BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3541.p (364 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773684.1| VGR-related protein [Herbaspirillum seropedi... 485 e-135 ref|YP_004753455.1| putative Vgr-like protein [Collimonas fungiv... 324 1e-86 ref|ZP_04941040.1| hypothetical protein BCPG_02527 [Burkholderia... 316 3e-84 ref|YP_369750.1| Rhs element Vgr protein [Burkholderia sp. 383] ... 305 1e-80 ref|YP_001816411.1| type VI secretion system Vgr family protein ... 301 1e-79 >ref|YP_003773684.1| VGR-related protein [Herbaspirillum seropedicae SmR1] gb|ADJ61776.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 966 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 248/332 (74%), Positives = 271/332 (81%) Query: 1 MTDQFQTIAAAFAGAVLSQQHRPLRLRWRAQETHFAQWLLVQRVDIEEACLEGMQAKLTC 60 MTD F TI AAFA A+LSQ RP+RLRW QE F Q LL+QRVDI+E LEGMQ +LTC Sbjct: 1 MTDHFATITAAFASAILSQNLRPIRLRWGPQEQRFEQSLLLQRVDIQETLLEGMQVQLTC 60 Query: 61 VSSDPELPLQALLGQPLGIEMVTDRGGLHHTNGIITEARAGQADGALRVYQLTLKDALSI 120 VS+DP+LPL LLGQPLG+EMVTDRG LHHTNG+IT+A AG ADGALRVYQLT++DALSI Sbjct: 61 VSTDPDLPLHTLLGQPLGVEMVTDRGRLHHTNGLITDACAGHADGALRVYQLTMRDALSI 120 Query: 121 MEERINTRVFRQLSVPRILEIMLGEWRQRSPALATAFHFDLDGLEDRRYPVREISHQFNE 180 ME R+NTR+FR+LSVP ILEI+L EWRQRS LA AF FDLDGL+D RYP REISHQFNE Sbjct: 121 MEGRVNTRIFRRLSVPSILEILLSEWRQRSSTLAAAFKFDLDGLDDTRYPAREISHQFNE 180 Query: 181 SDAHFIRRLCRREGIAWYVASPQPTAETGRTEDADVPMHALVFCDQSALLPRALAGTVRY 240 SDAHFIRRLCRREGIAWYVAS Q ET AD+P+H LVFCDQ ALLPRA AGTVRY Sbjct: 181 SDAHFIRRLCRREGIAWYVASGQQADETAIATHADIPIHTLVFCDQPALLPRAAAGTVRY 240 Query: 241 HRDGATEERDTISAWSRQRSLVPGRVWRGSWDYKAVRVEEAASHSAIDQGDTGRALAAIL 300 HRDGATEERD ISAWSRQRSLVPG VWR SWDYKAVR EEA+SHS +DQGD G LA IL Sbjct: 241 HRDGATEERDAISAWSRQRSLVPGSVWRRSWDYKAVRAEEASSHSIVDQGDAGYKLANIL 300 Query: 301 NDGLIEAPHAADGQQDHLRLGMASCVGPKASS 332 DGLIEAPHAAD Q DHLRL + +A S Sbjct: 301 RDGLIEAPHAADSQNDHLRLADTRMLAHEARS 332 >ref|YP_004753455.1| putative Vgr-like protein [Collimonas fungivorans Ter331] gb|AEK62632.1| putative Vgr-related protein [Collimonas fungivorans Ter331] Length = 933 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 164/333 (49%), Positives = 228/333 (68%), Gaps = 10/333 (3%) Query: 11 AFAGAVLSQQHRPLRLRWRAQETHFAQWLLVQRVDIEEACLEGMQAKLTCVSSDPELPLQ 70 AFA L+Q++RP+RL W +T Q L+VQR+DI E G++ LTC+S+ LPL Sbjct: 9 AFASGSLNQENRPIRLHWGNAQTTLEQVLVVQRIDITEGLCAGIEGHLTCLSTRSNLPLN 68 Query: 71 ALLGQPLGIEMVTDRGGLHHTNGIITEARAGQADGALRVYQLTLKDALSIMEERINTRVF 130 A +G P+ +++V DRG LH GIIT+ARAGQ+DG+L YQLT++DALS++E