BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3522.p (426 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776410.1| diguanylate cyclase with PAS/PAC sensor prot... 728 0.0 emb|CAL60520.2| conserved hypothetical protein, putative PAS, PA... 494 e-137 ref|YP_001098649.1| hypothetical protein HEAR0293 [Herminiimonas... 492 e-137 ref|YP_295958.1| PAS:GGDEF [Ralstonia eutropha JMP134] >gi|72118... 468 e-129 ref|YP_004472989.1| diguanylate cyclase with PAS/PAC sensor [Pse... 455 e-126 >ref|YP_003776410.1| diguanylate cyclase with PAS/PAC sensor protein [Herbaspirillum seropedicae SmR1] gb|ADJ64502.1| diguanylate cyclase with PAS/PAC sensor protein [Herbaspirillum seropedicae SmR1] Length = 611 Score = 728 bits (1879), Expect = 0.0, Method: Composition-based stats. Identities = 361/424 (85%), Positives = 392/424 (92%) Query: 1 MALAIEGSGTGIWDRNAVTGEMYYSRGWKAILGYEDWELSSHLQDAYQRIHPDDLPYVQE 60 MALAIEGSGTGIWDRNAVTGEMYYSRGWKAILGYEDWELSSHL DAYQRIHPDDL YVQ+ Sbjct: 183 MALAIEGSGTGIWDRNAVTGEMYYSRGWKAILGYEDWELSSHLADAYQRIHPDDLAYVQQ 242 Query: 61 TIRQHFASRSDTYQVEHRIRCRDGSYKWISSRGKVVARDAEGNALRMIGTTTDITEVRRL 120 TIRQHF +RSD Y+VEHRIRC+DGSYKWISSRGKVVARDA+GNALRMIGTTTDITE++RL Sbjct: 243 TIRQHFEARSDHYEVEHRIRCQDGSYKWISSRGKVVARDAQGNALRMIGTTTDITEIKRL 302 Query: 121 TEKLAKSSRMLDYLTSEIPGMVFQFRVPPGERGYFTYVSEGARETYGLTPQQLLETPVII 180 TEKL KSSRMLDYLTSEIPGMVFQF+VPPG GYFTYVSEGARETYGLTPQQLLE P II Sbjct: 303 TEKLGKSSRMLDYLTSEIPGMVFQFKVPPGAPGYFTYVSEGARETYGLTPQQLLENPAII 362 Query: 181 DTVIHPEDMPLYEAARQAVLAGASHWMLEFRVITPGNGVRWLRGQARPRRLEDGTTLWHG 240 DTVIHP+DMPLYEAAR+AVL GA+HW LEFRV+ PG GVRWLRGQ+RPRRL+DGTTLWHG Sbjct: 363 DTVIHPDDMPLYEAAREAVLGGAAHWTLEFRVLPPGQGVRWLRGQSRPRRLDDGTTLWHG 422 Query: 241 FISDISESKAFELELQEFALTDYLTQLPNRRFFMQRLQDEYNRLQRGVLDTAAVLMCDLD 300 FISDIS+SKA ELELQEFALTDYLTQLPNRR+FMQRLQ+EY+R+QR V AAVLMCDLD Sbjct: 423 FISDISQSKAIELELQEFALTDYLTQLPNRRYFMQRLQEEYSRIQRSVTAGAAVLMCDLD 482 Query: 301 HFKRINDSLGHAVGDQVLKHFAQVLRSQLRKTDTAGRLGGEEFAVILAGANLHAAAEFAM 360 HFKRINDSLGHAVGD VL+HFA VL+SQLR++DTAGRLGGEEFA+IL GA+ AAA+FA Sbjct: 483 HFKRINDSLGHAVGDLVLRHFATVLKSQLRRSDTAGRLGGEEFAIILTGADQQAAADFAA 542 Query: 361 RLQASFASQPMLHEGREVEVTLSIGIALMQGDCAGQEQVLRASDDALYRAKEKGRNRFEF 420 RLQ FA QP++H+ REV+VTLSIG+ALMQ D AGQEQVLRASDDALYRAKEKGRNR EF Sbjct: 543 