BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3538.p (271 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773687.1| transcription regulator protein [Herbaspiril... 424 e-116 ref|YP_004751191.1| TetR family regulatory protein [Collimonas f... 327 1e-87 ref|ZP_08274336.1| putative transcriptional regulator for fatty ... 306 3e-81 ref|YP_724977.1| TetR/AcrR family transcriptional regulator [Ral... 259 2e-67 ref|YP_001795792.1| TetR family transcriptional regulator [Cupri... 259 3e-67 >ref|YP_003773687.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ61779.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 233 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 216/233 (92%), Positives = 226/233 (96%) Query: 39 MTETSKVTTAPARPKFLRKGEQTRAAILDVALELASRDGLEGLTIGLLAEKMKMSKSGVF 98 MTETSKVTTAPARPKFLRKGEQTRAAILDVALELASRDGLEGLTIGLLAEKMKMSKSGVF Sbjct: 1 MTETSKVTTAPARPKFLRKGEQTRAAILDVALELASRDGLEGLTIGLLAEKMKMSKSGVF 60 Query: 99 AHFGSREDLQIEVVRLYHNRFEQDVFYPSIKEPRGLPRLEGMFARWIKQVTVEIALGCIY 158 AHFGSREDLQIEVVRLYHNRFE DVFYPSIKEPRGLPRLE MFARW+KQVTVEIALGCIY Sbjct: 61 AHFGSREDLQIEVVRLYHNRFEADVFYPSIKEPRGLPRLEAMFARWVKQVTVEIALGCIY 120 Query: 159 ISGAVEYDDRPGAIRDHLVAMVQAWRDALERCIKQAMEAGHLRTDIEVSQMVYEMYGLIL 218 ISGAVEYDDRPGAIRDHLVAMVQAWRDALERCI+QA++AGHLR +++VSQMVYEMYGLIL Sbjct: 121 ISGAVEYDDRPGAIRDHLVAMVQAWRDALERCIQQAIDAGHLRPEVDVSQMVYEMYGLIL 180 Query: 219 ALHHDARFLHIPGSVERAEASFRRLIDSYRPQGSDSASTSAPKNSKSAARKAA 271 ALHHDARFLHIPGSVERAEASFRRLI SYRPQGSDS S++ K+SKSAARKAA Sbjct: 181 ALHHDARFLHIPGSVERAEASFRRLIGSYRPQGSDSLSSTPAKHSKSAARKAA 233 >ref|YP_004751191.1| TetR family regulatory protein [Collimonas fungivorans Ter331] gb|AEK60368.1| TetR family regulatory protein [Collimonas fungivorans Ter331] Length = 233 Score = 327 bits (838), Expect = 1e-87, Method: Composition-based stats. Identities = 167/222 (75%), Positives = 184/222 (82%), Gaps = 2/222 (0%) Query: 52 PKFLRKGEQTRAAILDVALELASRDGLEGLTIGLLAEKMKMSKSGVFAHFGSREDLQIEV 111 PKF+RKGE TRAAILDVA+ LASRDGLEGLTIGLLAEKM MSKSGVFAHFGSREDLQIEV Sbjct: 8 PKFMRKGEMTRAAILDVAITLASRDGLEGLTIGLLAEKMNMSKSGVFAHFGSREDLQIEV 67 Query: 112 VRLYHNRFEQDVFYPSIKEPRGLPRLEGMFARWIKQVTVEIALGCIYISGAVEYDDRPGA 171 V+LYH +FEQ+VFYPSIKE RGLPRLE MFARWI+QVT+EIA GCIYISGAVEYDDRPG Sbjct: 68 VKLYHRQFEQEVFYPSIKEARGLPRLECMFARWIRQVTIEIASGCIYISGAVEYDDRPGE 127 Query: 172 IRDHLVAMVQAWRDALERCIKQAMEAGHLRTDIEVSQMVYEMYGLILALHHDARFLHIPG 231 IR+ LV MVQ W+ AL RC QA+EAGHLR D + Q+VYEMYGLIL LHHDARFL G Sbjct: 128 IREQLVTMVQTWQQALHRCALQAIEAGHLRGDTDADQLVYEMYGLILGLHHDARFLKKAG 187 Query: 232 SVERAEASFRRLIDSYRPQGSDSAST--SAPKNSKSAARKAA 271 SVERA+ F RLIDSYR D+ +T S+ N K AA+ AA Sbjct: 188 SVERAQKGFDRLIDSYRDTQVDTQATKKSSQTNQKIAAKPAA 229 >ref|ZP_08274336.1| putative transcriptional regulator for fatty acid degradation FadP, TetR family [Oxalobacteraceae bacterium IMCC9480] gb|EGF32197.1| putative transcriptional regulator for fatty acid degradation FadP, TetR family [Oxalobacteraceae bacterium IMCC9480] Length = 212 Score = 306 bits (783), Expect = 3e-81, Method: Composition-based stats. Identities = 149/194 (76%), Positives = 171/194 (88%) Query: 55 LRKGEQTRAAILDVALELASRDGLEGLTIGLLAEKMKMSKSGVFAHFGSREDLQIEVVRL 114 +RKGE TRAAILDVAL+L+SRDGLEGLTIGLLA+KM MSKSGVFAHFGSREDLQIEV++L Sbjct: 1 MRKGELTRAAILDVALDLSSRDGLEGLTIGLLADKMNMSKSGVFAHFGSREDLQIEVLKL 60 Query: 115 YHNRFEQDVFYPSIKEPRGLPRLEGMFARWIKQVTVEIALGCIYISGAVEYDDRPGAIRD 174 YH+ FEQ+VFYPS+KE RGLPRL+GMFARW+K+VTVEIA GCIYISGAVEYDDRPGAIR+ Sbjct: 61 YHHHFEQEVFYPSVKEARGLPRLKGMFARWVKRVTVEIASGCIYISGAVEYDDRPGAIRE 120 Query: 175 HLVAMVQAWRDALERCIKQAMEAGHLRTDIEVSQMVYEMYGLILALHHDARFLHIPGSVE 234 L AMV AW+ AL RC++QA GHLR D + QMV+EMYGLILALHHDARF+ PGSVE Sbjct: 121 ELEAMVLAWQTALFRCVEQATAMGHLRADTDPQQMVFEMYGLILALHHDARFIKRPGSVE 180 Query: 235 RAEASFRRLIDSYR 248 RA+ F RL+ SY+ Sbjct: 181 RAQLGFERLMQSYQ 194 >ref|YP_724977.1| TetR/AcrR family transcriptional regulator [Ralstonia eutropha H16] ref|YP_004684327.1| TetR family transcriptional regulator [Cupriavidus necator N-1] emb|CAJ91609.1| transcriptional regulator, TetR/AcrR-family [Ralstonia eutropha H16] gb|AEI75846.1| transcriptional regulator TetR/AcrR family [Cupriavidus necator N-1] Length = 213 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 134/209 (64%), Positives = 160/209 (76%), Gaps = 1/209 (0%) Query: 41 ETSKVTTAPARPKFLRKGEQTRAAILDVALELASRDGLEGLTIGLLAEKMKMSKSGVFAH 100 +++++ +A A P +RKGE TR AILD ALEL+SRDGLEGLTIGLLAE+M+MSKSGVFAH Sbjct: 4 QSARLESAAASPAPMRKGEMTRVAILDAALELSSRDGLEGLTIGLLAERMQMSKSGVFAH 63 Query: 101 FGSREDLQIEVVRLYHNRFEQDVFYPSIKEPRGLPRLEGMFARWIKQVTVEIALGCIYIS 160 FGSREDLQ+EVVR YH RFEQ+VFYPS++EPRGLPRL M RW+++ E+ GCIYIS Sbjct: 64 FGSREDLQVEVVREYHRRFEQEVFYPSLQEPRGLPRLWSMVRRWMEKRIQEVTTGCIYIS 123 Query: 161 GAVEYDDRPGA-IRDHLVAMVQAWRDALERCIKQAMEAGHLRTDIEVSQMVYEMYGLILA 219 GAVEYDDR G+ +RD LV V WR AL R I QA E GHLR D + M++EMY L L Sbjct: 124 GAVEYDDRAGSLVRDELVKSVTIWRAALTRAINQAREEGHLRADCDPRLMLFEMYSLELG 183 Query: 220 LHHDARFLHIPGSVERAEASFRRLIDSYR 248 LHHDARFL +P S E A + +LI SYR Sbjct: 184 LHHDARFLRLPDSAELAMVALNKLIQSYR 212 >ref|YP_001795792.1| TetR family transcriptional regulator [Cupriavidus taiwanensis LMG 19424] emb|CAP63070.1| putative transcriptional regulator, tetR family [Cupriavidus taiwanensis LMG 19424] Length = 213 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 133/209 (63%), Positives = 160/209 (76%), Gaps = 1/209 (0%) Query: 41 ETSKVTTAPARPKFLRKGEQTRAAILDVALELASRDGLEGLTIGLLAEKMKMSKSGVFAH 100 +++++ +A + P +RKGE TR AILD ALEL+SRDGLEGLTIGLLAE+M+MSKSGVFAH Sbjct: 4 QSARLESAASSPSPMRKGEMTRVAILDAALELSSRDGLEGLTIGLLAERMQMSKSGVFAH 63 Query: 101 FGSREDLQIEVVRLYHNRFEQDVFYPSIKEPRGLPRLEGMFARWIKQVTVEIALGCIYIS 160 FGSREDLQ+EVVR YH RFEQ+VFYPS++EPRGLPRL M RW+++ E+ GCIYIS Sbjct: 64 FGSREDLQVEVVREYHRRFEQEVFYPSLQEPRGLPRLWSMVRRWMEKRIQEVTTGCIYIS 123 Query: 161 GAVEYDDRPGA-IRDHLVAMVQAWRDALERCIKQAMEAGHLRTDIEVSQMVYEMYGLILA 219 GAVEYDDR G+ +RD LV V WR AL R I QA E GHLR D + M++EMY L L Sbjct: 124 GAVEYDDRAGSLVRDELVKSVTIWRAALTRAINQAKEEGHLRADCDPRLMLFEMYSLELG 183 Query: 220 LHHDARFLHIPGSVERAEASFRRLIDSYR 248 LHHDARFL +P S E A + +LI SYR Sbjct: 184 LHHDARFLRLPDSAELAMVALNKLIQSYR 212