BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3509.p (616 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776395.1| poly(3-hydroxyalkanoate) synthetase [Herbasp... 1059 0.0 ref|YP_004752430.1| polyhydroxyalkanoic acid synthase [Collimona... 757 0.0 ref|ZP_08273177.1| Polyhydroxyalkanoic acid synthase [Oxalobacte... 693 0.0 ref|YP_001353086.1| poly-beta-hydroxybutyrate polymerase [Janthi... 682 0.0 gb|AAB06755.1| PHB polymerase [Zoogloea ramigera] 671 0.0 >ref|YP_003776395.1| poly(3-hydroxyalkanoate) synthetase [Herbaspirillum seropedicae SmR1] gb|ADJ64487.1| poly(3-hydroxyalkanoate) synthetase protein [Herbaspirillum seropedicae SmR1] Length = 588 Score = 1059 bits (2738), Expect = 0.0, Method: Composition-based stats. Identities = 534/595 (89%), Positives = 555/595 (93%), Gaps = 9/595 (1%) Query: 20 MSDPKFWTSLQSQFQSQFEQFKSHLPPMPAMAGMPQMPGFPGGAMPPGAGQIDPTVLLKQ 79 MSDPKFWT+LQSQFQSQF FK PP A PGF PP Q+DPT LKQ Sbjct: 1 MSDPKFWTALQSQFQSQFAPFK---PPAQAF------PGFAAMGAPPAGSQVDPTAFLKQ 51 Query: 80 LGEHGATLDPADLVRLQQDYTREFGELWQSVLAAKPPAITDRRLSAPAWQEHPYFAFQAA 139 L ++GAT+DPA+LVRLQQDYT++FG LWQS+LAAK PAITDRRLSAPAWQEHPYFAFQAA Sbjct: 52 LADNGATIDPAELVRLQQDYTQQFGALWQSMLAAKTPAITDRRLSAPAWQEHPYFAFQAA 111 Query: 140 AYQLNSRFLLALADAVKGTEKVRHKLRFAVQQMIDAMSPANFLATNPVAQQKILETRGES 199 AYQLNSRFLLALADAV+G+EKVRHKLRFAVQQMIDAMSPANFLATNPVAQQKILETRGES Sbjct: 112 AYQLNSRFLLALADAVQGSEKVRHKLRFAVQQMIDAMSPANFLATNPVAQQKILETRGES 171 Query: 200 LTQGIAQLLADLQKGHISQTDETAFEVGRDVGASAGSVIFENELFQLIQYAPLTKTVHAV 259 LT+GIAQLLADLQKGH+SQTDETAFEVGRDVGAS GSVIFENELFQLIQY PLTKTVH V Sbjct: 172 LTKGIAQLLADLQKGHVSQTDETAFEVGRDVGASEGSVIFENELFQLIQYKPLTKTVHEV 231 Query: 260 PLLIVPPCINKFYILDLQPQNSLVRYTVEQGHTVFLISWRNADAAVETATWENYVDDAVV 319 PLLIVPPCINKFYILDLQP NSLVRYTVEQGHTVFLISWRNADAAVETATW+ YVDDAVV Sbjct: 232 PLLIVPPCINKFYILDLQPHNSLVRYTVEQGHTVFLISWRNADAAVETATWDQYVDDAVV 291 Query: 320 RAIHIVQEISKQPQINALGFCVGGTILSCALALLAARGEDPVASLTLLTTFLDFSDTGAI 379 R+IHIVQEISKQPQINALGFCVGGTILSCALALLAARGEDPVASLTLLTTFLDFSDTGAI Sbjct: 292 