RLQNRFAGQPLIHDEREVKVTLSIGVALMQADSAGQEQVLRASDDALYRAKEKGRNRVEF 602 Query: 421 APFA 424 APF Sbjct: 603 APFG 606 >emb|CAL60520.2| conserved hypothetical protein, putative PAS, PAC and GGDEF domains [Herminiimonas arsenicoxydans] Length = 619 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 234/419 (55%), Positives = 303/419 (72%) Query: 1 MALAIEGSGTGIWDRNAVTGEMYYSRGWKAILGYEDWELSSHLQDAYQRIHPDDLPYVQE 60 +ALAIEGSGTGIWDRN TGE+ YS GWKAILGY D E+ + + D+Y RIHPDDL YVQ Sbjct: 197 LALAIEGSGTGIWDRNVPTGEISYSSGWKAILGYTDEEIGNRITDSYARIHPDDLAYVQA 256 Query: 61 TIRQHFASRSDTYQVEHRIRCRDGSYKWISSRGKVVARDAEGNALRMIGTTTDITEVRRL 120 I+ HF +++ Y VEHRIRC+DGSYKWISSRGKVV+RD +G LRMIGTTTDIT +R L Sbjct: 257 AIQAHFDQKTENYAVEHRIRCKDGSYKWISSRGKVVSRDGQGKPLRMIGTTTDITSMRSL 316 Query: 121 TEKLAKSSRMLDYLTSEIPGMVFQFRVPPGERGYFTYVSEGARETYGLTPQQLLETPVII 180 +++L +S ++ LT+E+PG+V+Q+RV P +F Y SE ++ Y LTP+Q+ T ++ Sbjct: 317 SDQLQQSIDLITSLTNEVPGLVYQYRVLPDGHAFFPYASEAIKDIYELTPEQVASTTTLV 376 Query: 181 DTVIHPEDMPLYEAARQAVLAGASHWMLEFRVITPGNGVRWLRGQARPRRLEDGTTLWHG 240 +IHP+D+ Y A+ A + W LE+RVI P G+RW +G+ARPRRL DG+TLWHG Sbjct: 377 HQIIHPDDVANYCASLHASASSLLPWHLEYRVILPRQGLRWRQGEARPRRLPDGSTLWHG 436 Query: 241 FISDISESKAFELELQEFALTDYLTQLPNRRFFMQRLQDEYNRLQRGVLDTAAVLMCDLD 300 FI+DI+E K E+ELQ FA D+LTQLPNRR+FM R+++E R +R AVLMCDLD Sbjct: 437 FITDITERKRIEIELQGFATIDFLTQLPNRRYFMTRMEEELARTRRIDGARTAVLMCDLD 496 Query: 301 HFKRINDSLGHAVGDQVLKHFAQVLRSQLRKTDTAGRLGGEEFAVILAGANLHAAAEFAM 360 HFK INDS GHA+GD VLKHFA +LR+ LR+ D GR+GGEEFAV+L A + A FA Sbjct: 497 HFKTINDSYGHAIGDLVLKHFAVILRNALRRNDMVGRVGGEEFAVVLFDAGVAEAEIFAQ 556 Query: 361 RLQASFASQPMLHEGREVEVTLSIGIALMQGDCAGQEQVLRASDDALYRAKEKGRNRFE 419 R+++ A P++ + + VT+SIGIA+M A + L SD ALYRAK+ GRNR E Sbjct: 557 RVRSQLAEIPLIALNQNINVTVSIGIAMMHASDANIDVSLSRSDTALYRAKQAGRNRIE 615 >ref|YP_001098649.1| hypothetical protein HEAR0293 [Herminiimonas arsenicoxydans] Length = 556 Score = 492 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 234/419 (55%), Positives = 303/419 (72%) Query: 1 MALAIEGSGTGIWDRNAVTGEMYYSRGWKAILGYEDWELSSHLQDAYQRIHPDDLPYVQE 60 +ALAIEGSGTGIWDRN TGE+ YS GWKAILGY D E+ + + D+Y RIHPDDL YVQ Sbjct: 134 LALAIEGSGTGIWDRNVPTGEISYSSGWKAILGYTDEEIGNRITDSYARIHPDDLAYVQA 193 Query: 61 TIRQHFASRSDTYQVEHRIRCRDGSYKWISSRGKVVARDAEGNALRMIGTTTDITEVRRL 120 I+ HF +++ Y VEHRIRC+DGSYKWISSRGKVV+RD +G LRMIGTTTDIT +R L Sbjct: 194 AIQAHFDQKTENYAVEHRIRCKDGSYKWISSRGKVVSRDGQGKPLRMIGTTTDITSMRSL 253 Query: 121 TEKLAKSSRMLDYLTSEIPGMVFQFRVPPGERGYFTYVSEGARETYGLTPQQLLETPVII 180 +++L +S ++ LT+E+PG+V+Q+RV P +F Y SE ++ Y LTP+Q+ T ++ Sbjct: 254 SDQLQQSIDLITSLTNEVPGLVYQYRVLPDGHAFFPYASEAIKDIYELTPEQVASTTTLV 313 Query: 181 DTVIHPEDMPLYEAARQAVLAGASHWMLEFRVITPGNGVRWLRGQARPRRLEDGTTLWHG 240 +IHP+D+ Y A+ A + W LE+RVI P G+RW +G+ARPRRL DG+TLWHG Sbjct: 314 HQIIHPDDVANYCASLHASASSLLPWHLEYRVILPRQGLRWRQGEARPRRLPDGSTLWHG 373 Query: 241 FISDISESKAFELELQEFALTDYLTQLPNRRFFMQRLQDEYNRLQRGVLDTAAVLMCDLD 300 FI+DI+E K E+ELQ FA D+LTQLPNRR+FM R+++E R +R AVLMCDLD Sbjct: 374 FITDITERKRIEIELQGFATIDFLTQLPNRRYFMTRMEEELARTRRIDGARTAVLMCDLD 433 Query: 301 HFKRINDSLGHAVGDQVLKHFAQVLRSQLRKTDTAGRLGGEEFAVILAGANLHAAAEFAM 360 HFK INDS GHA+GD VLKHFA +LR+ LR+ D GR+GGEEFAV+L A + A FA Sbjct: 434 HFKTINDSYGHAIGDLVLKHFAVILRNALRRNDMVGRVGGEEFAVVLFDAGVAEAEIFAQ 493 Query: 361 RLQASFASQPMLHEGREVEVTLSIGIALMQGDCAGQEQVLRASDDALYRAKEKGRNRFE 419 R+++ A P++ + + VT+SIGIA+M A + L SD ALYRAK+ GRNR E Sbjct: 494 RVRSQLAEIPLIALNQNINVTVSIGIAMMHASDANIDVSLSRSDTALYRAKQAGRNRIE 552 >ref|YP_295958.1| PAS:GGDEF [Ralstonia eutropha JMP134] gb|AAZ61114.1| PAS:GGDEF [Ralstonia eutropha JMP134] Length = 476 Score = 468 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 229/419 (54%), Positives = 293/419 (69%) Query: 1 MALAIEGSGTGIWDRNAVTGEMYYSRGWKAILGYEDWELSSHLQDAYQRIHPDDLPYVQE 60 +ALAI GSGTGIWDRN VTGE+ YS GWKA+LGY DWE+S+ ++D+YQR+HPDDL V+ Sbjct: 57 LALAIAGSGTGIWDRNVVTGEIQYSSGWKAMLGYADWEVSNRIEDSYQRLHPDDLDRVKA 116 Query: 61 TIRQHFASRSDTYQVEHRIRCRDGSYKWISSRGKVVARDAEGNALRMIGTTTDITEVRRL 120 T++ HF RSD+Y+VEHRIRCRDGSYKWI SRG+VV RDA G ALRM+GT+TDIT R + Sbjct: 117 TMQAHFEGRSDSYEVEHRIRCRDGSYKWICSRGRVVDRDASGRALRMVGTSTDITSQRAM 176 Query: 121 TEKLAKSSRMLDYLTSEIPGMVFQFRVPPGERGYFTYVSEGARETYGLTPQQLLETPVII 180 +E+L ++ ++ LT+E+PG+VFQ+R PG +F Y S G E Y LTP Q+ I Sbjct: 177 SERLLEAVSLITNLTNEVPGLVFQYRSVPGGPSFFPYASAGITEIYELTPAQVAADASCI 236 Query: 181 DTVIHPEDMPLYEAARQAVLAGASHWMLEFRVITPGNGVRWLRGQARPRRLEDGTTLWHG 240 D +IHP D+ Y A+ A A S W LE+RV P G+RW +G ARP+RL DG+ LWHG Sbjct: 237 DALIHPADLAAYRASFDASAAQLSPWHLEYRVQLPMQGLRWRQGDARPQRLPDGSILWHG 296 Query: 241 FISDISESKAFELELQEFALTDYLTQLPNRRFFMQRLQDEYNRLQRGVLDTAAVLMCDLD 