BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3514.p (372 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776399.1| ribosomal large subunit pseudouridine syntha... 580 e-163 ref|YP_004752427.1| ribosomal large subunit pseudouridine syntha... 436 e-120 ref|YP_001353083.1| ribosomal large subunit pseudouridine syntha... 419 e-115 ref|YP_001100200.1| pseudouridine synthase [Herminiimonas arseni... 406 e-111 ref|ZP_08273174.1| Ribosomal large subunit pseudouridine synthas... 402 e-110 >ref|YP_003776399.1| ribosomal large subunit pseudouridine synthase D [Herbaspirillum seropedicae SmR1] gb|ADJ64491.1| ribosomal large subunit pseudouridine synthase D protein [Herbaspirillum seropedicae SmR1] Length = 370 Score = 580 bits (1494), Expect = e-163, Method: Composition-based stats. Identities = 316/362 (87%), Positives = 333/362 (91%), Gaps = 1/362 (0%) Query: 1 MSRKKPLPITNGDEPVKTDLPLEDDFDDGEQAGDESVSGLEPLSFRLDDEVIGQRLDKVL 60 MSRKKPL ITNGD PV TDLP + D D GDE GLEPL+ RLDDEVIGQRLDKVL Sbjct: 1 MSRKKPLQITNGDTPVHTDLP-QADDFDDAHDGDEIGPGLEPLTLRLDDEVIGQRLDKVL 59 Query: 61 SGLMPEFSRSRIQQWIEDGHVTVDGAPAKGKMTMLGDELVEVAPQSVPADQPYAPEAMAL 120 SGL+PEFSRSRIQQWIEDGHVTV+GAPAK KMTMLGDELVEVAPQSVP+DQPY PE MAL Sbjct: 60 SGLLPEFSRSRIQQWIEDGHVTVNGAPAKAKMTMLGDELVEVAPQSVPSDQPYGPEPMAL 119 Query: 121 DILHEDKSIIILNKPAGLVVHPAAGNWSGTLLNGLLHHCPGLANVPRAGIVHRLDKETSG 180 DILHEDK++I+LNKPAGLVVHPAAGNWSGTLLNGLLHHCP LA VPRAGIVHRLDK+TSG Sbjct: 120 DILHEDKALIVLNKPAGLVVHPAAGNWSGTLLNGLLHHCPALAKVPRAGIVHRLDKDTSG 179 Query: 181 LMVVAKTLAAQTDLVRQLQARSMKRQYLALVWGLPQLSGTINAPMARHPRDRIKMAVSQS 240 +MVVAKTLAAQTDLVRQLQARSMKRQYLALVWGLPQLSGTINAPMARHPRDRIKMAVSQS Sbjct: 180 IMVVAKTLAAQTDLVRQLQARSMKRQYLALVWGLPQLSGTINAPMARHPRDRIKMAVSQS 239 Query: 241 MRAKPAVTHYRRLATGEIDRKPVSLVHCRLETGRTHQIRVHLQSLGFALVGDALYGKQHL 300 MRAKPAVTHYRRLATGEIDRKPVSL+HCRLETGRTHQIRVHLQSLGF LVGDALYGK HL Sbjct: 240 MRAKPAVTHYRRLATGEIDRKPVSLIHCRLETGRTHQIRVHLQSLGFPLVGDALYGKHHL 299 Query: 301 ASVFPRQALLAGRLGLVHPTSGKFRQWAAPLPADIEALLKSASIDPALAVIPEMSEEADP 360 SVFPRQALLAGRLGL+HP++GKFRQWAAPLP DI ALL+ A IDPALAVIPEMS+E D Sbjct: 300 VSVFPRQALLAGRLGLLHPSTGKFRQWAAPLPEDIVALLQRAGIDPALAVIPEMSDEPDE 359 Query: 361 VL 362 V+ Sbjct: 360 VI 361 >ref|YP_004752427.1| ribosomal large subunit pseudouridine synthase D [Collimonas fungivorans Ter331] gb|AEK61604.1| Ribosomal large subunit pseudouridine synthase D [Collimonas fungivorans Ter331] Length = 350 Score = 436 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 218/303 (71%), Positives = 255/303 (84%) Query: 42 PLSFRLDDEVIGQRLDKVLSGLMPEFSRSRIQQWIEDGHVTVDGAPAKGKMTMLGDELVE 101 P+ +L +V G RLDKV+S L+P++SRSRIQQWIE GHVTVDG P KMT GDE V Sbjct: 44 PIVLQLTPDVCGTRLDKVVSTLVPQYSRSRIQQWIEAGHVTVDGKPGTTKMTTYGDETVV 103 Query: 102 VAPQSVPADQPYAPEAMALDILHEDKSIIILNKPAGLVVHPAAGNWSGTLLNGLLHHCPG 161 V PQ P ++ + PE MALD+++ED +II++NKPAGLVVHPAAGNWSGTLLNGLL P Sbjct: 104 VLPQPAPDEKAFTPEDMALDVVYEDAAIIVINKPAGLVVHPAAGNWSGTLLNGLLFRWPA 163 Query: 162 LANVPRAGIVHRLDKETSGLMVVAKTLAAQTDLVRQLQARSMKRQYLALVWGLPQLSGTI 221 LA VPRAGIVHRLDK+TSGLMVVAKTL AQTDLVRQLQAR++KRQYLALVWG PQL+GT+ Sbjct: 164 LAGVPRAGIVHRLDKDTSGLMVVAKTLEAQTDLVRQLQARTVKRQYLALVWGTPQLNGTV 223 Query: 222 NAPMARHPRDRIKMAVSQSMRAKPAVTHYRRLATGEIDRKPVSLVHCRLETGRTHQIRVH 281 ++PMARHPRDRIKMAVS+S+ AKPA+THY+RLATG ++R+PVSL+ CRLETGRTHQIRVH Sbjct: 224 DSPMARHPRDRIKMAVSESLIAKPAITHYQRLATGLLERRPVSLMSCRLETGRTHQIRVH 283 Query: 282 LQSLGFALVGDALYGKQHLASVFPRQALLAGRLGLVHPTSGKFRQWAAPLPADIEALLKS 341 +QSLGF+LVGDALYGKQHL FPRQAL A RLGL+HP+SGK +W APLP D ALL Sbjct: 284 MQSLGFSLVGDALYGKQHLMPAFPRQALQASRLGLIHPSSGKACEWYAPLPEDFAALLVR 343 Query: 342 ASI 344 A + Sbjct: 344 AGM 346 >ref|YP_001353083.1| ribosomal large subunit pseudouridine synthase D [Janthinobacterium sp. Marseille] gb|ABR89748.1| ribosomal large subunit pseudouridine synthase D [Janthinobacterium sp. Marseille] Length = 342 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 210/332 (63%), Positives = 260/332 (78%), Gaps = 1/332 (0%) Query: 13 DEPVKTDLPLEDDFDDGEQAGDESVSGLEPLSFRLDDEVIGQRLDKVLSGLMPEFSRSRI 72 D P+ E D + G GD+ L P+ L+ +V G RLDKVLS L+P++SRSR+ Sbjct: 9 DTPILNKTMPESDLE-GVDDGDDLALELPPIELDLNPDVCGVRLDKVLSTLVPQYSRSRL 67 Query: 73 QQWIEDGHVTVDGAPAKGKMTMLGDELVEVAPQSVPADQPYAPEAMALDILHEDKSIIIL 132 QQWI+ GHV+VDG A+ KMT+ GDE V + PQ P D+ + PEAM L I+HED ++++ Sbjct: 68 QQWIDGGHVSVDGEVARAKMTVYGDEKVVIYPQPAPEDEAFKPEAMDLAIVHEDAEMLVI 127 Query: 133 NKPAGLVVHPAAGNWSGTLLNGLLHHCPGLANVPRAGIVHRLDKETSGLMVVAKTLAAQT 192 NKPAGLVVHPAAGNWSGTLLNGLLH+ P ++ VPRAGIVHRLDK+TSGLMVVAKTL A T Sbjct: 128 NKPAGLVVHPAAGNWSGTLLNGLLHYLPSISGVPRAGIVHRLDKDTSGLMVVAKTLIAHT 187 Query: 193 DLVRQLQARSMKRQYLALVWGLPQLSGTINAPMARHPRDRIKMAVSQSMRAKPAVTHYRR 252 DLVRQLQAR++KR+YLALVWG P ++G I+A + RH RDRIKMAVS+++ AKPAVTH++R Sbjct: 188 DLVRQLQARTVKREYLALVWGTPNITGKIDASIGRHARDRIKMAVSENLTAKPAVTHFQR 247 Query: 253 LATGEIDRKPVSLVHCRLETGRTHQIRVHLQSLGFALVGDALYGKQHLASVFPRQALLAG 312 LATG +D +PVSL+ CRLETGRTHQIRVH+QS+GFALVGD LYGKQHL +VFPRQAL A Sbjct: 248 LATGMLDGRPVSLMLCRLETGRTHQIRVHMQSIGFALVGDGLYGKQHLTTVFPRQALHAR 307 Query: 313 RLGLVHPTSGKFRQWAAPLPADIEALLKSASI 344 RLGL+HP SG+ +W++ LP D L+ A I Sbjct: 308 RLGLIHPVSGEAVEWSSELPQDFAELIARAGI 339 >ref|YP_001100200.1| pseudouridine synthase [Herminiimonas arsenicoxydans] emb|CAL62076.1| Ribosomal large subunit pseudouridine synthase D (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) [Herminiimonas arsenicoxydans] Length = 318 