BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3516.p (258 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776405.1| hypothetical protein Hsero_3009 [Herbaspiril... 414 e-114 ref|NP_520130.1| hypothetical protein RSc2009 [Ralstonia solanac... 377 e-103 emb|CBJ37568.1| conserved protein of unknown function, DUF328 [R... 376 e-102 emb|CCA83399.1| conserved hypothetical protein, DUF328 [blood di... 374 e-102 ref|YP_001100209.1| hypothetical protein HEAR1935 [Herminiimonas... 374 e-102 >ref|YP_003776405.1| hypothetical protein Hsero_3009 [Herbaspirillum seropedicae SmR1] gb|ADJ64497.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 227 Score = 414 bits (1063), Expect = e-114, Method: Composition-based stats. Identities = 209/220 (95%), Positives = 215/220 (97%) Query: 1 MLIVLSPAKSLDYDTPPTTDLHTTPAFVPRSAELIEVLKTKSPAEIGSLMGISDQLSVLN 60 MLIVLSPAKSLDYDTPPTTD+HTTPAFVPRSAELIEVLKTKSPAEIGSLMGISDQL+VLN Sbjct: 1 MLIVLSPAKSLDYDTPPTTDVHTTPAFVPRSAELIEVLKTKSPAEIGSLMGISDQLAVLN 60 Query: 61 VNRYASWSRKFTTKNAKQAVLAFNGDVYEGLDAGSLKAKQLDYLQNHVRILSGLYGMLRP 120 VNRYASWSRKF+TKNAKQAVLAFNGDVYEGLDA SL A+QLDYLQ HVRILSGLYGMLRP Sbjct: 61 VNRYASWSRKFSTKNAKQAVLAFNGDVYEGLDAASLNARQLDYLQGHVRILSGLYGMLRP 120 Query: 121 LDLMQPYRLEMGTKLANPGGKDLYAFWGNEITEALNDELAAQKTPVLVNLASEEYFKVVK 180 LDLMQPYRLEMGTKLANPGGKDLYAFWG+EITEALN EL AQKTPVLVNLASEEYFKVVK Sbjct: 121 LDLMQPYRLEMGTKLANPGGKDLYAFWGSEITEALNGELVAQKTPVLVNLASEEYFKVVK 180 Query: 181 PKLLKAQVISPVFEDWKGGKYKIISFYAKRARGLMARYAA 220 PKLLKAQVI+PVFEDWKGGKYKIISFYAKRARGLMARYAA Sbjct: 181 PKLLKAQVIAPVFEDWKGGKYKIISFYAKRARGLMARYAA 220 >ref|NP_520130.1| hypothetical protein RSc2009 [Ralstonia solanacearum GMI1000] sp|Q8XXV4|Y2009_RALSO RecName: Full=UPF0246 protein RSc2009 emb|CAD15711.1| conserved hypothetical protein [Ralstonia solanacearum GMI1000] Length = 257 Score = 377 bits (968), Expect = e-103, Method: Composition-based stats. Identities = 184/255 (72%), Positives = 209/255 (81%) Query: 1 MLIVLSPAKSLDYDTPPTTDLHTTPAFVPRSAELIEVLKTKSPAEIGSLMGISDQLSVLN 60 M+IVLSPAKSLDYDTPP HT P F+ RSA LIE L+ SPA+IG+LM ISD L+VLN Sbjct: 1 MIIVLSPAKSLDYDTPPRIKTHTLPDFIERSAVLIETLRKLSPAQIGTLMHISDPLAVLN 