BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3507.p         (219 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776393.1| polybetahydroxybutyrate accumulation regulat...   332   2e-89
ref|YP_004752432.1| hypothetical protein CFU_1777 [Collimonas fu...   305   3e-81
ref|ZP_08273179.1| PhbF [Oxalobacteraceae bacterium IMCC9480] >g...   300   8e-80
ref|YP_583511.1| Polyhydroxyalkanoate synthesis transcriptional ...   284   7e-75
ref|YP_001100196.1| putative polyhydroxyalkanoate synthesis repr...   281   4e-74

>ref|YP_003776393.1| polybetahydroxybutyrate accumulation regulatory protein PhbF
           [Herbaspirillum seropedicae SmR1]
 emb|CAM32697.1| Polybetahydroxybutyrate accum [Herbaspirillum seropedicae]
 emb|CAM32702.1| Polybetahydroxybutyrate accumulation regulatory (PhbF) protein
           [Herbaspirillum seropedicae]
 gb|ADJ64485.1| polybetahydroxybutyrate accumulation regulatory (PhbF) protein
           [Herbaspirillum seropedicae SmR1]
          Length = 188

 Score =  332 bits (852), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 177/177 (100%), Positives = 177/177 (100%)

Query: 35  MTTAKNSADRLIKKYPNRRLYDTQTSSYITLTDVKQLVLDNEEFTVVDAKSGDDLTRSIL 94
           MTTAKNSADRLIKKYPNRRLYDTQTSSYITLTDVKQLVLDNEEFTVVDAKSGDDLTRSIL
Sbjct: 1   MTTAKNSADRLIKKYPNRRLYDTQTSSYITLTDVKQLVLDNEEFTVVDAKSGDDLTRSIL 60

Query: 95  LQIILEEESHGVPMFSSGALSQIIRYYGHAMQGMMGNYLEKNIQTFIDIQNKLAENSKGF 154
           LQIILEEESHGVPMFSSGALSQIIRYYGHAMQGMMGNYLEKNIQTFIDIQNKLAENSKGF
Sbjct: 61  LQIILEEESHGVPMFSSGALSQIIRYYGHAMQGMMGNYLEKNIQTFIDIQNKLAENSKGF 120

Query: 155 YEGKPFSPEMWTQFMNVQGPMMQGMMSNYIEQSKNLFIQMQEQMQSQTKNMFGTFPF 211
           YEGKPFSPEMWTQFMNVQGPMMQGMMSNYIEQSKNLFIQMQEQMQSQTKNMFGTFPF
Sbjct: 121 YEGKPFSPEMWTQFMNVQGPMMQGMMSNYIEQSKNLFIQMQEQMQSQTKNMFGTFPF 177


>ref|YP_004752432.1| hypothetical protein CFU_1777 [Collimonas fungivorans Ter331]
 gb|AEK61609.1| hypothetical protein CFU_1777 [Collimonas fungivorans Ter331]
          Length = 187

 Score =  305 bits (781), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 162/184 (88%), Positives = 169/184 (91%)

Query: 35  MTTAKNSADRLIKKYPNRRLYDTQTSSYITLTDVKQLVLDNEEFTVVDAKSGDDLTRSIL 94
           MTT K  ++RLIKKYPNRRLYDTQTSSYITLTDVKQLVLDNEEF V+DAK+ DDLTRSIL
Sbjct: 1   MTTPKKMSERLIKKYPNRRLYDTQTSSYITLTDVKQLVLDNEEFVVLDAKTEDDLTRSIL 60

Query: 95  LQIILEEESHGVPMFSSGALSQIIRYYGHAMQGMMGNYLEKNIQTFIDIQNKLAENSKGF 154
           LQIILEEES+G PMFSS ALSQIIRYYGHAMQGMMG+YLEKNIQ FIDIQNKL ENSKGF
Sbjct: 61  LQIILEEESNGTPMFSSAALSQIIRYYGHAMQGMMGSYLEKNIQAFIDIQNKLTENSKGF 120

Query: 155 YEGKPFSPEMWTQFMNVQGPMMQGMMSNYIEQSKNLFIQMQEQMQSQTKNMFGTFPFVPT 214
           YEGKPFSPEMW QFMNVQGPMMQGMMSNYIEQSK LFIQMQEQMQ+QTKNMFGTFPF P 
Sbjct: 121 YEGKPFSPEMWAQFMNVQGPMMQGMMSNYIEQSKGLFIQMQEQMQNQTKNMFGTFPFAPP 180

Query: 215 DPTK 218
            P K
Sbjct: 181 PPDK 184


>ref|ZP_08273179.1| PhbF [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF33369.1| PhbF [Oxalobacteraceae bacterium IMCC9480]
          Length = 186

 Score =  300 bits (769), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 157/185 (84%), Positives = 167/185 (90%)

Query: 35  MTTAKNSADRLIKKYPNRRLYDTQTSSYITLTDVKQLVLDNEEFTVVDAKSGDDLTRSIL 94
           M + KN A+RLIKKYPNRRLYDTQTSSYITL DVKQLVLDNE F V+DAK+ DDLTR+IL
Sbjct: 1   MNSVKNVAERLIKKYPNRRLYDTQTSSYITLVDVKQLVLDNEVFMVIDAKTNDDLTRAIL 60

