BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3517.p (581 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I ... 504 e-140 ref|YP_004751579.1| methyl-accepting chemotaxis sensory transduc... 483 e-134 ref|YP_003773827.1| methyl-accepting chemotaxis sensory transduc... 466 e-129 ref|YP_003777116.1| methyl-accepting chemotaxis protein [Herbasp... 463 e-128 ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herba... 450 e-124 >ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] gb|ADJ64222.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 341/582 (58%), Positives = 427/582 (73%), Gaps = 4/582 (0%) Query: 1 MNWFYDLRIARKLLLTFATILLLTGVLGVFSIVQLSRVNDASTEIATNSLPSVRYPLEAK 60 M WFYDLRI+RKL+ TF ++ + LGVFSI QL +VN ASTEI+TN LPS+R + Sbjct: 1 MKWFYDLRISRKLITTFLVVVAMVAALGVFSIRQLDQVNSASTEISTNWLPSIRTLARLQ 60 Query: 61 VALARIRTVQLQHLLPGNEANVEANEKVIGDMLAGLNKALDKYEPLVNMPDERTYFSAIK 120 +A++R+R+ +LQH+L + E E+ + + L A +Y ++ P+E+ + ++ Sbjct: 61 LAMSRLRSFELQHILAKDAKEYEEVERGMQVQMNNLKTAQAEYVTQISEPEEKAIYPEVE 120 Query: 121 SDLAVFTKQHQELAKLVRGQQIDQARELLMKQITPVYLRLFDNMDKAVAINIDASEKTDQ 180 +A F +H ++ L R + ++AR L + T Y +DK A+N ++ +++ Sbjct: 121 KLIATFVSEHDKIIALSRQGKDEEARNLQRGESTKAYRTSLQQIDKLAAVNDKGADISNK 180 Query: 181 EAQVRYENSRLLIGVLLAACIGLGLLLATWVARIVSRPLQEAMHVAERVAEGDLTVHIQP 240 +A Y +RL I V +AACIGL +LLA WV+R+++RPL+EA+ VA+RVA GDLT I+P Sbjct: 181 QADAIYAQARLWIIVTVAACIGLAMLLAVWVSRLIARPLEEAVSVAQRVAGGDLTTRIEP 240 Query: 241 AGRDETGRLMGSLKAMNDSLLRIVTQVREGTDTINTASREIASGNLDLSSRTEQQASSLE 300 AG+DETG+L+ +LK+MNDSL+ IV QVR GT TI TAS EIASGNLDLSSRTE+QASSLE Sbjct: 241 AGKDETGQLLVALKSMNDSLVGIVGQVRMGTQTITTASTEIASGNLDLSSRTEEQASSLE 300 Query: 301 ETASAMEEITSTVKQNADNARQANQLAHSASDVATQGGSVVSQVVDTMGAINASSRKIVD 360 ETASAMEE+TSTVKQNADNARQANQLA SAS+VA+QGG+VV+QVVDTMG+INASSRKI D Sbjct: 301 ETASAMEELTSTVKQNADNARQANQLAVSASEVASQGGAVVNQVVDTMGSINASSRKIAD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLIDD 420 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK LI+ Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIEG 420 Query: 421 SVAKVDTGSRLVEQAGSTMTEVVASVRRVTDIVSEITAASSEQSNGIEQVNLAITQMDEV 480 SVA+VD GS+LVE+AG TM+EVV SVRRVTDIV EI++AS EQS GIEQVNLAI QMDEV Sbjct: 421 SVAQVDMGSKLVERAGITMSEVVQSVRRVTDIVGEISSASQEQSEGIEQVNLAIAQMDEV 480 