300 FI+D++E K E ELQE A D LT LPNRR FM +++ LQ G A++MCDLD Sbjct: 297 FITDVTERKRIEAELQELATIDSLTGLPNRRHFMAQIETRLASLQSGRGAATALMMCDLD 356 Query: 301 HFKRINDSLGHAVGDQVLKHFAQVLRSQLRKTDTAGRLGGEEFAVILAGANLHAAAEFAM 360 HFK IND GH VGD+VL+HF +LR+ LR D AGRLGGEEF ++L GA++ A A Sbjct: 357 HFKSINDRWGHGVGDRVLRHFGSILRAHLRPGDMAGRLGGEEFGILLDGADMRGAVGVAR 416 Query: 361 RLQASFASQPMLHEGREVEVTLSIGIALMQGDCAGQEQVLRASDDALYRAKEKGRNRFE 419 ++Q A P++ + +++T+SIGIALM A E L SD ALYRAK+ GRNR E Sbjct: 417 QIQQRIAEYPLIEHEQRIDLTVSIGIALMTAADANAEAPLSRSDLALYRAKKSGRNRIE 475 >ref|YP_004472989.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas fulva 12-X] gb|AEF20895.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas fulva 12-X] Length = 560 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 211/419 (50%), Positives = 301/419 (71%) Query: 1 MALAIEGSGTGIWDRNAVTGEMYYSRGWKAILGYEDWELSSHLQDAYQRIHPDDLPYVQE 60 +ALAI+GSGTG+WDR+ +G ++YS WK++LGY E+S+ ++DA+ RIHPD+L V++ Sbjct: 140 LALAIQGSGTGVWDRDLSSGRIHYSAAWKSMLGYAANEVSNRIEDAFARIHPDELEQVKQ 199 Query: 61 TIRQHFASRSDTYQVEHRIRCRDGSYKWISSRGKVVARDAEGNALRMIGTTTDITEVRRL 120 T++ H + +++ YQVEHR+RCRDGSYKW+ SRGKVV+RDA GNALRM+G T+DI+ +R L Sbjct: 200 TMQAHISGQTEQYQVEHRLRCRDGSYKWVCSRGKVVSRDASGNALRMLGITSDISTLRSL 259 Query: 121 TEKLAKSSRMLDYLTSEIPGMVFQFRVPPGERGYFTYVSEGARETYGLTPQQLLETPVII 180 +E+L + ++ LT ++PG++FQF GYFTY+S G R+ +G+T +QLL+ P ++ Sbjct: 260 SERLQHNVELITQLTDQVPGVLFQFCSQTDGNGYFTYLSAGVRDLFGVTQEQLLQNPRLL 319 Query: 181 DTVIHPEDMPLYEAARQAVLAGASHWMLEFRVITPGNGVRWLRGQARPRRLEDGTTLWHG 240 D+ +HP+D+ ++ +R L W +E+RV P G+RW G+ARP+R DG+ +WHG Sbjct: 320 DSCVHPDDLEVFNQSRAQALHDVCIWHVEYRVQLPVQGLRWHLGEARPQRKADGSVVWHG 379 Query: 241 FISDISESKAFELELQEFALTDYLTQLPNRRFFMQRLQDEYNRLQRGVLDTAAVLMCDLD 300 ++DI+E K FE EL EFA D LTQL NRR FM L+ E R+QR L T+++LMCDLD Sbjct: 380 MVTDITERKRFERELHEFASMDALTQLSNRRVFMDYLETEQARVQRRDLSTSSLLMCDLD 439 Query: 301 HFKRINDSLGHAVGDQVLKHFAQVLRSQLRKTDTAGRLGGEEFAVILAGANLHAAAEFAM 360 HFK +ND GH VGD+ L+HF+ +LRSQLR +D AGR+GGEEFAV+L+GA A +FA Sbjct: 440 HFKLVNDRWGHGVGDRALRHFSNILRSQLRASDLAGRIGGEEFAVLLSGAGSFPARDFAC 499 Query: 361 RLQASFASQPMLHEGREVEVTLSIGIALMQGDCAGQEQVLRASDDALYRAKEKGRNRFE 419 R+Q + A+QP+ + + +TLSIGI + A + L +D ALYRAK+ GRNR E Sbjct: 500 RVQHALANQPLRVDSEAIHLTLSIGITQLSPQDATPDNALSRADKALYRAKQNGRNRVE 558