Query: 95  LQIILEEESHGVPMFSSGALSQIIRYYGHAMQGMMGNYLEKNIQTFIDIQNKLAENSKGF 154
           LQIILEEES+G PMFSS ALSQIIRYYGHAMQGMMGNYLEKNIQ FIDIQNKL ENSKG 
Sbjct: 61  LQIILEEESNGSPMFSSEALSQIIRYYGHAMQGMMGNYLEKNIQAFIDIQNKLTENSKGM 120

Query: 155 YEGKPFSPEMWTQFMNVQGPMMQGMMSNYIEQSKNLFIQMQEQMQSQTKNMFGTFPFVPT 214
           YEGKPFSPEMWTQFMNVQGPMMQG+ SNYIEQSK+LF+QMQEQMQSQTK+MFG FPF P 
Sbjct: 121 YEGKPFSPEMWTQFMNVQGPMMQGITSNYIEQSKSLFVQMQEQMQSQTKSMFGAFPFNPL 180

Query: 215 DPTKK 219
           DP  K
Sbjct: 181 DPANK 185


>ref|YP_583511.1| Polyhydroxyalkanoate synthesis transcriptional regulator
           [Cupriavidus metallidurans CH34]
 gb|ABF08242.1| transcriptional regulator of Polyhydroxyalkanoate synthesis
           (repressor) [Cupriavidus metallidurans CH34]
          Length = 183

 Score =  284 bits (726), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 150/185 (81%), Positives = 167/185 (90%), Gaps = 2/185 (1%)

Query: 35  MTTAKNSADRLIKKYPNRRLYDTQTSSYITLTDVKQLVLDNEEFTVVDAKSGDDLTRSIL 94
           M T+K  A+RLIKKYPNRRLYDTQTS+YITL DVKQLV+D+EEF VVDAKSG++LTRSIL
Sbjct: 1   MATSKKGAERLIKKYPNRRLYDTQTSTYITLADVKQLVMDSEEFKVVDAKSGEELTRSIL 60

Query: 95  LQIILEEESHGVPMFSSGALSQIIRYYGHAMQGMMGNYLEKNIQTFIDIQNKLAENSKGF 154
           LQIILEEE+ GVPMFSS  LSQIIR+YGHAMQGMMG YLEKNIQ FIDIQ+KLAENSKG 
Sbjct: 61  LQIILEEETGGVPMFSSAMLSQIIRFYGHAMQGMMGTYLEKNIQAFIDIQSKLAENSKGL 120

Query: 155 YEGKPFSPEMWTQFMNVQGPMMQGMMSNYIEQSKNLFIQMQEQMQSQTKNMFGTFPFVPT 214
           Y G+PFSP+MW+QFMN+QGPMMQGMMSNYIEQSKNLF+QMQEQMQ+Q K+MFGTFPF   
Sbjct: 121 YSGEPFSPDMWSQFMNLQGPMMQGMMSNYIEQSKNLFVQMQEQMQNQAKSMFGTFPF--N 178

Query: 215 DPTKK 219
            P KK
Sbjct: 179 QPDKK 183


>ref|YP_001100196.1| putative polyhydroxyalkanoate synthesis repressor PhaR
           [Herminiimonas arsenicoxydans]
 emb|CAL62072.1| Polyhydroxyalkanoate synthesis repressor PhaR [Herminiimonas
           arsenicoxydans]
          Length = 190

 Score =  281 bits (719), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 149/173 (86%), Positives = 162/173 (93%)

Query: 35  MTTAKNSADRLIKKYPNRRLYDTQTSSYITLTDVKQLVLDNEEFTVVDAKSGDDLTRSIL 94
           MT+ K  A+RLIKKYPNRRLYDTQTSSYITL DVKQLVLD+E+F+VVDAK+ +DLTRSIL
Sbjct: 1   MTSTKKMAERLIKKYPNRRLYDTQTSSYITLADVKQLVLDSEQFSVVDAKTDEDLTRSIL 60

Query: 95  LQIILEEESHGVPMFSSGALSQIIRYYGHAMQGMMGNYLEKNIQTFIDIQNKLAENSKGF 154
           LQIILEEE++G PMFSS ALSQIIRYYGHAMQGMMG+YLEKNIQ FIDIQNKL ENSKG 
Sbjct: 61  LQIILEEEANGSPMFSSAALSQIIRYYGHAMQGMMGSYLEKNIQAFIDIQNKLTENSKGL 120

Query: 155 YEGKPFSPEMWTQFMNVQGPMMQGMMSNYIEQSKNLFIQMQEQMQSQTKNMFG 207
           YEGKPFSPEMW QFMNVQGPMMQGMMSNYIEQSKNLF+QMQEQMQ+Q+KNMFG
Sbjct: 121 YEGKPFSPEMWAQFMNVQGPMMQGMMSNYIEQSKNLFVQMQEQMQTQSKNMFG 173