RSIHIVQEISKQPQINALGFCVGGTILSCALALLAARGEDPVASLTLLTTFLDFSDTGAI 351 Query: 380 DVYIDDMQLALREQMIGKRGLMAGRDFASAFSSLRPNDLLWNYVESNYLKGEKPSAFDLL 439 DVYID+MQLALREQMIG+RGLMAGRDFASAFSSLRPNDLLWNYVESNYLKGEKPSAFDLL Sbjct: 352 DVYIDEMQLALREQMIGQRGLMAGRDFASAFSSLRPNDLLWNYVESNYLKGEKPSAFDLL 411 Query: 440 YWNADSTNLPGPMFCYYLRHMYLENALKEPGRLTVGGEKIDLRKISAPAFIYASRDDHIV 499 YWNADSTNLPGPMFCYYLRHMYLENALKEPGRLTVGGEKIDLRKI+APAFIYASRDDHIV Sbjct: 412 YWNADSTNLPGPMFCYYLRHMYLENALKEPGRLTVGGEKIDLRKINAPAFIYASRDDHIV 471 Query: 500 PWKSAYASLDLINAGKRSNNRFVLGASGHIAGVINPASKNKRNYWVNDKAKAGSDADAWM 559 PWKSAYASL LIN KRSNNRFVLGASGHIAGVINPASKNKRNYW+NDKAKAGS ADAW+ Sbjct: 472 PWKSAYASLGLINTAKRSNNRFVLGASGHIAGVINPASKNKRNYWINDKAKAGSGADAWL 531 Query: 560 AGATEHPGSWWGEWAAFLAKQGGRKVAAPKAPGSTRYKAIEPAPGRYVKAKADQL 614 AGATEHPGSWWG+WAAFLAK GGRKVAAPKA GSTRYK IEPAPGRYVK KADQL Sbjct: 532 AGATEHPGSWWGQWAAFLAKHGGRKVAAPKAAGSTRYKHIEPAPGRYVKVKADQL 586 >ref|YP_004752430.1| polyhydroxyalkanoic acid synthase [Collimonas fungivorans Ter331] gb|AEK61607.1| Polyhydroxyalkanoic acid synthase [Collimonas fungivorans Ter331] Length = 591 Score = 757 bits (1954), Expect = 0.0, Method: Composition-based stats. Identities = 381/592 (64%), Positives = 451/592 (76%), Gaps = 15/592 (2%) Query: 22 DPKFWTSLQSQFQSQFE-QFKSHLPPMPAMAGMPQMPGFPGGAMPPGAGQIDPTVLLKQL 80 DP + L QF F QF L + PG G P Q Sbjct: 14 DPAALSQLSQQFSQAFNPQFLQQLSHIAD-------PGMFLGFNPSAQNQSGAA----GF 62 Query: 81 GEHGATLDPADLVRLQQDYTREFGELWQSVLAAKPPAITDRRLSAPAWQEHPYFAFQAAA 140 GE G +LDPA L +LQ +YT++ LW+ +LAA+ PAI DRR SA AW +P +AF AAA Sbjct: 63 GELGISLDPAVLEKLQAEYTQQLSALWKDMLAARIPAIADRRFSAAAWHGNPVYAFNAAA 122 Query: 141 YQLNSRFLLALADAVKGTEKVRHKLRFAVQQMIDAMSPANFLATNPVAQQKILETRGESL 200 Y LN+ FL A+ +A++ K++ K+ F VQQMIDAM+P+NFLATNP AQQKI+ET GESL Sbjct: 123 YLLNAHFLTAMVEALEAPPKIKRKIGFTVQQMIDAMAPSNFLATNPAAQQKIVETNGESL 182 Query: 201 TQGIAQLLADLQKGHISQTDETAFEVGRDVGASAGSVIFENELFQLIQYAPLTKTVHAVP 260 T+GIAQ++AD+ KG +SQTDE+AFEVG+DV + G+V+FENELFQLIQY PLT V+ P Sbjct: 183 TKGIAQMIADMHKGRVSQTDESAFEVGKDVATTEGAVVFENELFQLIQYTPLTAKVYQRP 242 Query: 