BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3523.p         (193 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776410.1| diguanylate cyclase with PAS/PAC sensor prot...   172   3e-41
emb|CAL60520.2| conserved hypothetical protein, putative PAS, PA...    59   3e-07

>ref|YP_003776410.1| diguanylate cyclase with PAS/PAC sensor protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ64502.1| diguanylate cyclase with PAS/PAC sensor protein [Herbaspirillum
           seropedicae SmR1]
          Length = 611

 Score =  172 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 94/173 (54%), Positives = 119/173 (68%), Gaps = 6/173 (3%)

Query: 1   MMSERPPVQVDADAEFYRKALAFNNLTLSYIARGAPLEQLLDRIASGFSGTYPQRALAIF 60
           M SERPP +  AD+ F+ KALA++ LTL+YIARGAPL+QLLDRIA GF+  YP+R LAIF
Sbjct: 1   MTSERPPHR--ADSAFHEKALAYHQLTLTYIARGAPLDQLLDRIAVGFAQAYPERWLAIF 58

Query: 61  LFDPATQRMRVGAAPRMTPQFLAEVCALPVPDPDTPQFWHSFTALSERHQICLLELLPLR 120
           L+D   +RM+ GA P M P  +A++  LP    DTP  W  F  L+ RH + L E+LPLR
Sbjct: 59  LYDDQARRMQAGAVPYMAPALVAQIQDLPAEAADTPDVWQRFDELAGRHGVRLAEMLPLR 118

Query: 121 SFAGAVSGILAVCAQTRALADPA-HLDPDYREAVGAAVSMAMLAIERSLVPVH 172
           SFAG ++G++ + A     AD     D  YR+ V AAVSMAMLAIER+LVP H
Sbjct: 119 SFAGQLAGLMMIAATD---ADSGFEEDQAYRQTVSAAVSMAMLAIERALVPGH 168


>emb|CAL60520.2| conserved hypothetical protein, putative PAS, PAC and GGDEF domains
           [Herminiimonas arsenicoxydans]
          Length = 619

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 14/162 (8%)

Query: 13  DAEFYRKALAFNNLTLSYIARGAPLEQLLDRIASGFSGTYPQRALAIFLFDPATQRMRVG 72
           D   ++++L  NNLTL++IA  APL + L+ IAS      P   +A+ L +     +R+G
Sbjct: 21  DFNLHQRSLKVNNLTLAHIANDAPLTRTLNCIASDIEDQNPGIMIAVLLLESGNC-LRLG 79

Query: 73  AAPRMTPQFLAEVCALPV--------PDPDTPQFWHSFTALSERHQICLLELLPLRSFAG 124
           AAP + P +   +  + +         D +  +F      L+ +H + +  + P+RS A 
Sbjct: 80  AAPSLHPDYCRAIDGMTMDSKLQITAEDIEANRFCSRLHHLALQHDLHVCSMTPIRSAAN 139

Query: 125 AVSGILAVCAQTRALADPAHLDPDYREAVGAAVSMAMLAIER 166
            + GI    ++T      A      R  +  +  MA +AI R
Sbjct: 140 CMLGIFVAYSRTEDTVSDA-----CRHTIADSAIMASIAIAR 176