Query: 481 TQQNAALVEQAAAAAGSLQDQAGRLSELVSVFKLERA-HAAAQAAPVAARSAALSPKPQA 539 TQQNAALVE+AAAAA SLQ+QA L++ V FKLE+ A PV A S A + + Sbjct: 481 TQQNAALVEEAAAAAQSLQEQAETLTQTVGFFKLEQQPDEPASRPPVRAASVARTAAVRH 540 Query: 540 RPQPKPAVRTTAAAPALPPAPAPKAGKAAKAPSADEGDWEQF 581 P +PA A+A PA + A + D G WEQF Sbjct: 541 APATRPAATLAASAAPAKPASGSRLPGGA---AEDGGSWEQF 579 >ref|YP_004751579.1| methyl-accepting chemotaxis sensory transducer [Collimonas fungivorans Ter331] gb|AEK60756.1| methyl-accepting chemotaxis sensory transducer [Collimonas fungivorans Ter331] Length = 635 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 311/523 (59%), Positives = 392/523 (74%), Gaps = 1/523 (0%) Query: 1 MNWFYDLRIARKLLLTFATILLLTGVLGVFSIVQLSRVNDASTEIATNSLPSVRYPLEAK 60 M WFY+L+IA KLLL+FA IL+LT VLGV SI QL +VN + EI +N LPSVR L K Sbjct: 96 MTWFYNLKIATKLLLSFALILMLTLVLGVASITQLGQVNATTNEINSNWLPSVRMLLTLK 155 Query: 61 VALARIRTVQLQHLLPGNEANVEANEKVIGDMLAGLNKALDKYEPLVNMPDERTYFSAIK 120 LA +R V++QH++ + A+++ + + IGD+ + K L +Y PLV+ +ER + +K Sbjct: 156 SNLALLRNVEMQHVMSNDAADMDKSAQFIGDIRGDVQKTLSEYAPLVS-EEERAVYDQLK 214 Query: 121 SDLAVFTKQHQELAKLVRGQQIDQARELLMKQITPVYLRLFDNMDKAVAINIDASEKTDQ 180 + + + +++ + R + D A + + + L +++ V IN D S + + Sbjct: 215 DKIPRYLEMDKKIVDISRAFRKDDAIKEIRGDSLAAIVELDKQVERLVKINSDGSAASAK 274 Query: 181 EAQVRYENSRLLIGVLLAACIGLGLLLATWVARIVSRPLQEAMHVAERVAEGDLTVHIQP 240 + + Y +R + L+ A + LG LA W+AR+V++PL+ A+ VA RVA GDLT I+ Sbjct: 275 DGEAIYNKARFWMIGLMIAMLLLGFALALWIARVVAQPLEFAVDVARRVAGGDLTADIEV 334 Query: 241 AGRDETGRLMGSLKAMNDSLLRIVTQVREGTDTINTASREIASGNLDLSSRTEQQASSLE 300 DETG+LM +LK MN SL +IV +VR GTDTI TAS +IA+GN +LS RTEQQASSLE Sbjct: 335 RSSDETGQLMQALKDMNHSLQKIVGEVRSGTDTIATASGQIAAGNQNLSQRTEQQASSLE 394 Query: 301 ETASAMEEITSTVKQNADNARQANQLAHSASDVATQGGSVVSQVVDTMGAINASSRKIVD 360 ETA++ME++TSTVKQNADNA QANQLA SAS+VA GG+VV+QVV TMGAIN SS+KIVD Sbjct: 395 ETAASMEQLTSTVKQNADNASQANQLAVSASEVALHGGTVVTQVVSTMGAINTSSKKIVD 454 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLIDD 420 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSAAAAKEIK LIDD Sbjct: 455 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRSAAAAKEIKGLIDD 514 Query: 421 SVAKVDTGSRLVEQAGSTMTEVVASVRRVTDIVSEITAASSEQSNGIEQVNLAITQMDEV 480 SV KV G+RLV+QAGSTM E+VASVRRVTDI+ EITAAS EQ+ GIEQ+N AI+QMD+V Sbjct: 515 SVEKVGLGTRLVDQAGSTMEEIVASVRRVTDIMGEITAASQEQTAGIEQINQAISQMDQV 574 Query: 481 TQQNAALVEQAAAAAGSLQDQAGRLSELVSVFKLERAHAAAQA 523 TQQNAALVE+AAAAA SLQDQAG L+ +V FKLERAH AAQA Sbjct: 575 TQQNAALVEEAAAAAASLQDQAGALAGVVGAFKLERAHNAAQA 617 >ref|YP_003773827.