261 LLIVPPCINKFYILDLQPQNSLVRYTVEQGHTVFLISWRNADAAVETATWENYVDDAVVR 320 LLIVPPCINKFYILDLQPQNSLVRY VEQGH+VFL+SWRNAD ++ ATW+ YV D +R Sbjct: 243 LLIVPPCINKFYILDLQPQNSLVRYAVEQGHSVFLVSWRNADESLAQATWDQYVVDGAIR 302 Query: 321 AIHIVQEISKQPQINALGFCVGGTILSCALALLAARGEDPVASLTLLTTFLDFSDTGAID 380 AI VQ+IS Q +IN LGFCVGGTILS ALA LAA +P+ASLTLLT FLDFSDTG +D Sbjct: 303 AIQAVQDISGQDKINTLGFCVGGTILSTALAKLAAEKNNPIASLTLLTAFLDFSDTGILD 362 Query: 381 VYIDDMQLALREQMIGKRGLMAGRDFASAFSSLRPNDLLWNYVESNYLKGEKPSAFDLLY 440 VYIDDMQ+ +REQ IG+ GLM GR+F SAFSSLRPNDLLWNYVESNYLKGE+P+ FDLLY Sbjct: 363 VYIDDMQIRMREQAIGQGGLMPGREFGSAFSSLRPNDLLWNYVESNYLKGEQPTPFDLLY 422 Query: 441 WNADSTNLPGPMFCYYLRHMYLENALKEPGRLTVGGEKIDLRKISAPAFIYASRDDHIVP 500 WNADSTNLPGPMFCYYLRHMYL+N+LK+ RLTVGG+KIDL KI APAFIYASR+DHIVP Sbjct: 423 WNADSTNLPGPMFCYYLRHMYLDNSLKD-ARLTVGGQKIDLGKIDAPAFIYASREDHIVP 481 Query: 501 WKSAYASLDLINAGKRSNNRFVLGASGHIAGVINPASKNKRNYWVNDKAKAGSDADAWMA 560 W SAYAS+ L+N K NRFVLGASGHIAGVINP +K KR+YW N A DAD W+A Sbjct: 482 WASAYASVSLLNPKKPKQNRFVLGASGHIAGVINPPAKKKRSYWTNKAVAA--DADTWLA 539 Query: 561 GATEHPGSWWGEWAAFLAKQGGRKVAAPKAPGSTRYKAIEPAPGRYVKAKAD 612 A EHPGSWW EWA FL++ G++VAAP+ G+T+Y IEPAPGRYVK +A+ Sbjct: 540 AAVEHPGSWWTEWAEFLSEHAGKQVAAPRKLGNTKYGIIEPAPGRYVKVRAE 591 >ref|ZP_08273177.1| Polyhydroxyalkanoic acid synthase [Oxalobacteraceae bacterium IMCC9480] gb|EGF33367.1| Polyhydroxyalkanoic acid synthase [Oxalobacteraceae bacterium IMCC9480] Length = 559 Score = 693 bits (1788), Expect = 0.0, Method: Composition-based stats. Identities = 352/595 (59%), Positives = 432/595 (72%), Gaps = 37/595 (6%) Query: 17 LAQMSDPKFWTSLQSQFQSQFEQFKSHLPPMPAMAGMPQMPGFPGGAMPPGAGQIDPTVL 76 +AQ++D W +L Q P PA G P +PG P Sbjct: 1 MAQLADTTQWQNLLKPMQ---------FPSTPA--GQPTIPGLPA--------------- 34 Query: 77 LKQLGEHGATLDPADLVRLQQDYTREFGELWQSVLAAKPPAITDRRLSAPAWQEHPYFAF 136 A DPA + LQ Y +E G LW S ++A AI D+R APAWQ +P +F Sbjct: 35 --------AEFDPAVMASLQAKYMQELGSLWTSTMSAPAAAIADKRFGAPAWQANPMGSF 86 Query: 137 QAAAYQLNSRFLLALADAVKGTEKVRHKLRFAVQQMIDAMSPANFLATNPVAQQKILETR 196 A+AY