BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3519.p         (173 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776407.1| hypothetical protein Hsero_3011 [Herbaspiril...   258   3e-67
ref|YP_004752239.1| hypothetical protein CFU_1584 [Collimonas fu...   170   9e-41
ref|YP_001100210.1| hypothetical protein HEAR1936 [Herminiimonas...   157   7e-37
emb|CAL62086.2| Conserved hypothetical protein, putative PIN dom...   157   8e-37
ref|YP_001353074.1| hypothetical protein mma_1384 [Janthinobacte...   155   2e-36

>ref|YP_003776407.1| hypothetical protein Hsero_3011 [Herbaspirillum seropedicae SmR1]
 gb|ADJ64499.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 171

 Score =  258 bits (658), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 140/169 (82%), Positives = 148/169 (87%), Gaps = 2/169 (1%)

Query: 1   MSIQATPSLSPAPSFPSGTPADVPAGRQRVVLDTNVCLDLFVFRDPRWAALQAALEQGTV 60
           MSI ATPS+    S P    A  P GRQRVVLDTNVCLDLFVFRDPRWAAL  ALE G+V
Sbjct: 1   MSILATPSVPAPLSLPPTAAA--PPGRQRVVLDTNVCLDLFVFRDPRWAALLQALEDGSV 58

Query: 61  EAYTREDCRSEWLAVLDYPHLPVTPETKPAICAEFDRLLRCLPLAQVNTFGLPVCTDRDD 120
           EAYTREDCRSEWLAVL+YPHLPVT E KPAICA+FDRLL CLPLA+VNTFGLP+CTDRDD
Sbjct: 59  EAYTREDCRSEWLAVLEYPHLPVTAENKPAICADFDRLLHCLPLAEVNTFGLPLCTDRDD 118

Query: 121 QKFLELALQCQAHVLVSKDKAVLKLGKRTVKRGLFAIVPPQLWRADAFL 169
           QKFLELALQC+AHVLVSKDKAVLKL KRT+KRGLFAIVPPQ WRADAFL
Sbjct: 119 QKFLELALQCRAHVLVSKDKAVLKLAKRTLKRGLFAIVPPQHWRADAFL 167


>ref|YP_004752239.1| hypothetical protein CFU_1584 [Collimonas fungivorans Ter331]
 gb|AEK61416.1| hypothetical protein CFU_1584 [Collimonas fungivorans Ter331]
          Length = 168

 Score =  170 bits (430), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 93/153 (60%), Positives = 110/153 (71%), Gaps = 9/153 (5%)

Query: 20  PADVPAGRQ------RVVLDTNVCLDLFVFRDPRWAALQAALEQGTVEAYTREDCRSEWL 73
           PAD+P   Q      R+V+DTNVCLDLFVFRDPRWA+L +AL+ G VEA TR DCR EW 
Sbjct: 11  PADLPMPLQASQTKPRIVIDTNVCLDLFVFRDPRWASLMSALQSGAVEAVTRADCRQEWQ 70

Query: 74  AVLDYPHLPVTPETKPAICAEFDRLLRCL---PLAQVNTFGLPVCTDRDDQKFLELALQC 130
            VL Y HLPVT +T+PA  AEFD L+ CL    L+      LP+CTDRDDQKFLELAL  
Sbjct: 71  MVLHYSHLPVTDDTRPACNAEFDALITCLEAEALSPRPGIRLPICTDRDDQKFLELALGA 130

Query: 131 QAHVLVSKDKAVLKLGKRTVKRGLFAIVPPQLW 163
            A +L++KDKA+LKL ++T K GLFAIV PQ W
Sbjct: 131 NATILITKDKALLKLARKTAKAGLFAIVAPQAW 163


>ref|YP_001100210.1| hypothetical protein HEAR1936 [Herminiimonas arsenicoxydans]
          Length = 156

