BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3511.p (261 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776396.1| permease [Herbaspirillum seropedicae SmR1] >... 283 2e-74 ref|YP_004753795.1| membrane protein [Collimonas fungivorans Ter... 211 1e-52 ref|YP_002499451.1| hypothetical protein Mnod_4272 [Methylobacte... 204 1e-50 ref|YP_002496263.1| hypothetical protein Mnod_0947 [Methylobacte... 201 9e-50 ref|YP_001641792.1| hypothetical protein Mext_4352 [Methylobacte... 196 4e-48 >ref|YP_003776396.1| permease [Herbaspirillum seropedicae SmR1] gb|ADJ64488.1| permease protein [Herbaspirillum seropedicae SmR1] Length = 260 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 188/240 (78%), Positives = 211/240 (87%) Query: 1 MPSLLSLVDMNATMLAMSLAVFLLAGFVKGVIGLGLPTVAVGLLSLVMPPVQAAALLILP 60 M S LS +DM+AT+L SL VF+LAGFVKG IGLGLPTVAVGLLSL+MPPVQAA LLI+P Sbjct: 1 MSSFLSSIDMSATVLPASLPVFMLAGFVKGSIGLGLPTVAVGLLSLMMPPVQAAPLLIVP 60 Query: 61 SMVTNGWQLVTGGAFLMLAKRLWTLLAGVVTGTLAGAGFMRGDGGRHAIVVLGVALMLYA 120 SMVTNGWQL+TGGA L +RLWTLLAG+V GTLAG FM DGGR AI+VLG+AL+LYA Sbjct: 61 SMVTNGWQLLTGGALRALVRRLWTLLAGIVLGTLAGGSFMNADGGRRAIIVLGLALVLYA 120 Query: 121 LAGLAAWTPTVPPQRERWWSPVIGLVTGLVTAATGVFVIPVVPYLQALGLPRDQLIQALG 180 LAGLA+WTP+V P +E+WWSP +GL TGLVTAATGVFVIP VPYLQALGLPR+QLIQALG Sbjct: 121 LAGLASWTPSVSPAQEQWWSPAVGLATGLVTAATGVFVIPAVPYLQALGLPREQLIQALG 180 Query: 181 LSFTVSTLALAVNLGQGGAFSAGVGWASLIVLVPALLGMAIGTRVRTWVRPATFRRCFFI 240 LSFTVSTLALAVNLGQGGAFS GVGWASL++L+PALLGM+IG RVR V+ TFRRCFFI Sbjct: 181 LSFTVSTLALAVNLGQGGAFSGGVGWASLVLLLPALLGMSIGARVRGRVQAVTFRRCFFI 240 >ref|YP_004753795.1| membrane protein [Collimonas fungivorans Ter331] gb|AEK62972.1| membrane protein, putative [Collimonas fungivorans Ter331] Length = 268 Score = 211 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 138/235 (58%), Positives = 172/235 (73%) Query: 15 LAMSLAVFLLAGFVKGVIGLGLPTVAVGLLSLVMPPVQAAALLILPSMVTNGWQLVTGGA 74 L+ L F +AG VKGV G+GLPT+A+GLL + MPPV AA LLILPS VTN WQL+ G Sbjct: 28 LSAILLTFFIAGTVKGVTGMGLPTIAMGLLGITMPPVAAATLLILPSFVTNLWQLLAGPG 87 Query: 75 FLMLAKRLWTLLAGVVTGTLAGAGFMRGDGGRHAIVVLGVALMLYALAGLAAWTPTVPPQ 134 FL LA+RLWT++AG+ GT+AGA M D G + LGV L++YAL GLAA +VP + Sbjct: 88 FLALARRLWTMMAGIAVGTIAGAWLMTNDSGGWTAIALGVVLVVYALFGLAARQLSVPTR 147 Query: 135 RERWWSPVIGLVTGLVTAATGVFVIPVVPYLQALGLPRDQLIQALGLSFTVSTLALAVNL 194 ER SP++GLVTGL+T TGVFVIP VPY+QALGL ++ L+QALGLSFTVST+ALA+ L Sbjct: 148 AERPASPLVGLVTGLITGGTGVFVIPAVPYIQALGLDKEDLVQALGLSFTVSTIALAIGL 207 Query: 195 GQGGAFSAGVGWASLIVLVPALLGMAIGTRVRTWVRPATFRRCFFIGLLLLGVHL 249 + GAF G S + ++PALLGM +G VR V PATFRR FFI L++LG+ L Sbjct: 208 QRQGAFELGDIGTSSLAVLPALLGMWLGQHVRRRVSPATFRRWFFICLIVLGLQL 262 >ref|YP_002499451.1| hypothetical protein Mnod_4272 [Methylobacterium nodulans ORS 2060] gb|ACL59148.1| protein of unknown function DUF81 [Methylobacterium nodulans ORS 2060] Length = 251 Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 150/237 (63%), Positives = 172/237 (72%), Gaps = 1/237 (0%) Query: 15 