BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3506.p (339 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776388.1| 2-methylthioadenine synthetase [Herbaspirill... 669 0.0 ref|YP_004752433.1| hypothetical protein CFU_1778 [Collimonas fu... 635 e-180 ref|YP_001353088.1| MiaB-like tRNA modifying enzyme [Janthinobac... 619 e-175 ref|YP_001100195.1| ribosomal protein S12 methylthiotransferase ... 601 e-170 ref|YP_002259417.1| 2-methylthioadenine synthetase protein [Rals... 579 e-163 >ref|YP_003776388.1| 2-methylthioadenine synthetase [Herbaspirillum seropedicae SmR1] gb|ADJ64480.1| 2-methylthioadenine synthetase protein [Herbaspirillum seropedicae SmR1] Length = 458 Score = 669 bits (1726), Expect = 0.0, Method: Composition-based stats. Identities = 335/339 (98%), Positives = 339/339 (100%) Query: 1 MQAVHKHLPKPHAPFIDLVPPQGVKLTPKHFAYLKISEGCNHRCSFCIIPSMRGDLVSRP 60 MQAVHKHLPKPHAPFIDLVPPQGVKLTPKHFAYLKISEGCNHRCSFCIIPSMRGDLVSRP Sbjct: 120 MQAVHKHLPKPHAPFIDLVPPQGVKLTPKHFAYLKISEGCNHRCSFCIIPSMRGDLVSRP 179 Query: 61 IADVMLEAENLFKAGVKELLVISQDTSAYGVDVKFRTGFWNGKPIKTHMTQLVGALGELA 120 IADVMLEAENLFKAGVKELLVISQDTSAYGVDVKFRTGFWNGKP+KTHMTQLVGALGELA Sbjct: 180 IADVMLEAENLFKAGVKELLVISQDTSAYGVDVKFRTGFWNGKPVKTHMTQLVGALGELA 239 Query: 121 QQYGAWVRLHYVYPYPHVDQIIPLMAEGKILPYLDVPLQHAHPDVLKRMKRPANGEKNIE 180 QQYGAWVRLHYVYPYPHVDQIIP+MAEGKILPYLDVPLQHAHPDVLKRMKRPANGEKNIE Sbjct: 240 QQYGAWVRLHYVYPYPHVDQIIPMMAEGKILPYLDVPLQHAHPDVLKRMKRPANGEKNIE 299 Query: 181 RIQAWRALCPDITIRSTFIAGFPGETEAEFEYLLDFLKEAEIDRLGCFAYSPVEGATANE 240 RIQAWRA+CPD+TIRSTFIAGFPGETEAEFEYLLDFLKEAEIDRLGCFAYSPVEGATANE Sbjct: 300 RIQAWRAMCPDLTIRSTFIAGFPGETEAEFEYLLDFLKEAEIDRLGCFAYSPVEGATANE 359 Query: 241 IANPVPEEVREERRGRVMQLQEEISKKRLQAKVGKTLRVLIDEVDRNGGTGRTYSDAPEI 300 IANPVPEEVREERRGRVMQLQEEISKKRLQAKVGKTLRVLIDEVDRNGGTGRTYSDAPEI Sbjct: 360 IANPVPEEVREERRGRVMQLQEEISKKRLQAKVGKTLRVLIDEVDRNGGTGRTYSDAPEI 419 Query: 301 DGVVYVKPPFEPHRKLEVGQFVDVRITAADAHDLWGAAE 339 DGVVYVKPPFEPHRKLEVGQFVDVRITAADAHDLWGAAE Sbjct: 420 DGVVYVKPPFEPHRKLEVGQFVDVRITAADAHDLWGAAE 458 >ref|YP_004752433.1| hypothetical protein CFU_1778 [Collimonas