BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3528.p (223 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776415.1| chemotaxis signal transduction protein [Herb... 198 5e-49 ref|YP_001351705.1| CheW purine-binding chemotaxis protein [Jant... 197 1e-48 ref|ZP_04942183.1| Chemotaxis signal transduction protein [Burkh... 187 1e-45 ref|YP_624427.1| CheW protein [Burkholderia cenocepacia AU 1054]... 186 2e-45 ref|YP_002233444.1| putative chemotaxis-related protein [Burkhol... 186 3e-45 >ref|YP_003776415.1| chemotaxis signal transduction protein [Herbaspirillum seropedicae SmR1] gb|ADJ64507.1| chemotaxis signal transduction protein [Herbaspirillum seropedicae SmR1] Length = 211 Score = 198 bits (503), Expect = 5e-49, Method: Composition-based stats. Identities = 113/162 (69%), Positives = 126/162 (77%), Gaps = 4/162 (2%) Query: 65 ARAGVAAEEVQEDRAVLASALVVRIAGEWLAIATSVVQEVAETRPLHSLPHQRNTAIAGV 124 R+ A E A +S LVVRI EW AIAT+VVQEVAE R +HSLPHQRN AI GV Sbjct: 51 GRSRPAPRPAAELAAGRSSVLVVRIGVEWWAIATTVVQEVAEARVVHSLPHQRNPAILGV 110 Query: 125 VNIRGSLRICVSLARVFQLPDDTPA---PHLLVAAHEGQILVFPVEEVAGVHRYADESLA 181 +NIRG+LRICVSLA++FQ P P LLVA+H+GQ LVFPV+EVAGVHR+ D SL Sbjct: 111 LNIRGALRICVSLAQLFQFGAAAPKALPPKLLVASHDGQTLVFPVDEVAGVHRH-DGSLG 169 Query: 182 PVPTTLAQAAIQYTRGMVEWRGRPIGLLDHELLFYVLNRSMT 223 PVPTTLAQAAIQYTRGM+EWRG IGLLDHELLFYVLNRSMT Sbjct: 170 PVPTTLAQAAIQYTRGMLEWRGHAIGLLDHELLFYVLNRSMT 211 >ref|YP_001351705.1| CheW purine-binding chemotaxis protein [Janthinobacterium sp. Marseille] gb|ABR90413.1| CheW purine-binding chemotaxis protein [Janthinobacterium sp. Marseille] Length = 213 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 103/213 (48%), Positives = 139/213 (65%), Gaps = 6/213 (2%) Query: 13 LEDCWNRIGTKGDGSCPELAHHIRCLNCPTFARAAMQQLDRVQASDEVAQEWARAGVAAE 72 ++DCWNRIG +GD +CP+L + RCLNCPT+A AA LDR + ++ +W ++ + Sbjct: 5 IDDCWNRIGVRGDNTCPKLQDYFRCLNCPTYAAAASTLLDRPTSDADLISDWGQSKQSL- 63 Query: 73 EVQEDRAVLASALVVRIAGEWLAIATSVVQEVAETRPLHSLPHQRNTAIAGVVNIRGSLR 132 + + AV SAL+ R EWLA+ T + EVAE R +HSLPHQ N AI G+ N+RGSL Sbjct: 64 -ARSETAV--SALIFRAGIEWLALPTDAIVEVAEQRTIHSLPHQTNRAILGLSNVRGSLL 120 Query: 133 ICVSLARVFQLPDDTPAP--HLLVAAHEGQILVFPVEEVAGVHRYADESLAPVPTTLAQA 190 +CVSL ++ T A LLV AH+GQ LVFPV+EV GV R+ L VP+T+AQ+ Sbjct: 121 LCVSLTQMLGAERGTAAAIQRLLVVAHQGQSLVFPVDEVLGVQRFTQAELQAVPSTVAQS 180 Query: 191 AIQYTRGMVEWRGRPIGLLDHELLFYVLNRSMT 223 YT+ M+ + + IGLLD LLFY LNRS+T Sbjct: 181 NTTYTQAMIVSKDKKIGLLDCGLLFYALNRSLT 213 >ref|ZP_04942183.1| Chemotaxis signal transduction protein [Burkholderia cenocepacia PC184] gb|EAY65354.1| Chemotaxis signal transduction protein [Burkholderia cenocepacia PC184] Length = 231 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 99/219 (45%), Positives = 139/219 (63%), Gaps = 10/219 (4%) Query: 13 LEDCWNRIGTKGDGSCPELAHHIRCLNCPTFARAAMQQLDR---VQASDEVAQEWARAGV 69 ++DCWNRIGT+GD SC L +RCLNCP +A A + L+R V +V + + G Sbjct: 13 