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] gb|ADJ61919.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 567 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 316/563 (56%), Positives = 404/563 (71%), Gaps = 4/563 (0%) Query: 1 MNWFYDLRIARKLLLTFATILLLTGVLGVFSIVQLSRVNDASTEIATNSLPSVRYPLEAK 60 MNWFY+ RIA KLLL FA +LLLTG LG+FSIVQL +VN A+TE+ATN LPS+R + K Sbjct: 1 MNWFYNRRIATKLLLAFACVLLLTGGLGIFSIVQLHKVNQAATELATNWLPSIRSLNDMK 60 Query: 61 VALARIRTVQLQ-HLLPGNEANVEANEKVIGDMLAGLNKALDKYEPLVNMPDERTYFSAI 119 VAL+R+R Q Q L G+E A ++ L L +A +Y ++ P E+ F + Sbjct: 61 VALSRVRANQAQLALYDGDEKQSSAVIGLMNKNLEALAEARKQYTGQISEPGEKALFPGV 120 Query: 120 KSDLAVFTKQHQELAKLVRGQQIDQARELLMKQITPVYLRLFDNMDKAVAINIDASEKTD 179 + + F H + VR ++D+A+ LL+ YL L +++DK +N+D S ++ Sbjct: 121 NARIDKFIALHGDTLAAVRAGKLDEAKRLLLGPAFENYLSLLNDLDKLAQVNLDGSVQST 180 Query: 180 QEAQVRYENSRLLIGVLLAACIGLGLLLATWVARIVSRPLQEAMHVAERVAEGDLTVHIQ 239 + A+ Y+ +++ + +L + GL LA ++AR+++ PL+ A A +A GDLT I Sbjct: 181 RSAETTYDQAQVWVVAILIGALLAGLALALFIARVIATPLRSAGEFAHLIAAGDLTADIT 240 Query: 240 PAGRDETGRLMGSLKAMNDSLLRIVTQVREGTDTINTASREIASGNLDLSSRTEQQASSL 299 DETG+L +L AMN SL RIV+QVR GTD I TAS +I+SGNLDLSSRTE+QASSL Sbjct: 241 ARSDDETGQLTAALAAMNTSLRRIVSQVRSGTDAIATASGQISSGNLDLSSRTEEQASSL 300 Query: 300 EETASAMEEITSTVKQNADNARQANQLAHSASDVATQGGSVVSQVVDTMGAINASSRKIV 359 EETASAMEE+TSTV+QNA+NARQANQLA SAS +A +GG VVSQV++TMG+I+ASS+KIV Sbjct: 301 EETASAMEELTSTVRQNAENARQANQLALSASTIAEEGGKVVSQVIETMGSIDASSKKIV 360 Query: 360 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLID 419 DIISVID IAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA AAKEIKTLID Sbjct: 361 DIISVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAAKEIKTLID 420 Query: 420 DSVAKVDTGSRLVEQAGSTMTEVVASVRRVTDIVSEITAASSEQSNGIEQVNLAITQMDE 479 +SV +V GS LV++AG T++EVV+SV+RVTD++SEI+AAS EQ+ GIEQVN AITQMDE Sbjct: 421 NSVQQVGLGSGLVQKAGVTISEVVSSVQRVTDVMSEISAASGEQTQGIEQVNQAITQMDE 480 Query: 480 VTQQNAALVEQAAAAAGSLQDQAGRLSELVSVFKLERAHAAAQAAPVAARSAALSPKPQA 539 VTQQNAALVE+AA+A+ SL QA RLSELV VF+L A +AA + P+ Sbjct: 481 VTQQNAALVEEAASASQSLSHQAQRLSELVGVFRLPGAARQQVPEVAVVATAAPAYTPR- 539 Query: 540 RPQPKPAVRTTAAAPALPPAPAP 562 +P A T+ A PAL A P Sbjct: 540 --RPAVAGATSTATPALAVAQGP 560 >ref|YP_003777116.