fungivorans Ter331] gb|AEK61610.1| hypothetical protein CFU_1778 [Collimonas fungivorans Ter331] Length = 460 Score = 635 bits (1639), Expect = e-180, Method: Composition-based stats. Identities = 309/338 (91%), Positives = 324/338 (95%) Query: 1 MQAVHKHLPKPHAPFIDLVPPQGVKLTPKHFAYLKISEGCNHRCSFCIIPSMRGDLVSRP 60 M AVHKHLPKPHAPF DL+PPQGVKLTPKHFAYLKISEGCNHRCSFCIIPSMRGDLVSRP Sbjct: 123 MFAVHKHLPKPHAPFFDLLPPQGVKLTPKHFAYLKISEGCNHRCSFCIIPSMRGDLVSRP 182 Query: 61 IADVMLEAENLFKAGVKELLVISQDTSAYGVDVKFRTGFWNGKPIKTHMTQLVGALGELA 120 IADVMLEAENLFKAGVKELLVISQDTSAYGVDVKFR GFWNGKP+KTHMTQLV ALGELA Sbjct: 183 IADVMLEAENLFKAGVKELLVISQDTSAYGVDVKFRMGFWNGKPVKTHMTQLVTALGELA 242 Query: 121 QQYGAWVRLHYVYPYPHVDQIIPLMAEGKILPYLDVPLQHAHPDVLKRMKRPANGEKNIE 180 QYGAWVRLHYVYPYPHVD IIPLMAEGK+LPYLDVPLQHAHPDVLKRMKRPA+GEKNIE Sbjct: 243 AQYGAWVRLHYVYPYPHVDHIIPLMAEGKVLPYLDVPLQHAHPDVLKRMKRPASGEKNIE 302 Query: 181 RIQAWRALCPDITIRSTFIAGFPGETEAEFEYLLDFLKEAEIDRLGCFAYSPVEGATANE 240 RIQAWRA+CPD+TIRSTFIAGFPGETEAEFEYLLDFLKEAEIDRLGCFAYSPVEGATAN Sbjct: 303 RIQAWRAMCPDLTIRSTFIAGFPGETEAEFEYLLDFLKEAEIDRLGCFAYSPVEGATANA 362 Query: 241 IANPVPEEVREERRGRVMQLQEEISKKRLQAKVGKTLRVLIDEVDRNGGTGRTYSDAPEI 300 + NPVPEE+REERRGRVMQLQEEISKKRLQAKVGKT+RVLID VDRNGG GR+ +DAPEI Sbjct: 363 LDNPVPEELREERRGRVMQLQEEISKKRLQAKVGKTMRVLIDSVDRNGGVGRSSADAPEI 422 Query: 301 DGVVYVKPPFEPHRKLEVGQFVDVRITAADAHDLWGAA 338 DGVVYVKPP+EPH+KL VG+FVDV ITA+DAHDLW AA Sbjct: 423 DGVVYVKPPYEPHKKLVVGEFVDVTITASDAHDLWAAA 460 >ref|YP_001353088.1| MiaB-like tRNA modifying enzyme [Janthinobacterium sp. Marseille] sp|A6SXU1|RIMO_JANMA RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO gb|ABR89600.1| MiaB-like tRNA modifying enzyme [Janthinobacterium sp. Marseille] Length = 453 Score = 619 bits (1597), Expect = e-175, Method: Composition-based stats. Identities = 301/338 (89%), Positives = 323/338 (95%) Query: 1 MQAVHKHLPKPHAPFIDLVPPQGVKLTPKHFAYLKISEGCNHRCSFCIIPSMRGDLVSRP 60 M AVHKH+PKPHAPFIDLVP QG+KLTPKHFAYLKISEGCNHRCSFCIIPSMRGDLVSRP Sbjct: 116 MDAVHKHMPKPHAPFIDLVPAQGIKLTPKHFAYLKISEGCNHRCSFCIIPSMRGDLVSRP 175 Query: 61 