60 Query: 61 VNRYASWSRKFTTKNAKQAVLAFNGDVYEGLDAGSLKAKQLDYLQNHVRILSGLYGMLRP 120 NRYA WS +FT N+KQAVLAF+GDVY GLDA +L A L + Q H+RILSGLYG+LRP Sbjct: 61 ANRYADWSTEFTADNSKQAVLAFDGDVYGGLDANTLSADDLQFAQQHLRILSGLYGVLRP 120 Query: 121 LDLMQPYRLEMGTKLANPGGKDLYAFWGNEITEALNDELAAQKTPVLVNLASEEYFKVVK 180 LD MQPYRLEMGT+LANPGGKDLYAFWG+++T ALN L A PVLVNLASEEYFKVV+ Sbjct: 121 LDRMQPYRLEMGTRLANPGGKDLYAFWGDDVTLALNALLQADDDPVLVNLASEEYFKVVR 180 Query: 181 PKLLKAQVISPVFEDWKGGKYKIISFYAKRARGLMARYAAEKNISQPEKLKAFDVEGYAF 240 PK+LKA++++PVFEDWKGG+YKIISFYAKRARGLMARYA E I+ P KLK FD EGYAF Sbjct: 181 PKVLKARIVTPVFEDWKGGRYKIISFYAKRARGLMARYAIEHRIADPRKLKHFDAEGYAF 240 Query: 241 APEASSASSWVFRRK 255 A EAS WVFRRK Sbjct: 241 AAEASDDERWVFRRK 255 >emb|CBJ37568.1| conserved protein of unknown function, DUF328 [Ralstonia solanacearum CMR15] Length = 257 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 182/255 (71%), Positives = 209/255 (81%) Query: 1 MLIVLSPAKSLDYDTPPTTDLHTTPAFVPRSAELIEVLKTKSPAEIGSLMGISDQLSVLN 60 M+IVLSPAKSLDYDTPP HT P F+ RSA LIE L+ SPA+IG+LM ISD L+VLN Sbjct: 1 MIIVLSPAKSLDYDTPPRIKTHTLPDFIERSAALIETLRKLSPAQIGTLMHISDPLAVLN 60 Query: 61 VNRYASWSRKFTTKNAKQAVLAFNGDVYEGLDAGSLKAKQLDYLQNHVRILSGLYGMLRP 120 NRYA WS +FT N+KQAVLAF+GDVY GLDA +L A L + Q H+RILSGLYG+LRP Sbjct: 61 ANRYADWSTEFTADNSKQAVLAFDGDVYGGLDANTLSADDLQFAQQHLRILSGLYGVLRP 120 Query: 121 LDLMQPYRLEMGTKLANPGGKDLYAFWGNEITEALNDELAAQKTPVLVNLASEEYFKVVK 180 LD MQPYRLEMGT+LANPGGKDLYAFWG+++T ALN L A PVLVNLASEEYFKVV+ Sbjct: 121 LDRMQPYRLEMGTRLANPGGKDLYAFWGDDVTLALNALLQADDDPVLVNLASEEYFKVVR 180 Query: 181 PKLLKAQVISPVFEDWKGGKYKIISFYAKRARGLMARYAAEKNISQPEKLKAFDVEGYAF 240 PK+LKA++++PVFEDWKGG+YKIISFYAKRARGLMARYA E I+ P KL+ FD EGYAF Sbjct: 181 PKVLKARIVTPVFEDWKGGRYKIISFYAKRARGLMARYAIEHRIADPRKLRHFDAEGYAF 240 Query: 241 APEASSASSWVFRRK 255 A +AS WVFRRK Sbjct: 241 AADASDDERWVFRRK 255 >emb|CCA83399.1| conserved hypothetical protein, DUF328 [blood disease bacterium R229] Length = 257 Score = 374 bits (961), Expect = e-102, Method: Composition-based stats. Identities = 182/255 (71%), Positives = 208/255 (81%) Query: 1 