LN++FL A+ DAVK T KV+ K+RF VQQMIDAMSPANFL TNP AQQ +LET+ Sbjct: 87 NASAYLLNAKFLNAMTDAVKATPKVKEKIRFNVQQMIDAMSPANFLVTNPEAQQLLLETK 146 Query: 197 GESLTQGIAQLLADLQKGHISQTDETAFEVGRDVGASAGSVIFENELFQLIQYAPLTKTV 256 GESL++G+ QLLAD++KG ISQTDETAFEVG++V + G+V+FENELFQL+QY PLTKTV Sbjct: 147 GESLSRGLTQLLADMRKGRISQTDETAFEVGKNVATTEGAVVFENELFQLLQYKPLTKTV 206 Query: 257 HAVPLLIVPPCINKFYILDLQPQNSLVRYTVEQGHTVFLISWRNADAAVETATWENYVDD 316 PLLI+PPCINK+YILDLQP+NSLVRY VEQGHTVFLISWRN DA++ TW++Y++ Sbjct: 207 FERPLLIMPPCINKYYILDLQPENSLVRYAVEQGHTVFLISWRNPDASLAHLTWDDYIEL 266 Query: 317 AVVRAIHIVQEISKQPQINALGFCVGGTILSCALALLAARGEDPVASLTLLTTFLDFSDT 376 AI + Q+IS Q QINALGFCVGGTILS ALALL ARGE PV+SLTLLT FLDF+DT Sbjct: 267 GAFEAIAVTQQISGQEQINALGFCVGGTILSTALALLFARGEKPVSSLTLLTAFLDFTDT 326 Query: 377 GAIDVYIDDMQLALREQMIGKRGLMAGRDFASAFSSLRPNDLLWNYVESNYLKGEKPSAF 436 G IDV++D+ + REQ IG+ GLM G++FA FSSLR NDL+W+YV+SNYLKGE P AF Sbjct: 327 GIIDVFVDEEAVVKREQAIGQGGLMEGKEFAQTFSSLRSNDLVWSYVKSNYLKGEAPPAF 386 Query: 437 DLLYWNADSTNLPGPMFCYYLRHMYLENALKEPGRLTVGGEKIDLRKISAPAFIYASRDD 496 DLLYWN+DSTNLPGPMFC+YLR+ YLE+ LK PG+++V GE +D +I+AP F+YASR+D Sbjct: 387 DLLYWNSDSTNLPGPMFCWYLRNTYLEDGLKHPGKVSVLGEPVDFGQIAAPTFLYASRED 446 Query: 497 HIVPWKSAYASLDLINAGKRSNNRFVLGASGHIAGVINPASKNKRNYWVNDKAKAGSDAD 556 HIVPW SAYAS+ L+N N+FV+GASGHIAGVIN +KNKR++W ND K A Sbjct: 447 HIVPWTSAYASMALLNPKHPKLNQFVVGASGHIAGVINAPAKNKRSFWSND--KVAKSAA 504 Query: 557 AWMAGATEHPGSWWGEWAAFLAKQGGRKVAAPKAPGSTRYKAIEPAPGRYVKAKA 611 WM +TE PGSWW WAAFL K G++V P+A G+ + IEPAPGRYVKAK+ Sbjct: 505 EWMEKSTEQPGSWWPSWAAFLQKHAGKQV-KPRAYGNADFPVIEPAPGRYVKAKS 558 >ref|YP_001353086.1| poly-beta-hydroxybutyrate polymerase [Janthinobacterium sp. Marseille] gb|ABR89461.1| poly-beta-hydroxybutyrate polymerase [Janthinobacterium sp. Marseille] Length = 562 Score = 682 bits (1760), Expect = 0.0, Method: Composition-based stats. Identities = 324/528 (61%), Positives = 411/528 (77%), Gaps = 1/528 (0%) Query: 84 GATLDPADLVRLQQDYTREFGELWQSVLAAKPPAITDRRLSAPAWQEHPYFAFQAAAYQL 143 G +DPA +LQ DY ++F LWQ +L+A+ P + D+R + PAWQ AF AAAY L Sbjct: 35 GMGIDPAVATQLQNDYAQQFMTLWQQMLSAQVPPVADKRFADPAWQSSTMHAFNAAAYLL 94 Query: 144 NSRFLLALADAVKGTEKVRHKLRFAVQQMIDAMSPANFLATNPVAQQKILETRGESLTQG 203 N++FL A+ADAV+ K + K+RFA++QM++AMSPANFL +NP AQQK++ET+G SLT G Sbjct: 95 NAKFLAAMADAVQVPPKAKQKIRFAIEQMVNAMSPANFLFSNPEAQQKLIETKGASLTNG 154 Query: 204 IAQLLADLQKGHISQTDETAFEVGRDVGASAGSVIFENELFQLIQYAPLTKTVHAVPLLI 263 + L D+QKG ISQ+DETAFEVGR+V + G+V+FENELFQL+QY PLT TV+ PLL+ Sbjct: 155 LKHLFEDMQKGRISQSDETAFEVGRNVAITEGAVVFENELFQLLQYKPLTPTVYERPLLL 214 Query: 264 VPPCINKFYILDLQPQNSLVRYTVEQGHTVFLISWRNADAAVETATWENYVDDAVVRAIH 323 VPPCINK+YILDLQ NS VRY VEQGHTVFLISWRNADA++ ATW +Y++D V++A+H Sbjct: 215 VPPCINKYYILDLQAHNSFVRYAVEQGHTVFLISWRNADASIAHATWNDYIEDGVLQAMH 274 Query: 324 IVQEISKQPQINALGFCVGGTILSCALALLAARGEDPVASLTLLTTFLDFSDTGAIDVYI 383 + + I++Q +IN LGFCVGGT+L+ ALAL ARGE+P ASLTLLTTFLDFSDTG +DVYI Sbjct: 275 VAKAITRQEKINVLGFCVGGTMLTNALALACARGEEPAASLTLLTTFLDFSDTGILDVYI 334 Query: 384 DDMQLALREQMIGKRGLMAGRDFASAFSSLRPNDLLWNYVESNYLKGEKPSAFDLLYWNA 443 D+ ++ EQ IG GLM G DF +AF+SLR N+L+WNYV SNYLKGE P+ FD+LYWNA Sbjct: 335 DEGKIKEIEQEIGSGGLMKGLDFNAAFASLRSNELIWNYVASNYLKGENPAPFDMLYWNA 394 Query: 444 DSTNLPGPMFCYYLRHMYLENALKEPGRLTVGGEKIDLRKISAPAFIYASRDDHIVPWKS 503 DSTNLPGPM+C+Y+R+ YLEN LK+ G+ +G + IDLR+I AP+FIY SRDDHIVPW S Sbjct: 395 DSTNLPGPMYCWYVRNTYLENNLKQFGKFMLGDKSIDLRQIDAPSFIYGSRDDHIVPWTS 454 Query: 504 AYASLDLINAGKRSNNRFVLGASGHIAGVINPASKNKRNYWVNDKAKAGSDADAWMAGAT 563 AY S++++N K NRFVLGA+GHIAGVINP K++R YW+ND + G DA +W+AGA Sbjct: 455 AYESVNILNRKKPQQNRFVLGAAGHIAGVINPPGKSRRQYWIND-VQDGLDAMSWLAGAQ 513 Query: 564 EHPGSWWGEWAAFLAKQGGRKVAAPKAPGSTRYKAIEPAPGRYVKAKA 611 E GSWW W FLA G++V A G+ ++K IE APGRYVKAKA Sbjct: 514 EVAGSWWPAWTEFLASHAGKQVKARSKLGNAKFKPIEAAPGRYVKAKA 561 >gb|AAB06755.1| PHB polymerase [Zoogloea ramigera] Length = 576 Score = 671 bits (1731), Expect = 0.0, Method: Composition-based stats. Identities = 355/617 (57%), Positives = 433/617 (70%), Gaps = 47/617 (7%) Query: 1 MNKQNPQQPSPDVSAWLAQMSDPKFWTSLQSQFQSQFEQFKSHLPPMPAMAGMPQMPGFP 60 MN +PQ + +AW++Q+ DP SQ+QS F + P P Sbjct: 1 MNLPDPQAIA---NAWMSQVGDP-------SQWQSWFSK-------------APTTEANP 37 Query: 61 GGAMPPGAGQIDPTVLLKQLGEHGATLDPADLVRLQQDYTREFGELWQSVLAAKPPAITD 120 M L + G L P + +L+ DY R+F LWQ LA K PA+ Sbjct: 38 MATM---------------LQDIGVALKPEAMEQLKNDYLRDFTALWQDFLAGKAPAVQR 82 Query: 121 RRLSAPAWQEHPYFAFQAAAYQLNSRFLLALADAVKGTEKVRHKLRFAVQQMIDAMSPAN 180 R S+ AWQ +P AF AA+Y LN++FL A+ +AV + + K+RFAVQQ+IDAMSPAN Sbjct: 83 PRFSSAAWQGNPMSAFNAASYLLNAKFLSAMVEAVDTAPQQKQKIRFAVQQVIDAMSPAN 142 Query: 181 FLATNPVAQQKILETRGESLTQGIAQLLADLQ------KGHISQTDETAFEVGRDVGASA 234 FLATNP AQQK++ET+GESLT+G+ +L D+ GHIS +DE+AFEVGR++ + Sbjct: 143 FLATNPEAQQKLIETKGESLTRGLVNMLGDINMLGDINNGHISLSDESAFEVGRNLAITP 202 Query: 235 GSVIFENELFQLIQYAPLTKTVHAVPLLIVPPCINKFYILDLQPQNSLVRYTVEQGHTVF 294 G+VI+EN LFQLIQY P T TV PLL+VPPCINKFYILDLQP+NSLVRY VEQG+TVF Sbjct: 203 GTVIYENPLFQLIQYTPTTPTVSQRPLLMVPPCINKFYILDLQPENSLVRYAVEQGNTVF 262 Query: 295 LISWRNADAAVETATWENYVDDAVVRAIHIVQEISKQPQINALGFCVGGTILSCALALLA 354 LISW N D ++ TW++YV+ V+ AI IVQ++S Q ++N GFCVGGTI++ ALA+LA Sbjct: 263 LISWSNPDKSLAGTTWDDYVEQGVIEAIRIVQDVSGQDKLNMFGFCVGGTIVATALAVLA 322 Query: 355 ARGEDPVASLTLLTTFLDFSDTGAIDVYIDDMQLALREQMIGKRGLMAGRDFASAFSSLR 414 ARG+ P ASLTLLTTFLDFSDTG + Q+ALREQ + GLM GRD AS FSSLR Sbjct: 323 ARGQHPAASLTLLTTFLDFSDTGC-STSCRETQVALREQQLRDGGLMPGRDLASTFSSLR 381 Query: 415 PNDLLWNYVESNYLKGEKPSAFDLLYWNADSTNLPGPMFCYYLRHMYLENALKEPGRLTV 474 PNDL+WNYV+SNYLKG +P+AFDLL+WN+DSTNLPGPMFC+YLR+ YLEN+LK PG+LTV Sbjct: 382 PNDLVWNYVQSNYLKGNEPAAFDLLFWNSDSTNLPGPMFCWYLRNTYLENSLKVPGKLTV 441 Query: 475 GGEKIDLRKISAPAFIYASRDDHIVPWKSAYASLDLINAGKRSNNRFVLGASGHIAGVIN 534 GEKIDL I APAFIY SR+DHIVPW SAY SLD++N GK NRFVLGASGHIAGVIN Sbjct: 442 AGEKIDLGLIDAPAFIYGSREDHIVPWMSAYGSLDILNQGKPGANRFVLGASGHIAGVIN 501 Query: 535 PASKNKRNYWVNDKAKAGSDADAWMAGATEHPGSWWGEWAAFLAKQGGRKVAAPKAPGST 594 +KNKR YW+ND A DA AW GA E PGSWW +WA FL + GG+KV PG+ Sbjct: 502 SVAKNKRTYWINDGGAA--DAQAWFDGAQEVPGSWWPQWAGFLTQHGGKKVKPKAKPGNA 559 Query: 595 RYKAIEPAPGRYVKAKA 611 RY AIE APGRYVKAK Sbjct: 560 RYTAIEAAPGRYVKAKG 576