BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3525.p (370 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776412.1| response regulator protein [Herbaspirillum s... 582 e-164 ref|YP_001351702.1| response regulator/GGDEF domain-containing p... 488 e-136 ref|YP_297849.1| response regulator receiver modulated diguanyla... 415 e-114 ref|YP_586104.1| response regulator of a two-component system [C... 412 e-113 ref|YP_003979707.1| response regulator receiver modulated diguan... 408 e-112 >ref|YP_003776412.1| response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64504.1| response regulator protein [Herbaspirillum seropedicae SmR1] Length = 341 Score = 582 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 295/342 (86%), Positives = 315/342 (92%), Gaps = 1/342 (0%) Query: 29 MSSVQATDTPGGGPVLPADDYKIMVLLVDDQAMVGEAIRRALAKEENIDFHFCTRADEAL 88 MSSV TD P P LPAD+YKIMVLLVDDQ MVGEAIRRALA E +IDFHFCTRA+EAL Sbjct: 1 MSSVH-TDIPLVSPALPADEYKIMVLLVDDQPMVGEAIRRALANEPHIDFHFCTRAEEAL 59 Query: 89 AVAEKTRPTVILQDLVMPGVDGMTLVRQYRASAVLANVPIIVLSSRDDAEIKRDAFAGGA 148 VAE+TRPTVILQDLVMPGVDGMTLVRQYRASAVL NVPIIVLSSRDDA +KRDAFAGGA Sbjct: 60 TVAERTRPTVILQDLVMPGVDGMTLVRQYRASAVLVNVPIIVLSSRDDAVVKRDAFAGGA 119 Query: 149 NDYMVKLPDVIELVARLRYHSRSYINLLQRDAAYRALRESQQQLQKSNFELQRLTNTDGL 208 NDYMVKLPDVIELVAR+RYHSRSYINLLQRDAAY ALRESQQQLQKSNFELQRLTNTDGL Sbjct: 120 NDYMVKLPDVIELVARIRYHSRSYINLLQRDAAYSALRESQQQLQKSNFELQRLTNTDGL 179 Query: 209 TGIANRRYFDDYLGAEWRRARRDGLHLSLLLIDVDFFKLYNDNYGHVAGDAVLRRVAQTL 268 TGIANRRYFDDYLGAEWRRARRDGL L+LLLIDVDFFKLYNDNYGHVAGDAVLR+VA+ L Sbjct: 180 TGIANRRYFDDYLGAEWRRARRDGLDLALLLIDVDFFKLYNDNYGHVAGDAVLRQVAEAL 239 Query: 269 DESIQRPADLSARFGGEEFAMILPRTSLEGAQALGQKLCQMIEANQVPHERSKVSAWLTV 328 D SIQRPADLSARFGGEEFAMILPRT L+GA A+ QK+C ++E+ QVPHE S VSAWLTV Sbjct: 240 DSSIQRPADLSARFGGEEFAMILPRTGLDGAHAIAQKVCHLVESLQVPHEGSSVSAWLTV 299 Query: 329 SIGAATMVPTPEQDIRELIEMADRRLYLAKQQGRNRVVWQDG 370 S+GAAT+VP +Q++RELIE ADRRLYLAKQQGRNRVVWQDG Sbjct: 300 SVGAATLVPQEQQELRELIEAADRRLYLAKQQGRNRVVWQDG 341 >ref|YP_001351702.1| response regulator/GGDEF domain-containing protein [Janthinobacterium sp. Marseille] gb|ABR89542.1| response regulator/GGDEF domain protein [Janthinobacterium sp. Marseille] Length = 341 Score = 488 bits (1256), Expect = e-136, Method: Composition-based stats. Identities = 239/327 (73%), Positives = 280/327 (85%) Query: 44 LPADDYKIMVLLVDDQAMVGEAIRRALAKEENIDFHFCTRADEALAVAEKTRPTVILQDL 103 LPA++YKIMVLLVDDQ MVGEAIRRAL + NIDFH+C RADEAL VAEKT+PTVILQDL Sbjct: 15 LPAEEYKIMVLLVDDQPMVGEAIRRALLSDPNIDFHYCARADEALRVAEKTKPTVILQDL 74 Query: 104 VMPGVDGMTLVRQYRASAVLANVPIIVLSSRDDAEIKRDAFAGGANDYMVKLPDVIELVA 163 VMPGVDG+TLVRQYR +A+ ++PIIVLS+R+DAE+KRDAFA G NDYMVKLPD IEL+A Sbjct: 75 VMPGVDGLTLVRQYRQNAITCDIPIIVLSTREDAEVKRDAFATGVNDYMVKLPDTIELIA 134 Query: 164 RLRYHSRSYINLLQRDAAYRALRESQQQLQKSNFELQRLTNTDGLTGIANRRYFDDYLGA 223 R+RYHSRSY NLLQRDAAYRALRESQQQLQKSNFELQRLTNTDGLTGIANRRYFDDYL A Sbjct: 135 RIRYHSRSYNNLLQRDAAYRALRESQQQLQKSNFELQRLTNTDGLTGIANRRYFDDYLSA 194 Query: 224 EWRRARRDGLHLSLLLIDVDFFKLYNDNYGHVAGDAVLRRVAQTLDESIQRPADLSARFG 283 EW+RARR+ LS+LLIDVD FKLYND YGHVAGD VL++VA++L+ S RPADLSARFG Sbjct: 195 EWKRARREQQELSILLIDVDNFKLYNDTYGHVAGDLVLKQVAKSLEASAMRPADLSARFG 254 Query: 284 GEEFAMILPRTSLEGAQALGQKLCQMIEANQVPHERSKVSAWLTVSIGAATMVPTPEQDI 343 GEEFA+ILP T GA G+K+C +EA ++PH + + WLTVS+GAAT+ P EQ Sbjct: 255 GEEFAIILPATGSNGAVISGKKVCAAVEALRIPHAHAAIGEWLTVSVGAATITPQAEQVP 314 Query: 344 RELIEMADRRLYLAKQQGRNRVVWQDG 370 +LIE+AD+RLY AK+ G++RV+W+D Sbjct: 315 NDLIELADKRLYRAKELGKHRVIWEDA 341 >ref|YP_297849.1| response regulator receiver modulated diguanylate cyclase [Ralstonia eutropha JMP134] gb|AAZ63005.1| response regulator receiver modulated diguanylate cyclase [Ralstonia eutropha JMP134] Length = 359 Score = 415 bits (1066), Expect = e-114, Method: Composition-based stats. Identities = 211/332 (63%), Positives = 263/332 (79%), Gaps = 6/332 (1%) Query: 35 TDTPGGGPVLPADDYKIMVLLVDDQAMVGEAIRRALAKEENIDFHFCTRADEALAVAEKT 94 TDTP A+ Y +MVLLVDDQAM+GEA+RRALA E +IDFH+C D+A+AVAE+T Sbjct: 28 TDTPA------ANSYPVMVLLVDDQAMIGEAVRRALASEPDIDFHYCATPDDAVAVAERT 81 Query: 95 RPTVILQDLVMPGVDGMTLVRQYRASAVLANVPIIVLSSRDDAEIKRDAFAGGANDYMVK 154 RPTVILQDLVMPGVDG+TLVR+YR +A ++PIIVLS++++A +K AF+ GANDY+VK Sbjct: 82 RPTVILQDLVMPGVDGLTLVRRYRDNAATRDIPIIVLSTKEEAAMKSAAFSAGANDYLVK 141 Query: 155 LPDVIELVARLRYHSRSYINLLQRDAAYRALRESQQQLQKSNFELQRLTNTDGLTGIANR 214 LPD IELVAR+RYHSRSY+NLLQRD AYRALR+SQQQL ++N ELQRLTN+DGLTG++NR Sbjct: 142 LPDSIELVARIRYHSRSYLNLLQRDEAYRALRQSQQQLLETNLELQRLTNSDGLTGLSNR 201 Query: 215 RYFDDYLGAEWRRARRDGLHLSLLLIDVDFFKLYNDNYGHVAGDAVLRRVAQTLDESIQR 274 RYFD+YL AEW+RA+R+ L+LL+IDVD FK YND YGHVAGD VLRRVA L ++ R Sbjct: 202 RYFDEYLNAEWKRAQREQSQLALLMIDVDAFKAYNDTYGHVAGDEVLRRVAAVLRDNCSR 261 Query: 275 PADLSARFGGEEFAMILPRTSLEGAQALGQKLCQMIEANQVPHERSKVSAWLTVSIGAAT 334 PADL ARFGGEEF+M+LP TS GA+ +K+ + IE+ + H + +LTVSIGAA Sbjct: 262 PADLPARFGGEEFSMVLPSTSPGGARLFAEKVRRAIESLGIAHSGADTGGFLTVSIGAAV 321 Query: 335 MVPTPEQDIRELIEMADRRLYLAKQQGRNRVV 366 +VP Q L+E+AD LY AK+ GRN+VV Sbjct: 322 LVPEDGQPSSRLVEVADAGLYEAKRNGRNQVV 353 >ref|YP_586104.1| response regulator of a two-component system [Cupriavidus metallidurans CH34] gb|ABF10835.1| putative response regulator of a two-component system [Cupriavidus metallidurans CH34] Length = 335 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 