BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3505.p         (136 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776387.1| signal peptide protein [Herbaspirillum serop...   207   5e-52
ref|YP_001353089.1| hypothetical protein mma_1399 [Janthinobacte...   105   2e-21
ref|YP_001100194.1| hypothetical protein HEAR1920 [Herminiimonas...   102   2e-20
ref|YP_004752434.1| hypothetical protein CFU_1779 [Collimonas fu...    82   2e-14
ref|ZP_02379471.1| hypothetical protein BuboB_17197 [Burkholderi...    54   1e-05

>ref|YP_003776387.1| signal peptide protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ64479.1| signal peptide protein [Herbaspirillum seropedicae SmR1]
          Length = 143

 Score =  207 bits (527), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 111/125 (88%), Positives = 119/125 (95%)

Query: 12  SASGLMPAWAAASGPAANAPEGSLQQTLMTHALVLRGQIDGRDIQLSLQPKKNEDGLEGR 71
           SA+   P+ AA+SGPAANA EGSLQQTLMTHALVLRGQIDGR+IQLSLQPKKNEDGLEGR
Sbjct: 19  SATAPAPSEAASSGPAANAAEGSLQQTLMTHALVLRGQIDGREIQLSLQPKKNEDGLEGR 78

Query: 72  YFFFGGSPEILVAGEVDGDDLLMEESVNGKDVSGQWEGHRQGQSITGTWSSADGSISKPF 131
           YFFFGGSPEILVAGEVDGDDL+MEESVNGKDVSGQWEG RQGQSITGTWSSADG+++KPF
Sbjct: 79  YFFFGGSPEILVAGEVDGDDLIMEESVNGKDVSGQWEGRRQGQSITGTWSSADGAVTKPF 138

Query: 132 ALQLP 136
           ALQLP
Sbjct: 139 ALQLP 143


>ref|YP_001353089.1| hypothetical protein mma_1399 [Janthinobacterium sp. Marseille]
 gb|ABR91299.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 162

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/115 (44%), Positives = 76/115 (66%), Gaps = 1/115 (0%)

Query: 21  AAASGPAANAPEGSLQQTLMTHALVLRGQIDGRDIQLSLQPKKN-EDGLEGRYFFFGGSP 79
           AA   P      GS    L    +  RG +   ++Q++++PK + ++G+EG YF FG S 
Sbjct: 24  AATDAPKPAVAAGSTVPALFHKPVFFRGVVGDINVQVNIRPKADIDEGIEGEYFIFGNSH 83

Query: 80  EILVAGEVDGDDLLMEESVNGKDVSGQWEGHRQGQSITGTWSSADGSISKPFALQ 134
           +IL+AGE++GD L MEES NG ++SGQW+G  +G S+ G+W SADG+I+KPF L+
Sbjct: 84  KILLAGEIEGDQLFMEESENGTNISGQWDGKLEGDSLVGSWMSADGTITKPFTLK 138


>ref|YP_001100194.1| hypothetical protein HEAR1920 [Herminiimonas arsenicoxydans]
 emb|CAL62070.1| Conserved hypothetical protein [Herminiimonas arsenicoxydans]
          Length = 166

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/98 (48%), Positives = 71/98 (72%), Gaps = 1/98 (1%)

Query: 39  LMTHALVLRGQIDGRDIQLSLQPKKN-EDGLEGRYFFFGGSPEILVAGEVDGDDLLMEES 97
           L    + LRG +   D+Q+ ++PK   ++G+EG YF FG S +IL+AGE++G+ L MEES
Sbjct: 47  LFLKPVTLRGTLGDTDVQVHIRPKAEIDEGIEGEYFIFGNSAKILLAGEIEGEILFMEES 106

Query: 98  VNGKDVSGQWEGHRQGQSITGTWSSADGSISKPFALQL 135
            NG ++SGQW+G  +G  ++GTW SADGS +KPFAL++
Sbjct: 107 ENGTNISGQWDGKLEGDMLSGTWMSADGSFTKPFALKV 144


>ref|YP_004752434.1| hypothetical protein CFU_1779 [Collimonas fungivorans Ter331]
 gb|AEK61611.1| hypothetical protein CFU_1779 [Collimonas fungivorans Ter331]
          Length = 152

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 53/131 (40%), Positives = 76/131 (58%), Gaps = 4/131 (3%)

Query: 4   LLMALVLCSASGLMPAWAAASGPAANAPEGSLQQTLMTHALVLRGQIDGRDIQLSLQPKK 63
           +++AL L  ASG+     A S   A A   +    L    L LRG +    I++ LQ K 
Sbjct: 12  VMLALSLGLASGMA---LAQSDVGAPAVAATAAPNLFAKPLTLRGTLGDAKIEMHLQLKP 68

Query: 64  N-EDGLEGRYFFFGGSPEILVAGEVDGDDLLMEESVNGKDVSGQWEGHRQGQSITGTWSS 122
           +  +G++G Y   G   +IL+AGE +  D++MEESVNGKDVSG+W G   G +  GTWS+
Sbjct: 69  DPTEGIQGTYVVAGQGGKILLAGESENTDVIMEESVNGKDVSGEWAGTLVGDTFRGTWST 128

Query: 123 ADGSISKPFAL 133
            D +++KPF L
Sbjct: 129 TDDAVTKPFVL 139


>ref|ZP_02379471.1| hypothetical protein BuboB_17197 [Burkholderia ubonensis Bu]
          Length = 188

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 40/62 (64%)

Query: 48  GQIDGRDIQLSLQPKKNEDGLEGRYFFFGGSPEILVAGEVDGDDLLMEESVNGKDVSGQW 107
           G + GR I + L PK+NE+G+ G Y F      IL+AG+ DGD L +EES +G +++G W
Sbjct: 69  GTLGGRPIVVRLGPKENEEGVHGEYQFADTGEVILLAGDRDGDTLEIEESNDGTNITGVW 128

Query: 108 EG 109
            G
Sbjct: 129 IG 130