BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3532.p (191 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AEG68831.1| exonuclease [Ralstonia solanacearum Po82] 211 4e-53 ref|YP_584988.1| 3'-5' Exonuclease [Cupriavidus metallidurans CH... 198 3e-49 ref|ZP_07109312.1| Exonuclease RNase T and DNA polymerase III [O... 185 3e-45 ref|YP_003885460.1| exonuclease RNase T and DNA polymerase III [... 172 3e-41 ref|YP_320186.1| exonuclease [Anabaena variabilis ATCC 29413] >g... 171 5e-41 >gb|AEG68831.1| exonuclease [Ralstonia solanacearum Po82] Length = 191 Score = 211 bits (538), Expect = 4e-53, Method: Composition-based stats. Identities = 106/184 (57%), Positives = 131/184 (71%), Gaps = 7/184 (3%) Query: 1 MTQILIVDLEATCSDDGRIPSEDMEAIEIGACWIDLENGRVIDRFQSFVRPVLNPVLTDF 60 M IL+VDLEATC D+ P+ DME IE+GA W+ +G V+DRFQ+F RP++NP LT F Sbjct: 1 MPNILVVDLEATCDDNA--PTFDMETIEVGAVWV-APDGAVLDRFQAFSRPLINPRLTPF 57 Query: 61 CIGLTGIQQSYLTTAPSYREAASLLTEFVHAHAESDSWWASWGNYDRKQFERDSYRHGVP 120 C LT I Q+ + +AP++ A L FV + + + WASWG +D KQ +RDS RHG+ Sbjct: 58 CSTLTNIHQTDVDSAPTFPAVAEALRAFVARYRQPGATWASWGAWDHKQLDRDSARHGIT 117 Query: 121 EPIAIPHQNAKRLFAKAQRIGKEVGMVKACELAGLILEGDHHRALDKHRAIALNIARLLP 180 PI +PH NAKRLFAKA+RIGKEVGM KACEL L LEG HHRALD ALN+ARLLP Sbjct: 118 PPIDLPHINAKRLFAKARRIGKEVGMAKACELVSLQLEGAHHRALDD----ALNVARLLP 173 Query: 181 WILG 184 W+LG Sbjct: 174 WVLG 177 >ref|YP_584988.1| 3'-5' Exonuclease [Cupriavidus metallidurans CH34] gb|ABF09719.1| 3'-5' Exonuclease [Cupriavidus metallidurans CH34] Length = 194 Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats. Identities = 103/187 (55%), Positives = 129/187 (68%), Gaps = 6/187 (3%) Query: 4 ILIVDLEATCSDDGRIPSEDMEAIEIGACWIDLENGRVIDRFQSFVRPVLNPVLTDFCIG 63 +L+VDLEATCS+D +ME EIGA W+ NG V+D FQSFVRPV+NP LT F Sbjct: 5 VLVVDLEATCSED-MAAGWEMETAEIGAVWVR-GNGTVLDHFQSFVRPVVNPQLTAFFTN 62 Query: 64 LTGIQQSYLTTAPSYREAASLLTEFVHAHAESDSWWASWGNYDRKQFERDSYRHGVPEPI 123 LTGI QS + AP + AA L +FV + S W SWG +D +Q RDS R+ + EPI Sbjct: 63 LTGISQSDVDDAPLFTVAAEQLRQFVERYQMPGSIWVSWGAWDARQLLRDSARYRIAEPI 122 Query: 124 AIPHQNAKRLFAKAQRIGKEVGMVKACELAGLILEGDHHRALDKHRAIALNIARLLPWIL 183 A+PHQN KRLFAKAQ+IGKEVGM KAC+LAG + G HHRALD A++I LLP++ Sbjct: 123 ALPHQNGKRLFAKAQKIGKEVGMAKACQLAGQTIAGTHHRALDD----AMSIVGLLPFVF 178 Query: 184 GKRLLRS 190 G++LLR+ Sbjct: 179 GEKLLRA 185 >ref|ZP_07109312.1| Exonuclease RNase T and DNA polymerase III [Oscillatoria sp. PCC 6506] emb|CBN54460.1| Exonuclease RNase T and DNA polymerase III [Oscillatoria sp. PCC 6506] Length = 192 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 91/184 (49%), Positives = 125/184 (67%), Gaps = 6/184 (3%) Query: 5 LIVDLEATCSDDGRIPSEDMEAIEIGACWIDLENGRVIDRFQSFVRPVLNPVLTDFCIGL 64 L++DLEATC D I E ME IEIGA ++ +N ++D FQ+F++PV +P+LT+FC L Sbjct: 14 LVLDLEATCCDRETINREHMEIIEIGAVMVEPKNLTIVDEFQTFIKPVRHPILTEFCKSL 73 Query: 65 TGIQQSYLTTAPSYREAASLLTEFVHAHAESDSWWASWGNYDRKQFERDSYRHGVPEPIA 124 T I Q + AP+Y EA +LL ++ + S++ + SWG+YDRKQF++DS H VP PIA Sbjct: 74 TSISQKQVDLAPTYPEAIALLKNWLSGY--SNAVFGSWGDYDRKQFQQDSNFHKVPFPIA 131 Query: 125 IPHQNAKRLFAKAQRIGKEVGMVKACELAGLILEGDHHRALDKHRAIALNIARLLPWILG 184 PH N K+LF + Q + K GM KA +L GL LEG HHR +D R NIA+LLP+ILG Sbjct: 132 YPHVNLKQLFTEQQGLRKRPGMAKALQLVGLPLEGTHHRGIDDAR----NIAKLLPYILG 187 Query: 185 KRLL 188 ++ L Sbjct: 188 EKQL 191 >ref|YP_003885460.1| exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC 7822] gb|ADN12185.1| Exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC 7822] Length = 199 Score = 172 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 89/192 (46%), Positives = 125/192 (65%), Gaps = 14/192 (7%) Query: 5 LIVDLEATC--------SDDGRIPSEDMEAIEIGACWIDLENGRVIDRFQSFVRPVLNPV 56 L++DLEATC + G I +ME IEIGA ++ ++ ++ FQ+F++PV P+ Sbjct: 11 LVLDLEATCCELLRSTEGERGTIKRHEMEIIEIGAVMVEKQDLTIVAEFQTFIKPVRYPI 70 Query: 57 LTDFCIGLTGIQQSYLTTAPSYREAASLLTEFVHAHAESDSWWASWGNYDRKQFERDSYR 116 LT+FC LT I Q+ + APSY EAA LL +++ + S++ + SWG+YDR QF +DS Sbjct: 71 LTNFCKSLTSITQTQVDQAPSYPEAAILLKKWLSNY--SNAVFGSWGDYDRHQFLQDSKF 128 Query: 117 HGVPEPIAIPHQNAKRLFAKAQRIGKEVGMVKACELAGLILEGDHHRALDKHRAIALNIA 176 H VP PIA PH N K+LF++ Q + K GM +A ELAGL L G HHR +D R NIA Sbjct: 129 HQVPFPIAYPHVNLKQLFSERQGLPKRYGMKEALELAGLTLSGTHHRGIDDAR----NIA 184 Query: 177 RLLPWILGKRLL 188 +LLP+ILG++ L Sbjct: 185 KLLPYILGRKQL 196 >ref|YP_320186.1| exonuclease [Anabaena variabilis ATCC 29413] gb|ABA24997.1| Exonuclease [Anabaena variabilis ATCC 29413] Length = 192 Score = 171 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 79/184 (42%), Positives = 125/184 (67%), Gaps = 6/184 (3%) Query: 5 LIVDLEATCSDDGRIPSEDMEAIEIGACWIDLENGRVIDRFQSFVRPVLNPVLTDFCIGL 64 L++DLEATC D G I +ME IEIGA ++ + +++D FQ+F++P+ +P+LT+FC L Sbjct: 11 LVLDLEATCCDKGTIKRHEMEIIEIGAVMVEAQTLKILDEFQTFIKPIRHPILTEFCKLL 70 Query: 65 TGIQQSYLTTAPSYREAASLLTEFVHAHAESDSWWASWGNYDRKQFERDSYRHGVPEPIA 124 T I Q+ + AP Y EA ++L +++ + ++ + SWG+YDR QF++DS H + PIA Sbjct: 71 TSITQTQVDHAPEYPEAIAMLKQWLSKY--PNAVFGSWGDYDRNQFKQDSKFHNILFPIA 128 Query: 125 IPHQNAKRLFAKAQRIGKEVGMVKACELAGLILEGDHHRALDKHRAIALNIARLLPWILG 184 PH N K++F+++Q + K GM +A +L + LEG HHR +D A NIA+LLPWIL Sbjct: 129 YPHINLKQMFSESQDLPKRYGMAEALQLVNIELEGIHHRGIDD----AKNIAKLLPWILN 184 Query: 185 KRLL 188 ++++ Sbjct: 185 EKIV 188