LAMSLAVFLLAGFVKGVIGLGLPTVAVGLLSLVMPPVQAAALLILPSMVTNGWQLVTGGA 74 +A++ FLLAGFVKGVIGLGLPTVA+GLLSLVM P QAAALLI+PS VTN WQL G Sbjct: 10 IAITALTFLLAGFVKGVIGLGLPTVAMGLLSLVMAPAQAAALLIVPSFVTNVWQLAAGPR 69 Query: 75 FLMLAKRLWTLLAGVVTGTLAGAGFMRGDGGRHAIVVLGVALMLYALAGLAAWTPTVPPQ 134 F LA RLW ++ GVV GTLAGAGF++G A + LG+ALM YA+ GL A +PP+ Sbjct: 70 FGTLAHRLWPMMVGVVVGTLAGAGFLQGSHAGQAAIALGLALMAYAVLGLTAVRFALPPE 129 Query: 135 RE-RWWSPVIGLVTGLVTAATGVFVIPVVPYLQALGLPRDQLIQALGLSFTVSTLALAVN 193 + W P+IG +TGLVTAATGVFVIP VPYL ALGL +D+LIQALGLSFTVSTLALA Sbjct: 130 AQGGWMGPLIGALTGLVTAATGVFVIPAVPYLGALGLAKDELIQALGLSFTVSTLALAAV 189 Query: 194 LGQGGAFSAGVGWASLIVLVPALLGMAIGTRVRTWVRPATFRRCFFIGLLLLGVHLA 250 L G F G AS L PAL+GMA+G VR V FRRCFF+GLL LG HLA Sbjct: 190 LAGSGVFEPGTAGASAFALGPALVGMAMGGWVRGRVSEPVFRRCFFLGLLALGTHLA 246 >ref|YP_002496263.1| hypothetical protein Mnod_0947 [Methylobacterium nodulans ORS 2060] gb|ACL55960.1| protein of unknown function DUF81 [Methylobacterium nodulans ORS 2060] Length = 250 Score = 201 bits (511), Expect = 9e-50, Method: Composition-based stats. Identities = 146/225 (64%), Positives = 169/225 (75%) Query: 15 LAMSLAVFLLAGFVKGVIGLGLPTVAVGLLSLVMPPVQAAALLILPSMVTNGWQLVTGGA 74 +A++ FLLAGFVKGVIGLGLPTVA+GLLS VM P QAA+LLI+PS VTN WQL TG Sbjct: 10 IAVATLTFLLAGFVKGVIGLGLPTVAMGLLSTVMAPAQAASLLIVPSFVTNVWQLATGPR 69 Query: 75 FLMLAKRLWTLLAGVVTGTLAGAGFMRGDGGRHAIVVLGVALMLYALAGLAAWTPTVPPQ 134 F LA+RLW ++AGVV GTLAG GFM+G A + LGVALM YA+ GL A VPP+ Sbjct: 70 FGALARRLWPMMAGVVVGTLAGTGFMQGSHAGQAAIALGVALMAYAVLGLTAMRFAVPPR 129 Query: 135 RERWWSPVIGLVTGLVTAATGVFVIPVVPYLQALGLPRDQLIQALGLSFTVSTLALAVNL 194 ERW PVIG VTGL+TAATGVFVIP VPYL ALGLP+D+LIQALGLSFTVST+ALA L Sbjct: 130 AERWLGPVIGAVTGLMTAATGVFVIPAVPYLGALGLPKDELIQALGLSFTVSTVALAAAL 189 Query: 195 GQGGAFSAGVGWASLIVLVPALLGMAIGTRVRTWVRPATFRRCFF 239 GG+F G AS + L PAL+GM++G +R V FRRCFF Sbjct: 190 AGGGSFETGTAGASALALAPALIGMSVGGWMRGRVSERMFRRCFF 234 >ref|YP_001641792.1| hypothetical protein Mext_4352 [Methylobacterium extorquens PA1] gb|ABY32721.1| protein of unknown function DUF81 [Methylobacterium extorquens PA1] Length = 250 Score = 196 bits (497), Expect = 4e-48, Method: Composition-based stats. Identities = 139/230 (60%), Positives = 162/230 (70%) Query: 10 MNATMLAMSLAVFLLAGFVKGVIGLGLPTVAVGLLSLVMPPVQAAALLILPSMVTNGWQL 69 M+ LA++ + FLLAGFVKG++GLGLP VA+GLLSLVM PVQAAALL++P+ VTN WQL Sbjct: 5 MDPLPLAVAASAFLLAGFVKGMVGLGLPPVAMGLLSLVMAPVQAAALLVVPAFVTNVWQL 64 Query: 70 VTGGAFLMLAKRLWTLLAGVVTGTLAGAGFMRGDGGRHAIVVLGVALMLYALAGLAAWTP 129 G F L +RLW +LA V GTL AG + G+ G A V LG+AL+ YA+ GLAA Sbjct: 65 AAGPRFGTLLRRLWPMLAASVVGTLVAAGILHGNYGAEATVFLGLALIAYAVIGLAALRL 124 Query: 130 TVPPQRERWWSPVIGLVTGLVTAATGVFVIPVVPYLQALGLPRDQLIQALGLSFTVSTLA 189 VPP ERW P+IG TGLVTAAT V P PYL ALGL +D LIQALGLSFTVST+A Sbjct: 125 HVPPDMERWLGPLIGAATGLVTAATAVSSFPSAPYLGALGLTKDDLIQALGLSFTVSTVA 184 Query: 190 LAVNLGQGGAFSAGVGWASLIVLVPALLGMAIGTRVRTWVRPATFRRCFF 239 LA+ L GGA S V S+I LVPALLGMA+G VR V FRRCFF Sbjct: 185 LAIALTGGGALSLSVAGTSIIALVPALLGMALGGWVRGRVSERVFRRCFF 234