BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3539.p         (153 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773686.1| hypothetical protein Hsero_0252 [Herbaspiril...   253   8e-66
emb|CAL61040.2| conserved hypothetical protein [Herminiimonas ar...   147   6e-34
ref|YP_001353984.1| hypothetical protein mma_2294 [Janthinobacte...   143   8e-33
ref|YP_001630549.1| hypothetical protein Bpet1941 [Bordetella pe...   139   1e-31
ref|ZP_07046970.1| hypothetical protein CTS44_22399 [Comamonas t...   139   2e-31

>ref|YP_003773686.1| hypothetical protein Hsero_0252 [Herbaspirillum seropedicae SmR1]
 gb|ADJ61778.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 154

 Score =  253 bits (645), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 133/149 (89%), Positives = 142/149 (95%)

Query: 1   MSQVVSSESMQSVPVARPLRKECPPGACDCQREALLECLHAPEARVLWLTREEEKRLIER 60
           MSQVVSS+SMQ +P ARP+RKECPPGACDCQREALLECLHAPEAR+L LTREEEKRLIER
Sbjct: 1   MSQVVSSDSMQPMPAARPIRKECPPGACDCQREALLECLHAPEARILMLTREEEKRLIER 60

Query: 61  ITRISTYDELLHVGSLMRKNLGIHLHISPGANEVRTVRGLQIHLAEQPGLCRKTRDTIPA 120
           I RI++Y+ELLHVG+LMRKNLGIHLHISPG NEVRTVRGLQIHLAEQPGLCRKTRDTIPA
Sbjct: 61  IFRIASYEELLHVGALMRKNLGIHLHISPGPNEVRTVRGLQIHLAEQPGLCRKTRDTIPA 120

Query: 121 AIRKCLENNPTIVYALLDAHDLLGAASPP 149
           AIRKCLENNPTIVYALLDAHDLLGA + P
Sbjct: 121 AIRKCLENNPTIVYALLDAHDLLGATTSP 149


>emb|CAL61040.2| conserved hypothetical protein [Herminiimonas arsenicoxydans]
          Length = 135

 Score =  147 bits (370), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 79/127 (62%), Positives = 95/127 (74%), Gaps = 1/127 (0%)

Query: 18  PLRKECPPGACDCQREALLECLHAPEARVLWLTREEEKRLIERITRISTYDELLHVGSLM 77
           P+R ECPPG C C+RE+LL    A + R+L LTR EEK+LI RI  IS+Y +L H+   M
Sbjct: 8   PIRTECPPGTCVCERESLLND-PAGDMRILLLTRMEEKKLIARIESISSYADLQHMAERM 66

Query: 78  RKNLGIHLHISPGANEVRTVRGLQIHLAEQPGLCRKTRDTIPAAIRKCLENNPTIVYALL 137
           +  LGI + I+PGA EVRTVRGL I L E+PGLC+K R TIPAAIRKCL+ NP IVYA+L
Sbjct: 67  QAQLGIVVRIAPGAREVRTVRGLTIELLERPGLCKKIRQTIPAAIRKCLDRNPEIVYAIL 126

Query: 138 DAHDLLG 144
           DAHDL G
Sbjct: 127 DAHDLFG 133


>ref|YP_001353984.1| hypothetical protein mma_2294 [Janthinobacterium sp. Marseille]
 gb|ABR89336.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 136

 Score =  143 bits (361), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 79/126 (62%), Positives = 90/126 (71%), Gaps = 1/126 (0%)

Query: 19  LRKECPPGACDCQREALLECLHAPEARVLWLTREEEKRLIERITRISTYDELLHVGSLMR 78
           LR+ECP G C C+R+ LL      + R+L LT+ +EK+LIERI  IS+Y +L HV   M 
Sbjct: 8   LREECPQGLCTCERDELLRKPDG-DVRILQLTKWQEKQLIERIEAISSYTDLKHVEERMY 66

Query: 79  KNLGIHLHISPGANEVRTVRGLQIHLAEQPGLCRKTRDTIPAAIRKCLENNPTIVYALLD 138
             LGI LHISPG NEVRTVRGL I L EQ GLCRKTR TIPAAIRKCLE NP I YA+LD
Sbjct: 67  AQLGIVLHISPGLNEVRTVRGLNIVLQEQQGLCRKTRQTIPAAIRKCLERNPAITYAILD 126

Query: 139 AHDLLG 144
           A  L G
Sbjct: 127 AEGLFG 132


>ref|YP_001630549.1| hypothetical protein Bpet1941 [Bordetella petrii DSM 12804]
 emb|CAP42280.1| conserved hypothetical protein [Bordetella petrii]
          Length = 132

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 74/131 (56%), Positives = 94/131 (71%), Gaps = 1/131 (0%)

Query: 15  VARPLRKECPPGACDCQREALLECLHAPEARVLWLTREEEKRLIERITRISTYDELLHVG 74
           V  P+R+ECPPGAC C R+ LL      + R+L LTREEEK+L+ R+  +S+ D+L  + 
Sbjct: 3   VPFPIRQECPPGACICDRDRLL-ATPGGDIRILRLTREEEKKLVARLENLSSLDDLRRMQ 61

Query: 75  SLMRKNLGIHLHISPGANEVRTVRGLQIHLAEQPGLCRKTRDTIPAAIRKCLENNPTIVY 134
            LM   LGI L I+PG NEVRTVRGL I +A+ PGLC KTR T+PAAIR+ LE  P I+Y
Sbjct: 62  QLMHAQLGISLRIAPGPNEVRTVRGLHIEIADLPGLCNKTRQTLPAAIRRGLERKPEIIY 121

Query: 135 ALLDAHDLLGA 145
           ALLD++DLLG 
Sbjct: 122 ALLDSYDLLGG 132


>ref|ZP_07046970.1| hypothetical protein CTS44_22399 [Comamonas testosteroni S44]
 gb|EFI59301.1| hypothetical protein CTS44_22399 [Comamonas testosteroni S44]
          Length = 148

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 75/131 (57%), Positives = 96/131 (73%), Gaps = 1/131 (0%)

Query: 14  PVARPLRKECPPGACDCQREALLECLHAPEARVLWLTREEEKRLIERITRISTYDELLHV 73
           P + P+R ECPPGACDC+RE LL    A + R+L LTREEEK+L++R+  IS+  +L H+
Sbjct: 15  PPSLPIRVECPPGACDCRREQLLGTPDA-DLRILRLTREEEKKLLQRLESISSLVDLEHM 73

Query: 74  GSLMRKNLGIHLHISPGANEVRTVRGLQIHLAEQPGLCRKTRDTIPAAIRKCLENNPTIV 133
              +   LG+ + I+PG NEVRT+RG+QI L + PGLCRKTR +IPAAIRK LE  P I 
Sbjct: 74  QQRIHALLGLEIRITPGNNEVRTMRGIQIDLGDMPGLCRKTRQSIPAAIRKGLERRPEIA 133

Query: 134 YALLDAHDLLG 144
           +ALLDAHDL G
Sbjct: 134 WALLDAHDLFG 144