VDDCWNRIGTRGDRSCERLNDCLRCLNCPVYASNAAKLLERPLDVAEMTDVTRRMSAFG- 71 Query: 70 AAEEVQEDRAVLASALVVRIAGEWLAIATSVVQEVAETRPLHSLPHQRNTAIAGVVNIRG 129 A +D +AL R+A EWLA+ V++E+A TRP+HSLPH+RN+A+ GVVNIRG Sbjct: 72 TAHASDDDGVARHAALAFRVADEWLALPIGVLREIAGTRPIHSLPHRRNSAVRGVVNIRG 131 Query: 130 SLRICVSLARVFQL------PDDTPAPHLLVAAHEGQILVFPVEEVAGVHRYADESLAPV 183 +LRI +S+ + L DD LLVAAH+G+ +VFPV+EV GV R+ PV Sbjct: 132 TLRIAISIGALLGLDAGKAGSDDGRFTRLLVAAHQGEPVVFPVDEVEGVLRFGASDWVPV 191 Query: 184 PTTLAQAAIQYTRGMVEWRGRPIGLLDHELLFYVLNRSM 222 P T+ +A+ +RG++ WRG+ +GLLD + LF + RSM Sbjct: 192 PATVGRASAGLSRGVLSWRGKSVGLLDDDRLFDAVTRSM 230 >ref|YP_624427.1| CheW protein [Burkholderia cenocepacia AU 1054] ref|YP_837420.1| CheW protein [Burkholderia cenocepacia HI2424] ref|YP_001777376.1| CheW protein [Burkholderia cenocepacia MC0-3] gb|ABF79454.1| CheW protein [Burkholderia cenocepacia AU 1054] gb|ABK10527.1| CheW protein [Burkholderia cenocepacia HI2424] gb|ACA92886.1| CheW protein [Burkholderia cenocepacia MC0-3] Length = 233 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 99/221 (44%), Positives = 139/221 (62%), Gaps = 12/221 (5%) Query: 13 LEDCWNRIGTKGDGSCPELAHHIRCLNCPTFARAAMQQLDR---VQASDEVAQEWARAGV 69 ++DCWNRIGT+GD SC L +RCLNCP +A A + L+R V +V + + G Sbjct: 13 VDDCWNRIGTRGDRSCERLNDCLRCLNCPVYASNAAKLLERPLDVAEMTDVTRRMSAFG- 71 Query: 70 AAEEVQEDRAVLASALVVRIAGEWLAIATSVVQEVAETRPLHSLPHQRNTAIAGVVNIRG 129 A +D +AL R+A EWLA+ V++E+A TRP+HSLPH+RN+A+ GVVNIRG Sbjct: 72 TAHASDDDGVARHAALAFRVADEWLALPIGVLREIAGTRPIHSLPHRRNSAVRGVVNIRG 131 Query: 130 SLRICVSLARVFQL--------PDDTPAPHLLVAAHEGQILVFPVEEVAGVHRYADESLA 181 +LRI +S+ + L DD LLVAAH+G+ +VFPV+EV GV R+ Sbjct: 132 TLRIAISIGALLGLDAGKAGSGSDDGRFTRLLVAAHQGEPVVFPVDEVEGVLRFGASDWV 191 Query: 182 PVPTTLAQAAIQYTRGMVEWRGRPIGLLDHELLFYVLNRSM 222 PVP T+ +A+ +RG++ WRG+ +GLLD + LF + RSM Sbjct: 192 PVPATVGRASAGLSRGVLSWRGKSVGLLDDDRLFDAVTRSM 232 >ref|YP_002233444.1| putative chemotaxis-related protein [Burkholderia cenocepacia J2315] emb|CAR54682.1| putative chemotaxis-related protein [Burkholderia cenocepacia J2315] Length = 235 Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 99/221 (44%), Positives = 140/221 (63%), Gaps = 12/221 (5%) Query: 13 LEDCWNRIGTKGDGSCPELAHHIRCLNCPTFARAAMQQLDR---VQASDEVAQEWARAGV 69 ++DCWNRIGT+GD SC L +RCLNCP +A A + L+R V +V + + G Sbjct: 15 VDDCWNRIGTRGDRSCERLNDCLRCLNCPVYASHAAKLLERPLDVAEMTDVTRRMSAFG- 73 Query: 70 AAEEVQEDRAVLASALVVRIAGEWLAIATSVVQEVAETRPLHSLPHQRNTAIAGVVNIRG 129 A+ +D +AL R+A EWLA+ V++E+A TRP+HSLPH+RN+A+ GVVNIRG Sbjct: 74 TAQAGDDDGDTRHAALAFRVADEWLALPIGVLREIAGTRPIHSLPHRRNSAVRGVVNIRG 133 Query: 130 SLRICVSLARVFQL--------PDDTPAPHLLVAAHEGQILVFPVEEVAGVHRYADESLA 181 +LRI +S+ + L DD LLVAAH+G+ +VFPV+EV GV R+ Sbjct: 134 TLRIAISIGALLGLDAGKAGSGSDDGRFTRLLVAAHQGEPVVFPVDEVEGVLRFGASDWV 193 Query: 182 PVPTTLAQAAIQYTRGMVEWRGRPIGLLDHELLFYVLNRSM 222 PVP T+ +A+ +RG++ WRG+ +GLLD + LF + RSM Sbjct: 194 PVPATVGRASAGLSRGVLAWRGKSVGLLDDDRLFDAVTRSM 234