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] gb|ADJ65208.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 571 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 316/582 (54%), Positives = 414/582 (71%), Gaps = 12/582 (2%) Query: 1 MNWFYDLRIARKLLLTFATILLLTGVLGVFSIVQLSRVNDASTEIATNSLPSVRYPLEAK 60 MNWFY+L+IA KL F +L+ LG FS ++L+ VN +ST+IA N LPS+ + Sbjct: 1 MNWFYNLKIAHKLNAAFLVVLVFIIGLGGFSSLELAAVNKSSTDIARNWLPSIDALSKMS 60 Query: 61 VALARIRTVQLQHLLPGNEANVEANEKVIGDMLAGLNKALDKYEPLVNMPDERTYFSAIK 120 +ALAR R+ +Q LL ++ +A+ + +A L K + +Y LV+ P E+ + I+ Sbjct: 61 LALARSRSFDMQQLLTADKQEEKASRERADKQMATLLKEVARYGKLVSEPREKELYPEIE 120 Query: 121 SDLAVFTKQHQELAKLVRGQQIDQARELLMKQITPVYLRLFDNMDKAVAINIDASEKTDQ 180 ++A++ + H+ ++ L Q A L+ TPVY +L + + + +N + +D Sbjct: 121 RNIALYKEAHERMSALFEQDQKQAAHALMNSTSTPVYRKLQEQIGELSEVNSKGAALSDA 180 Query: 181 EAQVRYENSRLLIGVLLAACIGLGLLLATWVARIVSRPLQEAMHVAERVAEGDLTVHIQP 240 +A Y + + I L+ C+ L + L+ W+AR+V+RPL A+ +A +VA GDLT I Sbjct: 181 DADHIYGQANMAILALVTTCVVLAMALSWWIARLVARPLANAVDIARQVAAGDLTADIPT 240 Query: 241 AGRDETGRLMGSLKAMNDSLLRIVTQVREGTDTINTASREIASGNLDLSSRTEQQASSLE 300 A RDETG+L+ +L+ MN +LL IV +VR+GTDTI TAS EIA+GN+DLSSRTEQQA +LE Sbjct: 241 AHRDETGQLLEALRQMNGNLLNIVREVRQGTDTITTASAEIATGNMDLSSRTEQQAGALE 300 Query: 301 ETASAMEEITSTVKQNADNARQANQLAHSASDVATQGGSVVSQVVDTMGAINASSRKIVD 360 ETASAMEE+TSTV+QN+DNARQANQLA +AS+VA GG+VV +VV TM AIN SSRKIVD Sbjct: 301 ETASAMEELTSTVRQNSDNARQANQLAVNASEVAQAGGTVVGKVVATMSAINDSSRKIVD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLIDD 420 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSAAAA EIK LIDD Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAHEIKALIDD 420 Query: 421 SVAKVDTGSRLVEQAGSTMTEVVASVRRVTDIVSEITAASSEQSNGIEQVNLAITQMDEV 480 SVAKVDTGS+LV++AG TM EVVASV+RV+DIV+EITAA +EQ+ GIEQ+N A+ QMDE Sbjct: 421 SVAKVDTGSKLVDEAGQTMNEVVASVKRVSDIVAEITAAGAEQTQGIEQINNAVVQMDEN 480 Query: 481 TQQNAALVEQAAAAAGSLQDQAGRLSELVSVFKLERAHAAAQAAPVAARSAALSPKPQAR 540 TQQNAALVEQAAAAA +LQ+QAGRLSE VSVF+L+ AQ PV AA + +P+ Sbjct: 481 