IADVMLEAENLFKAGVKELLVISQDTSAYGVDVKFRTGFWNGKPIKTHMTQLVGALGELA 120 IADVM+EAENLFKAGVKELLVISQDTSAYGVDVKFR GFWNGKP+KTHMTQLV ALGELA Sbjct: 176 IADVMMEAENLFKAGVKELLVISQDTSAYGVDVKFRMGFWNGKPVKTHMTQLVEALGELA 235 Query: 121 QQYGAWVRLHYVYPYPHVDQIIPLMAEGKILPYLDVPLQHAHPDVLKRMKRPANGEKNIE 180 +QYGAWVRLHYVYPYPHVD IIP+MAEGKILPYLDVPLQHAHPDVLKRMKRPA+GEKNIE Sbjct: 236 KQYGAWVRLHYVYPYPHVDAIIPMMAEGKILPYLDVPLQHAHPDVLKRMKRPASGEKNIE 295 Query: 181 RIQAWRALCPDITIRSTFIAGFPGETEAEFEYLLDFLKEAEIDRLGCFAYSPVEGATANE 240 RIQAWRA+CPD+TIRSTFIAGFPGET+AEFEYLLDFLKEAEIDRLGCFAYSPVEGATAN+ Sbjct: 296 RIQAWRAMCPDLTIRSTFIAGFPGETDAEFEYLLDFLKEAEIDRLGCFAYSPVEGATAND 355 Query: 241 IANPVPEEVREERRGRVMQLQEEISKKRLQAKVGKTLRVLIDEVDRNGGTGRTYSDAPEI 300 + N VPEEVREERRGRVM LQEEISKKRLQAKVGKT+RVL+DEV+RNGG R+ +DAPEI Sbjct: 356 LPNAVPEEVREERRGRVMLLQEEISKKRLQAKVGKTMRVLLDEVNRNGGVARSGADAPEI 415 Query: 301 DGVVYVKPPFEPHRKLEVGQFVDVRITAADAHDLWGAA 338 DGVVYVKPP+EPH KL+VG+F+DV+IT ADAHDLW A Sbjct: 416 DGVVYVKPPYEPHLKLKVGEFIDVKITGADAHDLWAEA 453 >ref|YP_001100195.1| ribosomal protein S12 methylthiotransferase [Herminiimonas arsenicoxydans] sp|A4G6D4|RIMO_HERAR RecName: Full=Ribosomal protein S12 methylthiotransferase RimO; Short=S12 MTTase; Short=S12 methylthiotransferase; AltName: Full=Ribosome maturation factor RimO emb|CAL62071.1| Conserved hypothetical protein [Herminiimonas arsenicoxydans] Length = 454 Score = 601 bits (1549), Expect = e-170, Method: Composition-based stats. Identities = 297/339 (87%), Positives = 318/339 (93%), Gaps = 1/339 (0%) Query: 1 MQAVHKHLPKPHAPFIDLVPPQGVKLTPKHFAYLKISEGCNHRCSFCIIPSMRGDLVSRP 60 M AVH H+PKPHAPF+DL+PPQG+KLTPKHFAYLKISEGCNHRCSFCIIPSMRGDLVSRP Sbjct: 116 MDAVHLHMPKPHAPFLDLLPPQGIKLTPKHFAYLKISEGCNHRCSFCIIPSMRGDLVSRP 175 Query: 61 IADVMLEAENLFKAGVKELLVISQDTSAYGVDVKFRTGFWNGKPIKTHMTQLVGALGELA 120 IADVM+EAENLFKAGVKELLVISQDTSAYGVD+KFR GFWNGKP+KTHMTQLV ALGELA Sbjct: 176 IADVMMEAENLFKAGVKELLVISQDTSAYGVDIKFRMGFWNGKPVKTHMTQLVEALGELA 235 Query: 121 QQYGAWVRLHYVYPYPHVDQIIPLMAEGKILPYLDVPLQHAHPDVLKRMKRPANGEKNIE 180 YGAWVRLHYVYPYPHVD IIP+MAEGKILPYLDVPLQHAHPDVLKRMKRPA+GEKNIE Sbjct: 236 APYGAWVRLHYVYPYPHVDAIIPMMAEGKILPYLDVPLQHAHPDVLKRMKRPASGEKNIE 