 Score =  157 bits (396), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 78/137 (56%), Positives = 99/137 (72%), Gaps = 2/137 (1%)

Query: 29  RVVLDTNVCLDLFVFRDPRWAALQAALEQGTVEAYTREDCRSEWLAVLDYPHLPVTPETK 88
           R+VLDTNVCLDLFVFRDPRW  L AAL+ G+VEA TR+DCR EW  VL YPHL +    +
Sbjct: 8   RIVLDTNVCLDLFVFRDPRWTRLHAALKDGSVEAITRDDCRMEWSIVLRYPHLKLDDTAR 67

Query: 89  PAICAEFDRLLRCLPLAQVNTFG--LPVCTDRDDQKFLELALQCQAHVLVSKDKAVLKLG 146
             I  EFD L+RC  +  ++T    LP+C D+DDQKFLEL+    A VL++KDKA+LKL 
Sbjct: 68  LQIAEEFDALIRCTAMPGLDTEAAKLPICKDKDDQKFLELSRDINADVLITKDKALLKLA 127

Query: 147 KRTVKRGLFAIVPPQLW 163
           ++T + GLFAI+ P+ W
Sbjct: 128 RKTRRDGLFAIMTPEAW 144


>emb|CAL62086.2| Conserved hypothetical protein, putative PIN domain [Herminiimonas
           arsenicoxydans]
          Length = 161

 Score =  157 bits (396), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 78/137 (56%), Positives = 99/137 (72%), Gaps = 2/137 (1%)

Query: 29  RVVLDTNVCLDLFVFRDPRWAALQAALEQGTVEAYTREDCRSEWLAVLDYPHLPVTPETK 88
           R+VLDTNVCLDLFVFRDPRW  L AAL+ G+VEA TR+DCR EW  VL YPHL +    +
Sbjct: 13  RIVLDTNVCLDLFVFRDPRWTRLHAALKDGSVEAITRDDCRMEWSIVLRYPHLKLDDTAR 72

Query: 89  PAICAEFDRLLRCLPLAQVNTFG--LPVCTDRDDQKFLELALQCQAHVLVSKDKAVLKLG 146
             I  EFD L+RC  +  ++T    LP+C D+DDQKFLEL+    A VL++KDKA+LKL 
Sbjct: 73  LQIAEEFDALIRCTAMPGLDTEAAKLPICKDKDDQKFLELSRDINADVLITKDKALLKLA 132

Query: 147 KRTVKRGLFAIVPPQLW 163
           ++T + GLFAI+ P+ W
Sbjct: 133 RKTRRDGLFAIMTPEAW 149


>ref|YP_001353074.1| hypothetical protein mma_1384 [Janthinobacterium sp. Marseille]
 gb|ABR90531.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 155

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 79/138 (57%), Positives = 100/138 (72%), Gaps = 2/138 (1%)

Query: 28  QRVVLDTNVCLDLFVFRDPRWAALQAALEQGTVEAYTREDCRSEWLAVLDYPHLPVTPET 87
           QR+VLDTNVCLDLFVFRDPRWA L AA++ G VEA TR+DCR EW  VL YPHL +    
Sbjct: 8   QRIVLDTNVCLDLFVFRDPRWAQLLAAMQNGQVEALTRDDCRKEWSIVLAYPHLKLDEAA 67

Query: 88  KPAICAEFDRLLRCLPLAQVNTFG--LPVCTDRDDQKFLELALQCQAHVLVSKDKAVLKL 145
           +  + AEFD L+RC P+   +     LPVC D+DDQKFLEL+   +A VL++KDKA+LKL
Sbjct: 68  RVQVSAEFDALIRCHPIPATDEAAPRLPVCKDKDDQKFLELSRDVKADVLITKDKALLKL 127

Query: 146 GKRTVKRGLFAIVPPQLW 163
            ++T + GLF I+ P+ W
Sbjct: 128 ARKTRRDGLFEIMTPEAW 145