TQQNAALVEQAAAAAKALQEQAGRLSETVSVFRLD-----AQHVPVVVSRAAATAQPERD 535 Query: 541 PQP-KPAVRTTAAAPALPPAPAPKAGKAAKAPSADEGDWEQF 581 P +PA+ + + PA + + SA++GDWEQF Sbjct: 536 ITPARPALAQSRSKVMARPA------HSNTSASAEQGDWEQF 571 >ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] gb|ADJ66081.1| methyl-accepting chemotaxis protein I, serine sensor receptor protein [Herbaspirillum seropedicae SmR1] Length = 516 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 310/516 (60%), Positives = 390/516 (75%) Query: 1 MNWFYDLRIARKLLLTFATILLLTGVLGVFSIVQLSRVNDASTEIATNSLPSVRYPLEAK 60 M WF +L+IA+KL+++FA +++LT +LG+F+I +L VN AST++ATN LP+++ + Sbjct: 1 MTWFNNLKIAKKLIVSFAAVIVLTVILGLFAIRELKAVNQASTDMATNWLPTIKAAQSIQ 60 Query: 61 VALARIRTVQLQHLLPGNEANVEANEKVIGDMLAGLNKALDKYEPLVNMPDERTYFSAIK 120 +L R+R +LQ + A E K I L L K YE ++ +E+ + Sbjct: 61 ASLPRMRISELQMVTAATPAEREDALKAIKSRLDILAKQRAAYEAQISEAEEKVLYEKFS 120 Query: 121 SDLAVFTKQHQELAKLVRGQQIDQARELLMKQITPVYLRLFDNMDKAVAINIDASEKTDQ 180 A + + +ELA++ + ++AR L + + +NMD+ + +N S+++D Sbjct: 121 KSFATYLEIDKELARISAEGKEEEARALFKGDSNKTFRSMIENMDEIIKVNDAGSKRSDD 180 Query: 181 EAQVRYENSRLLIGVLLAACIGLGLLLATWVARIVSRPLQEAMHVAERVAEGDLTVHIQP 240 A+ Y ++ L I LLAA + + L LA VAR VSRPL EA+ VAERVA+GDLT+ I+ Sbjct: 181 MAEQVYRSATLWIIGLLAAIVVIALGLAVMVARAVSRPLNEAVAVAERVAQGDLTMDIRA 240 Query: 241 AGRDETGRLMGSLKAMNDSLLRIVTQVREGTDTINTASREIASGNLDLSSRTEQQASSLE 300 DETG LM SL+AMNDSL +IV +VR GTDTI TAS+EIA+GNLDLSSRTE+QA SLE Sbjct: 241 TSTDETGMLMHSLRAMNDSLQQIVGEVRTGTDTITTASQEIATGNLDLSSRTEEQAGSLE 300 Query: 301 ETASAMEEITSTVKQNADNARQANQLAHSASDVATQGGSVVSQVVDTMGAINASSRKIVD 360 ETASAMEE+T+TVKQNADNARQANQLA SASD+ATQGG+VV QVV TM I SS +I D Sbjct: 301 ETASAMEELTATVKQNADNARQANQLAASASDIATQGGAVVGQVVQTMEGITESSNRIAD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLIDD 420 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AAKEIK LIDD Sbjct: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDD 420 Query: 421 SVAKVDTGSRLVEQAGSTMTEVVASVRRVTDIVSEITAASSEQSNGIEQVNLAITQMDEV 480 SV KV GS+LVE+AG+TM+EVVASVRRVTD+V+EI+AAS+EQS GIE++N AITQMDEV Sbjct: 421 SVEKVGAGSQLVERAGATMSEVVASVRRVTDVVAEISAASNEQSTGIEEINRAITQMDEV 480 Query: 481 TQQNAALVEQAAAAAGSLQDQAGRLSELVSVFKLER 516 TQQNAALVE+AAAAA SLQDQA RLS++VSVFKL+R Sbjct: 481 TQQNAALVEEAAAAAQSLQDQAARLSQVVSVFKLQR 516