BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3529.p         (146 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776416.1| methyltransferase of chemotaxis proteins pro...   114   5e-24
ref|YP_004753019.1| putative protein methyltransferase [Collimon...   101   4e-20
ref|YP_346786.1| MCP methyltransferase, CheR-type [Pseudomonas f...    99   2e-19
ref|YP_001351706.1| CheR chemotaxis protein methyltransferase [J...    91   5e-17
ref|ZP_07773858.1| chemotaxis protein methyltransferase CheR [Ps...    80   1e-13

>ref|YP_003776416.1| methyltransferase of chemotaxis proteins protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ64508.1| methyltransferase of chemotaxis proteins protein [Herbaspirillum
           seropedicae SmR1]
          Length = 433

 Score =  114 bits (285), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 80/120 (66%), Positives = 91/120 (75%)

Query: 27  AFAAPVPAPLSASSQPLLQRARLLADAGQFAQAAALCEQAIDELGPSAEAFYLQGLIHDA 86
           A AA   +P +A    LL+RAR LAD G+FAQA  LCEQA+ + GPSAEAFYLQGLIHDA
Sbjct: 314 ATAARPASPATALPAGLLERARALADQGRFAQAGELCEQAVQQQGPSAEAFYLQGLIHDA 373

Query: 87  GGDAGQAQRCYRKVLYLAPQHQAALLQLAALLQAQGDTAGAERLRQRASRVTTTEEPHHG 146
           GG    AQRCYRK LYL P+HQAALLQLAALLQAQGD +GA+R+RQRA R+    E  HG
Sbjct: 374 GGQQELAQRCYRKALYLEPEHQAALLQLAALLQAQGDASGAQRMRQRAERMAKPGEGAHG 433


>ref|YP_004753019.1| putative protein methyltransferase [Collimonas fungivorans Ter331]
 gb|AEK62196.1| putative protein methyltransferase [Collimonas fungivorans Ter331]
          Length = 415

 Score =  101 bits (251), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 58/103 (56%), Positives = 66/103 (64%)

Query: 34  APLSASSQPLLQRARLLADAGQFAQAAALCEQAIDELGPSAEAFYLQGLIHDAGGDAGQA 93
           A L    Q  L   +LLAD GQ ++AA+LCEQ I   GPSA A+YL G+IHDA      A
Sbjct: 306 AELPVLPQTTLATVQLLADQGQLSEAASLCEQLIQRHGPSAAAYYLMGVIHDAADRKQAA 365

Query: 94  QRCYRKVLYLAPQHQAALLQLAALLQAQGDTAGAERLRQRASR 136
             CYRK LYL P H  A+  LAALLQ QGDTAGA  L+QRA R
Sbjct: 366 ADCYRKALYLEPAHAGAMTHLAALLQTQGDTAGARLLQQRARR 408


>ref|YP_346786.1| MCP methyltransferase, CheR-type [Pseudomonas fluorescens Pf0-1]
 gb|ABA72797.1| putative chemotaxis-related methyltransferase [Pseudomonas
           fluorescens Pf0-1]
          Length = 425

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 61/128 (47%), Positives = 79/128 (61%), Gaps = 7/128 (5%)

Query: 18  RNRPDSGINAFAAPVPAPLSAS---SQPLLQRARLLADAGQFAQAAALCEQAIDELGPSA 74
           RNRP +G+     P+PA   ++   +  LL     LA+ G+ A+A A CEQ +    P A
Sbjct: 297 RNRPFAGVT----PLPATAKSTNPDATTLLANIAALANEGKSAEARAACEQYLRSHEPVA 352

Query: 75  EAFYLQGLIHDAGGDAGQAQRCYRKVLYLAPQHQAALLQLAALLQAQGDTAGAERLRQRA 134
           + FY  GL+ D  G A +AQ  YRK LYL PQH  AL+ LAALLQAQGDTAGA RL++RA
Sbjct: 353 QVFYWLGLLSDVAGSALEAQGFYRKALYLEPQHPEALMHLAALLQAQGDTAGARRLQERA 412

Query: 135 SRVTTTEE 142
           +R   T +
Sbjct: 413 ARSGRTAD 420


>ref|YP_001351706.1| CheR chemotaxis protein methyltransferase [Janthinobacterium sp.
           Marseille]
 gb|ABR88989.1| CheR chemotaxis protein methyltransferase [Janthinobacterium sp.
           Marseille]
          Length = 424

 Score = 91.3 bits (225), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 60/131 (45%), Positives = 85/131 (64%), Gaps = 6/131 (4%)

Query: 20  RPDSGINAFAAPVPAPLSA-SSQPLLQRARLLADAGQFAQAAALCEQAIDELGPSAEAFY 78
           +P + +     P+  P++A S + LL RA   A+ G+ A+A ALC++ + + GP+A A+Y
Sbjct: 293 KPFANVVPPVVPIATPVAAPSGETLLTRAMQCANQGELAEADALCKEHVQQNGPNAAAYY 352

Query: 79  LQGLIHDAGGDAGQAQRCYRKVLYLAPQHQAALLQLAALLQAQGDTAGAERLRQRASRVT 138
           L GLI DA  D+G+A + YRK +YL P H  AL  LAALL AQGDTAGA+ ++QRA RV 
Sbjct: 353 LMGLISDARQDSGEALQFYRKTIYLQPNHYEALTHLAALLAAQGDTAGAQLMQQRAQRVA 412

Query: 139 TT-----EEPH 144
            +     E+PH
Sbjct: 413 ASATSAQEQPH 423


>ref|ZP_07773858.1| chemotaxis protein methyltransferase CheR [Pseudomonas fluorescens
           WH6]
 gb|EFQ64622.1| chemotaxis protein methyltransferase CheR [Pseudomonas fluorescens
           WH6]
          Length = 417

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/109 (45%), Positives = 67/109 (61%), Gaps = 3/109 (2%)

Query: 17  SRNRPDSGINAFAAPV-PAPLSASSQPLLQRARLLADAGQFAQAAALCEQAIDELGPSAE 75
           ++ RP S ++    P   AP  AS+  LL R   LA+ G+ A+A   CEQ ++   P+A+
Sbjct: 289 AKPRPFSTVSPQGVPTTSAPSDASA--LLSRIATLANEGKSAEARTACEQYLNSHPPAAQ 346

Query: 76  AFYLQGLIHDAGGDAGQAQRCYRKVLYLAPQHQAALLQLAALLQAQGDT 124
            FY  GL+ D  G A +AQ  YRK LYL PQH  AL+ LAALLQ+QGD+
Sbjct: 347 VFYWLGLLSDVAGSALEAQGYYRKALYLEPQHPQALMHLAALLQSQGDS 395