RINTR+F Sbjct: 69 AFIGLPVSVQLVNDRGALHQICGIITDARAGQSDGSLATYQLTIRDALSVLERRINTRMF 128 Query: 131 RQLSVPRILEIMLGEWRQRSPALATAFHFDLDGLEDRRYPVREISHQFNESDAHFIRRLC 190 R +V +++I+L EW+++SPALA AF FDL G + +YPVRE++ QF+ESDA FIRRLC Sbjct: 129 RTKNVVDVIDILLKEWQKKSPALARAFDFDLSGTDRSQYPVRELTVQFHESDADFIRRLC 188 Query: 191 RREGIAWYVAS---PQPTAETGRTEDADVPMHALVFCDQSALLPRALAGTVRYHRDGATE 247 RREGIAW+ A+ Q ++ + ++D+P+H LVF D LP++ AGT+RYHRD ATE Sbjct: 189 RREGIAWFTAAGQREQDSSASNNANNSDLPIHTLVFFDDPMKLPQSGAGTIRYHRDAATE 248 Query: 248 ERDTISAWSRQRSLVPGRVWRGSWDYKAVRVEEAASHSAIDQGDTGRALAAILNDGLIEA 307 ERD+++ WS + LV G V R S DYK+ ++ +A+ S IDQG G LA +L+D +I+ Sbjct: 249 ERDSVTLWSAMQQLVSGSVQRASADYKSGKMAQASQTSIIDQGQAGNDLAQLLSDSVIDV 308 Query: 308 PHAADGQQDHLRLGMASCVGPKASSLRHKHRTG 340 PHA D D+ RL KA L H+ R Sbjct: 309 PHAGDSWADYDRL-------TKARMLSHELRAA 334 >ref|ZP_04941040.1| hypothetical protein BCPG_02527 [Burkholderia cenocepacia PC184] gb|EAY64211.1| hypothetical protein BCPG_02527 [Burkholderia cenocepacia PC184] Length = 925 Score = 316 bits (810), Expect = 3e-84, Method: Composition-based stats. Identities = 151/311 (48%), Positives = 206/311 (66%), Gaps = 1/311 (0%) Query: 11 AFAGAVLSQQHRPLRLRWRAQETHFAQWLLVQRVDIEEACLEGMQAKLTCVSSDPELPLQ 70 AFA V+ Q +RP+R+ W + Q L +Q DI E + G++ LTCVS+ +LP++ Sbjct: 9 AFASGVVDQNNRPVRMNWGPAQKTLEQVLALQYADIREGLMTGIEGHLTCVSARADLPIR 68 Query: 71 ALLGQPLGIEMVTDRGGLHHTNGIITEARAGQADGALRVYQLTLKDALSIMEERINTRVF 130 + +G P+ +EM TDRG LH NGI+T+ R GQ+DG+L YQLT++D LS+ME R N+R++ Sbjct: 69 SFIGLPVSVEMTTDRGRLHTINGIVTDVRTGQSDGSLTCYQLTIRDVLSVMERRTNSRLY 128 Query: 131 RQLSVPRILEIMLGEWRQRSPALATAFHFDLDGLEDRRYPVREISHQFNESDAHFIRRLC 190 R S+P IL ++L EWRQRS ALA AF FDL GL+ RYP RE++ Q NESDAHFIRRL Sbjct: 129 RSKSLPDILGVLLQEWRQRSSALAGAFEFDLSGLQTERYPARELTRQVNESDAHFIRRLL 188 Query: 191 RREGIAWYVASPQPTAETGRTEDADVPMHALVFCDQSALLPRALAGTVRYHRDGATEERD 250 RREG +V + + E D P+H LVF D S LP AGT+RYHRD +TEERD Sbjct: 189 RREGATVFVKAGK-AGERASGNANDTPVHTLVFADDSMKLPETAAGTIRYHRDASTEERD 247 Query: 251 TISAWSRQRSLVPGRVWRGSWDYKAVRVEEAASHSAIDQGDTGRALAAILNDGLIEAPHA 310 +I+ W+ R L+PG++ R +WDYK+ R+ + + +DQGD G L +L D +I+ PHA Sbjct: 248 SITLWATSRRLIPGKIVRPTWDYKSGRMSQTEQATIVDQGDGGNDLGHLLADVVIDIPHA 307 Query: 311 ADGQQDHLRLG 321 D D R+G Sbjct: 308 GDSSSDLDRIG 318 >ref|YP_369750.1| Rhs element Vgr protein [Burkholderia sp. 383] gb|ABB09106.1| Rhs element Vgr protein [Burkholderia sp. 383] Length = 902 Score = 305 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 146/296 (49%), Positives = 197/296 (66%), Gaps = 1/296 (0%) Query: 26 LRWRAQETHFAQWLLVQRVDIEEACLEGMQAKLTCVSSDPELPLQALLGQPLGIEMVTDR 85 + W + Q L +Q DI E + G++ LTCVS+ +LP+++ +G P+ +EM TDR Sbjct: 1 MNWGPAQKTLEQVLALQYADIREGLMTGIEGHLTCVSARADLPIRSFIGLPVSVEMTTDR 60 Query: 86 GGLHHTNGIITEARAGQADGALRVYQLTLKDALSIMEERINTRVFRQLSVPRILEIMLGE 145 G LH NGI+T+ R GQ+DG+L YQLT++D LS+ME RIN+R+FR ++P IL ++L E Sbjct: 61 GRLHTINGIVTDVRTGQSDGSLTCYQLTVRDVLSVMERRINSRLFRTKNLPDILGVLLQE 120 Query: 146 WRQRSPALATAFHFDLDGLEDRRYPVREISHQFNESDAHFIRRLCRREGIAWYVASPQPT 205 WRQRS ALA AF FDL GL+ RYP RE++ Q NESDAHFIRRL RR+G +V + + Sbjct: 121 WRQRSSALAGAFEFDLSGLQGERYPARELTRQVNESDAHFIRRLLRRDGATVFVKAGK-A 179 Query: 206 AETGRTEDADVPMHALVFCDQSALLPRALAGTVRYHRDGATEERDTISAWSRQRSLVPGR 265 E D P+H LVF D S LP LAGTVRYHRD ATEERD+I+ W+ RSL+PG+ Sbjct: 180 GERANGNANDTPVHTLVFADDSMKLPETLAGTVRYHRDAATEERDSITLWATSRSLIPGK 239 Query: 266 VWRGSWDYKAVRVEEAASHSAIDQGDTGRALAAILNDGLIEAPHAADGQQDHLRLG 321 + R +WDYK R+ + + +DQGD G L +L D +I+ PHA + D R+G Sbjct: 240 IVRPTWDYKTGRMSQTEQATIVDQGDGGNDLGHLLADSVIDIPHAGNSSSDLDRIG 295 >ref|YP_001816411.1| type VI secretion system Vgr family protein [Burkholderia ambifaria MC40-6] gb|ACB68858.1| type VI secretion system Vgr family protein [Burkholderia ambifaria MC40-6] Length = 955 Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 165/348 (47%), Positives = 216/348 (62%), Gaps = 22/348 (6%) Query: 11 AFAGAVLSQQHRPLRLRWRAQETHFAQWLLVQRVDIEEACLEGMQAKLTCVSSDPELPLQ 70 AFA A L Q +R +R W + A L+ Q +D+ E G++ LTC+SS P+LPL Sbjct: 4 AFASA-LDQNNRAIRFHWGRHQDALAHVLVPQNIDLTEGLCAGIEGHLTCLSSRPDLPLA 62 Query: 71 ALLGQPLGIEMVTDRGGLHHTNGIITEARAGQADGALRVYQLTLKDALSIMEERINTRVF 130 LG PL ++++TDRG + NGIIT+ RAGQ+DG+L QLTL+DALSI+E+R+N+R F Sbjct: 63 TFLGLPLSVQLITDRGKPYPINGIITDVRAGQSDGSLTCVQLTLRDALSILEQRVNSRTF 122 Query: 131 RQLSVPRILEIMLGEWRQRSPALATAFHFDLDGLEDRRYPVREISHQFNESDAHFIRRLC 190 R +SVP ILE +L EW+QRS ALA AF F+L L+ ++YP RE + Q +ESDA FIRRLC Sbjct: 123 RSMSVPDILETLLQEWQQRSSALAQAFDFELI-LDRKQYPKREQARQADESDAAFIRRLC 181 Query: 191 RREGIAWYVASPQPTAETGRTEDA--DVPMHALVFCDQSALLPRALAGTVRYHRDGATEE 248 RR+GI WY A TGR + A D P+H +VFCD LP+ALAG+V YHR + E Sbjct: 182 RRDGIFWY-------ARTGRHDGAATDTPVHTIVFCDDPTKLPQALAGSVSYHRGAQSRE 234 Query: 249 RDTISAWSRQRSLVPGRVWRGSWDYKAVRVEEAASHSAIDQGDTGRALAAILNDGLIEAP 308 RD+++ WS R L PG V R SWDYK R+ ++ + IDQG+ G LA +L D +I+ P Sbjct: 235 RDSVTLWSTARVLTPGSVRRASWDYKTGRMLQSEQETIIDQGEAGNDLAKLLADSVIDVP 294 Query: 309 HAADGQQDHLRLGMASCVGPKASSLRHKHRTGGAAACWSARP----CW 352 H D D RL KA L H+HR A R CW Sbjct: 295 HVGDSDADQERLA-------KARILAHEHRAECVYASSDVRDVSPGCW 335