPDVRIEHQILSNQYPVLLQLAMEGQGV 240 Query: 267 VLAWRHMIDACMEQGLLVRACEANASLGGGYYAVWPRDRIEHAAARAFRSWLVAESEASL 326 VLAWRHMIDACMEQGLLVRAC+A+ASLGGGYYAVWPRDRIEHAAARAFRSWLVAESE++L Sbjct: 241 VLAWRHMIDACMEQGLLVRACQASASLGGGYYAVWPRDRIEHAAARAFRSWLVAESESTL 300 Query: 327 L 327 L Sbjct: 301 L 301 >ref|YP_841025.1| LysR family transcriptional regulator [Ralstonia eutropha H16] emb|CAJ96295.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16] Length = 310 Score = 457 bits (1177), Expect = e-127, Method: Composition-based stats. Identities = 228/296 (77%), Positives = 255/296 (86%) Query: 27 MRISPLPPLPSLIAFEAAMRHGSFTRAAAELHLTQSAISRQIAQLERFLGKKLFLREPRA 86 MRISPLPPLP+L+AFEAAMRHGSFTRAAAELHLTQSAISRQ+AQLE FLG+KLF+REPRA Sbjct: 10 MRISPLPPLPNLVAFEAAMRHGSFTRAAAELHLTQSAISRQVAQLEDFLGRKLFIREPRA 69 Query: 87 LRLTVSGQRYAALVQRLLVDCAEATEDIMKRKGHQELTVACSQGVAVLWLTPRLARFRAQ 146 LRLTVSGQRYA +VQRLLV CAEATED+MK + H LTVACS GVAVLWLTPRLA FR Sbjct: 70 LRLTVSGQRYAEVVQRLLVGCAEATEDVMKVRSHTALTVACSSGVAVLWLTPRLASFREA 129 Query: 147 HPDCHLRLVVNDSLAQLSETDFDMGIYFLRDGPPSGLAVRRLYDEEVFPVCSPAYLKGRT 206 HP+ LRL VNDSLA LS +FD+G+Y+LR+GPP GLA RRLY EEVFPVC+P YL GRT Sbjct: 130 HPEIQLRLTVNDSLASLSPAEFDIGMYYLREGPPPGLAARRLYGEEVFPVCAPGYLNGRT 189 Query: 207 LAPADLPQETLLMLEDGQRQWMSWQNWLAHNEVDDVRIEQQILSNQYPVLLQLAMEGQGI 266 LAPA L ETLLML+DGQRQWMSWQ WLA+ + D + + SNQYP+LLQLAMEG GI Sbjct: 190 LAPAALANETLLMLDDGQRQWMSWQTWLANQGLPDATLRNVLTSNQYPILLQLAMEGHGI 249 Query: 267 VLAWRHMIDACMEQGLLVRACEANASLGGGYYAVWPRDRIEHAAARAFRSWLVAES 322 VL WRHMIDAC+ +GLLVRA EA+ASLGGGYYAVWPRDR+E AAARAFRSWLV ++ Sbjct: 250 VLGWRHMIDACLREGLLVRASEASASLGGGYYAVWPRDRMEPAAARAFRSWLVRQA 305 >ref|YP_295114.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134] gb|AAZ60270.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134] Length = 299 Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 224/299 (74%), Positives = 254/299 (84%) Query: 27 MRISPLPPLPSLIAFEAAMRHGSFTRAAAELHLTQSAISRQIAQLERFLGKKLFLREPRA 86 MRISPLPPLP+L+AFEAAMRHGSFTRAAAELHLTQSAISRQ+AQLE FLG+KLF+REPRA Sbjct: 1 MRISPLPPLPNLVAFEAAMRHGSFTRAAAELHLTQSAISRQVAQLESFLGRKLFIREPRA 60 Query: 87 LRLTVSGQRYAALVQRLLVDCAEATEDIMKRKGHQELTVACSQGVAVLWLTPRLARFRAQ 146 LRLTVSGQRYA +VQRLLV CAEATED+MK + H LTVACS GVAVLWLTPRLA FRA Sbjct: 61 LRLTVSGQRYAEVVQRLLVGCAEATEDVMKVRSHTALTVACSTGVAVLWLTPRLASFRAA 120 Query: 147 HPDCHLRLVVNDSLAQLSETDFDMGIYFLRDGPPSGLAVRRLYDEEVFPVCSPAYLKGRT 206 HP+ LRL+VNDSLA LS +FD+G+Y+LR+GPP+G A RRLY EEVFPVC+PAYL GR Sbjct: 121 HPEIQLRLIVNDSLASLSAAEFDIGLYYLREGPPAGFAARRLYGEEVFPVCAPAYLGGRA 180 Query: 207 LAPADLPQETLLMLEDGQRQWMSWQNWLAHNEVDDVRIEQQILSNQYPVLLQLAMEGQGI 266 LAP+ L ETLLML+DGQRQWMSWQ W AH V D + SNQYP+LLQLA+EGQGI Sbjct: 181 LAPSALVNETLLMLDDGQRQWMSWQAWFAHQGVHDANPRAFLTSNQYPILLQLAIEGQGI 240 Query: 267 VLAWRHMIDACMEQGLLVRACEANASLGGGYYAVWPRDRIEHAAARAFRSWLVAESEAS 