205/319 (64%), Positives = 257/319 (80%) Query: 48 DYKIMVLLVDDQAMVGEAIRRALAKEENIDFHFCTRADEALAVAEKTRPTVILQDLVMPG 107 +Y MVLLVDDQA++GEAIRRALA E +IDFH+C++ +EA+ VAE+T+PTVILQDLVMPG Sbjct: 15 EYPAMVLLVDDQAIIGEAIRRALASESDIDFHYCSQPEEAVTVAERTKPTVILQDLVMPG 74 Query: 108 VDGMTLVRQYRASAVLANVPIIVLSSRDDAEIKRDAFAGGANDYMVKLPDVIELVARLRY 167 DG+TLVR+YR +A ++PIIVLS++++ +K AFA GANDY+VKLPD IEL+AR+RY Sbjct: 75 TDGLTLVRRYRENATTRDIPIIVLSTKEEPTMKSAAFAAGANDYLVKLPDSIELIARIRY 134 Query: 168 HSRSYINLLQRDAAYRALRESQQQLQKSNFELQRLTNTDGLTGIANRRYFDDYLGAEWRR 227 HSRSY+NLLQRD AYRALR+SQQQL ++N ELQRLTN+DGLT ++NRRYFD+YLGAEW+R Sbjct: 135 HSRSYLNLLQRDEAYRALRQSQQQLLETNLELQRLTNSDGLTSLSNRRYFDEYLGAEWKR 194 Query: 228 ARRDGLHLSLLLIDVDFFKLYNDNYGHVAGDAVLRRVAQTLDESIQRPADLSARFGGEEF 287 A+R+ L+LL+IDVD FK YND YGHVAGD VLRRVA + E+ RPADL ARFGGEEF Sbjct: 195 AQREQTQLALLMIDVDAFKGYNDTYGHVAGDEVLRRVAAVIRENCARPADLPARFGGEEF 254 Query: 288 AMILPRTSLEGAQALGQKLCQMIEANQVPHERSKVSAWLTVSIGAATMVPTPEQDIRELI 347 +MILP TS GA+ L +K+ + IE ++PH S ++TVSIG A +VP + D LI Sbjct: 255 SMILPATSPGGARLLAEKVRRAIETLRIPHACSPTGGFVTVSIGGAVIVPGGDADFSRLI 314 Query: 348 EMADRRLYLAKQQGRNRVV 366 E AD LY AK+ GRN+VV Sbjct: 315 EAADAGLYQAKRNGRNQVV 333 >ref|YP_003979707.1| response regulator receiver modulated diguanylate cyclase [Achromobacter xylosoxidans A8] gb|ADP16992.1| response regulator receiver modulated diguanylate cyclase [Achromobacter xylosoxidans A8] Length = 337 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 205/320 (64%), Positives = 254/320 (79%) Query: 47 DDYKIMVLLVDDQAMVGEAIRRALAKEENIDFHFCTRADEALAVAEKTRPTVILQDLVMP 106 + + MVLLVDDQ MVGEAIRRALA E NIDFH+C+ ++ALAVA +TRPTVILQDLV+P Sbjct: 14 NSHAAMVLLVDDQVMVGEAIRRALATEGNIDFHYCSDPEKALAVAIQTRPTVILQDLVLP 73 Query: 107 GVDGMTLVRQYRASAVLANVPIIVLSSRDDAEIKRDAFAGGANDYMVKLPDVIELVARLR 166 GVDG++LV++YR V ++PIIVLS+++D IK AFA GANDY+VKLPD IELVAR+R Sbjct: 74 GVDGLSLVQEYRGHPVTRDIPIIVLSTKEDPAIKSAAFAAGANDYLVKLPDSIELVARIR 133 Query: 167 YHSRSYINLLQRDAAYRALRESQQQLQKSNFELQRLTNTDGLTGIANRRYFDDYLGAEWR 226 YHSRSY+ L+QRD AY+ALR+SQQQL +SN EL+RLTN+DGLTG+ NRRYFD+YL AEW+ Sbjct: 134 YHSRSYLALVQRDEAYQALRQSQQQLLESNMELRRLTNSDGLTGLGNRRYFDEYLNAEWQ 193 Query: 227 RARRDGLHLSLLLIDVDFFKLYNDNYGHVAGDAVLRRVAQTLDESIQRPADLSARFGGEE 286 RARRDG +S+L+IDVD FK YND YGH+AGD L+RVA T+ S R DL+ARFGGEE Sbjct: 194 RARRDGREISMLMIDVDHFKAYNDTYGHIAGDEALKRVANTIFASCDRSTDLAARFGGEE 253 Query: 287 FAMILPRTSLEGAQALGQKLCQMIEANQVPHERSKVSAWLTVSIGAATMVPTPEQDIREL 346 FA++LP T A+ +KL + +EA Q+P + + WLTVSIG AT VP EQ +L Sbjct: 254 FALVLPGTPAGSARLAAEKLRRAVEALQIPQKDTGDGPWLTVSIGTATAVPQGEQPCTDL 313 Query: 347 IEMADRRLYLAKQQGRNRVV 366 I++ADR LY AK+QGRNRVV Sbjct: 314 IQVADRGLYQAKRQGRNRVV 333