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 200/312 (64%), Positives = 250/312 (80%) Query: 33 GDESVSGLEPLSFRLDDEVIGQRLDKVLSGLMPEFSRSRIQQWIEDGHVTVDGAPAKGKM 92 D + + P+ L V G RLDKVLS L+P++SRSR+QQWI+ GHV+VDG A+ KM Sbjct: 4 ADGDLLDVPPIELDLTPAVCGVRLDKVLSTLVPQYSRSRLQQWIDAGHVSVDGEIARAKM 63 Query: 93 TMLGDELVEVAPQSVPADQPYAPEAMALDILHEDKSIIILNKPAGLVVHPAAGNWSGTLL 152 T+ GDE V + PQ P D+ + PEAM L+I +ED +I++++KPAGLVVHPAAGNWSGTLL Sbjct: 64 TVYGDEKVVIYPQPAPEDEAFKPEAMDLNIAYEDAAILVIDKPAGLVVHPAAGNWSGTLL 123 Query: 153 NGLLHHCPGLANVPRAGIVHRLDKETSGLMVVAKTLAAQTDLVRQLQARSMKRQYLALVW 212 NGLLH+ P +A VPRAGIVHRLDK+TSGLMVVAKTL A TDLVRQLQAR++KR+YLALVW Sbjct: 124 NGLLHYLPAIAGVPRAGIVHRLDKDTSGLMVVAKTLVAHTDLVRQLQARTVKREYLALVW 183 Query: 213 GLPQLSGTINAPMARHPRDRIKMAVSQSMRAKPAVTHYRRLATGEIDRKPVSLVHCRLET 272 G P +SG ++ + RH RDR+KMAVS+++ AKPA+TH++RLATG +D +PVSL+ C+LET Sbjct: 184 GTPNVSGKVDTSIGRHSRDRVKMAVSENLTAKPALTHFQRLATGMLDGRPVSLMMCQLET 243 Query: 273 GRTHQIRVHLQSLGFALVGDALYGKQHLASVFPRQALLAGRLGLVHPTSGKFRQWAAPLP 332 GRTHQIRVH+QS+GFALVGDALYGKQHL +VFPRQAL A RLGLVHP SG +W++ LP Sbjct: 244 GRTHQIRVHMQSIGFALVGDALYGKQHLTTVFPRQALHARRLGLVHPVSGAAVEWSSELP 303 Query: 333 ADIEALLKSASI 344 D L+ + I Sbjct: 304 QDFADLIARSGI 315 >ref|ZP_08273174.1| Ribosomal large subunit pseudouridine synthase D [Oxalobacteraceae bacterium IMCC9480] gb|EGF33364.1| Ribosomal large subunit pseudouridine synthase D [Oxalobacteraceae bacterium IMCC9480] Length = 355 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 206/326 (63%), Positives = 253/326 (77%), Gaps = 2/326 (0%) Query: 19 DLPLEDDFDDGEQAGDESVSGLEPLSFRLDDEVIGQRLDKVLSGLMPEFSRSRIQQWIED 78 +LP E D D+ E+ + + P+ L G RLDKV++ L+P+FSRSR+QQWI+D Sbjct: 16 NLP-ELDIDEQEEYTG-GLPDMPPIELDLTPGDCGDRLDKVVARLVPQFSRSRMQQWIDD 73 Query: 79 GHVTVDGAPAKGKMTMLGDELVEVAPQSVPADQPYAPEAMALDILHEDKSIIILNKPAGL 138 G VTVDG + +MT+ GDE + V PQ+ P D +APE MAL+I++ED++II++NKPAGL Sbjct: 74 GFVTVDGKVGRTRMTVYGDEHIVVLPQAAPEDTAFAPEEMALNIVYEDEAIIVVNKPAGL 133 Query: 139 VVHPAAGNWSGTLLNGLLHHCPGLANVPRAGIVHRLDKETSGLMVVAKTLAAQTDLVRQL 198 VVHP +GNWSGTLLNGLLH+ P L VPRAGIVHRLDK+TSGLMVVAKTL TDLVRQL Sbjct: 134 VVHPGSGNWSGTLLNGLLHYWPALIGVPRAGIVHRLDKDTSGLMVVAKTLEVHTDLVRQL 193 Query: 199 QARSMKRQYLALVWGLPQLSGTINAPMARHPRDRIKMAVSQSMRAKPAVTHYRRLATGEI 258 AR++KR+Y ALVWG P LSGTI+A M RHPRDRI+MAV +SM AKPA+TH+ R+ +G + Sbjct: 194 AARTVKREYFALVWGTPNLSGTIDASMGRHPRDRIRMAVLESMSAKPAITHFERIESGLL 253 Query: 259 DRKPVSLVHCRLETGRTHQIRVHLQSLGFALVGDALYGKQHLASVFPRQALLAGRLGLVH 318 DR+PVSL+ CRLETGRTHQIRVH+QS+GFALVGD LYGKQHLA F RQAL A RLGLVH Sbjct: 254 DRRPVSLMRCRLETGRTHQIRVHMQSIGFALVGDTLYGKQHLAPAFHRQALQARRLGLVH 313 Query: 319 PTSGKFRQWAAPLPADIEALLKSASI 344 P +G+ +W PL D AL+ SA I Sbjct: 314 PVTGEDVEWRVPLADDFAALIASAEI 339