295 Query: 181 RIQAWRALCPDITIRSTFIAGFPGETEAEFEYLLDFLKEAEIDRLGCFAYSPVEGATANE 240 RIQAWRA+CPD+TIRSTFIAGFPGETEAEFEYLLDFLKEAEIDRLGCFAYSPVEGATAN+ Sbjct: 296 RIQAWRAMCPDLTIRSTFIAGFPGETEAEFEYLLDFLKEAEIDRLGCFAYSPVEGATAND 355 Query: 241 IANPVPEEVREERRGRVMQLQEEISKKRLQAKVGKTLRVLIDEVDRNG-GTGRTYSDAPE 299 + N VPEEVREERRGRVM LQEEISKKRLQAKVGKT+RVLIDEV+R G T R+ +DAPE Sbjct: 356 LPNAVPEEVREERRGRVMLLQEEISKKRLQAKVGKTMRVLIDEVNRTGAATARSGADAPE 415 Query: 300 IDGVVYVKPPFEPHRKLEVGQFVDVRITAADAHDLWGAA 338 IDGVVYVK P+EPH K +VG+FVDV+IT ADAHDLW A Sbjct: 416 IDGVVYVKAPYEPHIKYKVGEFVDVKITGADAHDLWAEA 454 >ref|YP_002259417.1| 2-methylthioadenine synthetase protein [Ralstonia solanacearum IPO1609] emb|CAQ61349.1| 2-methylthioadenine synthetase protein [Ralstonia solanacearum IPO1609] Length = 459 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 261/336 (77%), Positives = 305/336 (90%) Query: 1 MQAVHKHLPKPHAPFIDLVPPQGVKLTPKHFAYLKISEGCNHRCSFCIIPSMRGDLVSRP 60 M+AVH HLPKPH PFIDLVPPQG+KLTPKH+AYLKISEGCNHRCSFCIIPSMRGDLVSRP Sbjct: 122 MEAVHTHLPKPHDPFIDLVPPQGIKLTPKHYAYLKISEGCNHRCSFCIIPSMRGDLVSRP 181 Query: 61 IADVMLEAENLFKAGVKELLVISQDTSAYGVDVKFRTGFWNGKPIKTHMTQLVGALGELA 120 +A+VMLEAENL KAGVKELLVISQDTSAYGVDVKFRTGFWNG+P+KT MT+LVGALGELA Sbjct: 182 VAEVMLEAENLLKAGVKELLVISQDTSAYGVDVKFRTGFWNGRPLKTRMTELVGALGELA 241 Query: 121 QQYGAWVRLHYVYPYPHVDQIIPLMAEGKILPYLDVPLQHAHPDVLKRMKRPANGEKNIE 180 QYGAWVRLHYVYPYP VD+++PLMAEGK+LPYLDVPLQHAHPDVLKRMKRPAN EK ++ Sbjct: 242 AQYGAWVRLHYVYPYPSVDEVMPLMAEGKVLPYLDVPLQHAHPDVLKRMKRPANAEKTLD 301 Query: 181 RIQAWRALCPDITIRSTFIAGFPGETEAEFEYLLDFLKEAEIDRLGCFAYSPVEGATANE 240 RI+AWR +CP++TIRSTFIAGFPGETE EF+ LLDF+ EAE+DR+GCFAYSPVEGATAN+ Sbjct: 302 RIRAWREVCPELTIRSTFIAGFPGETEEEFQTLLDFIGEAELDRVGCFAYSPVEGATAND 361 Query: 241 IANPVPEEVREERRGRVMQLQEEISKKRLQAKVGKTLRVLIDEVDRNGGTGRTYSDAPEI 300 + +P+EVREERR R M++ E +S +RLQ KVGKTLRVL+DEV+++GG GR+ +DAPEI Sbjct: 362 LPGALPDEVREERRARFMEVAERVSARRLQRKVGKTLRVLVDEVNQDGGIGRSSADAPEI 421 Query: 301 DGVVYVKPPFEPHRKLEVGQFVDVRITAADAHDLWG 336 DG+VY+ PP +P+++ + G FV V+IT AD HDLWG Sbjct: 422 DGLVYIAPPSKPYKRYKTGDFVSVKITGADGHDLWG 457