BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3513.p         (51 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776398.1| hypothetical protein Hsero_3002 [Herbaspiril...    82   2e-14
ref|ZP_04577300.1| conserved hypothetical protein [Oxalobacter f...    55   2e-06

>ref|YP_003776398.1| hypothetical protein Hsero_3002 [Herbaspirillum seropedicae SmR1]
 gb|ADJ64490.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 248

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/48 (85%), Positives = 44/48 (91%)

Query: 1  MELLIPDWAAPANIGALTTLRAGGYSPAPYDDGQSGGGLNLGTHVDDD 48
          MELL+PDW APANIGALTTLRAGG+SPAPYDDGQ G GLNLG HV+DD
Sbjct: 1  MELLLPDWTAPANIGALTTLRAGGFSPAPYDDGQGGPGLNLGLHVEDD 48


>ref|ZP_04577300.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
 gb|EEO28262.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
          Length = 261

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/50 (56%), Positives = 34/50 (68%), Gaps = 1/50 (2%)

Query: 1  MELLIPDWAAPANIGALTTLRAGGYSPAPYDDGQSG-GGLNLGTHVDDDP 49
          M  +IP+W AP  + A +T+RAGG+S APY     G GGLNLG HV DDP
Sbjct: 1  MNPIIPEWPAPDCVKAFSTVRAGGFSMAPYHGNADGTGGLNLGLHVGDDP 50