325 L WRHMID C+ GLLVRACEA+ASLGGGYY VWPRDR+E AAARAFR+W+V ++ + Sbjct: 241 ALGWRHMIDGCLRDGLLVRACEASASLGGGYYVVWPRDRMEPAAARAFRNWMVRQASTA 299 >ref|YP_004681703.1| LysR family transcriptional regulator [Cupriavidus necator N-1] gb|AEI80471.1| transcriptional regulator LysR family [Cupriavidus necator N-1] Length = 301 Score = 456 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 227/296 (76%), Positives = 254/296 (85%) Query: 27 MRISPLPPLPSLIAFEAAMRHGSFTRAAAELHLTQSAISRQIAQLERFLGKKLFLREPRA 86 MRISPLPPLP+L+AFEAAMRHGSFTRAAAELHLTQSAISRQ+AQLE FLG+KLF+REPRA Sbjct: 1 MRISPLPPLPNLVAFEAAMRHGSFTRAAAELHLTQSAISRQVAQLEHFLGRKLFIREPRA 60 Query: 87 LRLTVSGQRYAALVQRLLVDCAEATEDIMKRKGHQELTVACSQGVAVLWLTPRLARFRAQ 146 LRLTVSGQRYA +VQRLLV CAEATED+MK + H LTVACS GVAVLWLTPRL FR Sbjct: 61 LRLTVSGQRYAEVVQRLLVGCAEATEDVMKVRSHTALTVACSSGVAVLWLTPRLTSFREA 120 Query: 147 HPDCHLRLVVNDSLAQLSETDFDMGIYFLRDGPPSGLAVRRLYDEEVFPVCSPAYLKGRT 206 HP+ LRL VNDSLA LS +FD+G+Y+LR+GPP GLA RRLY EEVFPVC+P YL GRT Sbjct: 121 HPEIQLRLTVNDSLASLSPAEFDIGMYYLREGPPPGLAARRLYGEEVFPVCAPGYLNGRT 180 Query: 207 LAPADLPQETLLMLEDGQRQWMSWQNWLAHNEVDDVRIEQQILSNQYPVLLQLAMEGQGI 266 LAPA L ETLLML+DGQRQWMSWQ WLA + D + + SNQYP+LLQLAMEGQGI Sbjct: 181 LAPAALANETLLMLDDGQRQWMSWQTWLASQGLPDATLRNVLTSNQYPILLQLAMEGQGI 240 Query: 267 VLAWRHMIDACMEQGLLVRACEANASLGGGYYAVWPRDRIEHAAARAFRSWLVAES 322 VL WRHMIDAC+ +GLLVRA +A+ASLGGGYYAVWPRDR+E AAARAFRSWLV ++ Sbjct: 241 VLGWRHMIDACLREGLLVRASDASASLGGGYYAVWPRDRMEPAAARAFRSWLVRQA 296 >ref|YP_002233407.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] emb|CAR54644.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] Length = 315 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 186/300 (62%), Positives = 227/300 (75%), Gaps = 1/300 (0%) Query: 25 PTMRISPLPPLPSLIAFEAAMRHGSFTRAAAELHLTQSAISRQIAQLERFLGKKLFLREP 84 P MRI+PLPPL LIAFEAA+RH SFT+AAAELHLTQSAISRQI QLE FLG+ LF+RE Sbjct: 11 PAMRITPLPPLQCLIAFEAAVRHASFTKAAAELHLTQSAISRQIQQLEEFLGRSLFVREH 70 Query: 85 RALRLTVSGQRYAALVQRLLVDCAEATEDIMKRKGHQELTVACSQGVAVLWLTPRLARFR 144 R+LRLT++G++YAA V RLLV CAEAT D+MK G ELT+ACS GVA+LWLTPRL FR Sbjct: 71 RSLRLTIAGEQYAAQVHRLLVQCAEATHDVMKPYGDLELTIACSSGVALLWLTPRLPDFR 130 Query: 145 AQHPDCHLRLVVNDSLAQLSETDFDMGIYFLRDGPPSGLAVRRLYDEEVFPVCSPAYLKG 204 A +P+ LRL+V D LA +S +FD+G+Y++R P+ RRL+DEEVFPVC+P YL G Sbjct: 131 ATYPNIKLRLIVRDGLASMSPAEFDVGVYYVRQQAPAEYTARRLFDEEVFPVCAPGYLAG 190 Query: 205 RTLAPADLPQETLLMLEDGQRQWMSWQNWLAHNEVDDVRIE-QQILSNQYPVLLQLAMEG 263 RTL ADL ETLL LEDGQRQWMSW W N+VD + + Q I N YP ++Q+ + G Sbjct: 191 RTLDAADLANETLLRLEDGQRQWMSWSEWFDLNDVDRQKAQPQDITINSYPQIVQMTILG 250 Query: 264 QGIVLAWRHMIDACMEQGLLVRACEANASLGGGYYAVWPRDRIEHAAARAFRSWLVAESE 323 QG+ L WR+MIDAC+E GLLVR EA+AS GGGYY + P DR ++ AAR F WL ++E Sbjct: 251 QGVSLGWRYMIDACIEAGLLVRVTEASASHGGGYYVISPNDRAQNQAARLFTRWLFEQAE 310