MLIVLSPAKSLDYDTPPTTDLHTTPAFVPRSAELIEVLKTKSPAEIGSLMGISDQLSVLN 60 M+IVLSPAKSLDYDTPP HT P F+ RSA LIE L+ SPA+IG+LM ISD L+VLN Sbjct: 1 MIIVLSPAKSLDYDTPPRIKTHTLPDFIERSAILIETLRKLSPAQIGTLMHISDPLAVLN 60 Query: 61 VNRYASWSRKFTTKNAKQAVLAFNGDVYEGLDAGSLKAKQLDYLQNHVRILSGLYGMLRP 120 NRYA WS FT N+KQAVLAF+GDVY GLDA +L A L + Q H+RILSGLYG+LRP Sbjct: 61 ANRYADWSTDFTADNSKQAVLAFDGDVYGGLDANALSADDLQFAQQHLRILSGLYGVLRP 120 Query: 121 LDLMQPYRLEMGTKLANPGGKDLYAFWGNEITEALNDELAAQKTPVLVNLASEEYFKVVK 180 LD MQPYRLEMGT+LANPGGKDLYAFWG+++T ALN L PVLVNLASEEYFKVV+ Sbjct: 121 LDRMQPYRLEMGTRLANPGGKDLYAFWGDDVTLALNALLKPDDAPVLVNLASEEYFKVVR 180 Query: 181 PKLLKAQVISPVFEDWKGGKYKIISFYAKRARGLMARYAAEKNISQPEKLKAFDVEGYAF 240 PK+LKA++++PVFEDWKGG+YKIISFYAKRARGLMARYA E+ I+ P KLK FD EGYAF Sbjct: 181 PKVLKARIVTPVFEDWKGGRYKIISFYAKRARGLMARYAIERRITDPRKLKHFDAEGYAF 240 Query: 241 APEASSASSWVFRRK 255 A +AS WVFRRK Sbjct: 241 AVDASDDERWVFRRK 255 >ref|YP_001100209.1| hypothetical protein HEAR1935 [Herminiimonas arsenicoxydans] emb|CAL62085.1| Conserved hypothetical protein [Herminiimonas arsenicoxydans] Length = 281 Score = 374 bits (960), Expect = e-102, Method: Composition-based stats. Identities = 182/256 (71%), Positives = 217/256 (84%) Query: 1 MLIVLSPAKSLDYDTPPTTDLHTTPAFVPRSAELIEVLKTKSPAEIGSLMGISDQLSVLN 60 MLIVLSPAK+LDY+TP T++ T P F+ RSAELIE+L+ +P IGSLM ISDQL+ LN Sbjct: 24 MLIVLSPAKTLDYETPANTEISTKPDFIKRSAELIEILREFAPDRIGSLMRISDQLATLN 83 Query: 61 VNRYASWSRKFTTKNAKQAVLAFNGDVYEGLDAGSLKAKQLDYLQNHVRILSGLYGMLRP 120 NRYA+WS KFT KN+KQA+LAFNGDVYEGLDA SL AKQL Y Q+H+RILSGLYG+LRP Sbjct: 84 ANRYAAWSPKFTLKNSKQAMLAFNGDVYEGLDAASLNAKQLAYAQSHIRILSGLYGVLRP 143 Query: 121 LDLMQPYRLEMGTKLANPGGKDLYAFWGNEITEALNDELAAQKTPVLVNLASEEYFKVVK 180 LDLMQPYRLEMGT+LANP GKDLYAFWGN +T+ LN +A Q++ LVNLASEEYFKVVK Sbjct: 144 LDLMQPYRLEMGTRLANPAGKDLYAFWGNTVTDKLNQRIAEQQSEALVNLASEEYFKVVK 203 Query: 181 PKLLKAQVISPVFEDWKGGKYKIISFYAKRARGLMARYAAEKNISQPEKLKAFDVEGYAF 240 P LLKA VI+PVF+DWK G+YKIISFYAKRARGLMARYAA + +++P LK+FDV+GY F Sbjct: 204 PTLLKAPVITPVFQDWKNGQYKIISFYAKRARGLMARYAATEGVTRPTDLKSFDVDGYEF 263 Query: 241 APEASSASSWVFRRKL 256 AS+ ++W+FRRK+ Sbjct: 264 DAGASNETTWMFRRKV 279