BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3503.p         (105 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776385.1| flagellar transcription activator protein [H...   175   2e-42
ref|YP_001099594.1| transcriptional activator FlhD [Herminiimona...   147   4e-34
ref|YP_001353792.1| transcriptional activator FlhD [Janthinobact...   146   9e-34
ref|ZP_08275669.1| Flagellar transcriptional activator flhD [Oxa...   139   2e-31
ref|YP_546051.1| transcriptional activator FlhD [Methylobacillus...   129   2e-28

>ref|YP_003776385.1| flagellar transcription activator protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ64477.1| flagellar transcription activator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 105

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 104/105 (99%), Positives = 104/105 (99%)

Query: 1   MNTNDMMAEIRDANLSYLMLAQQMIRSDKPTAIFRLGISAEIADLIEGLSNVQIMKLAAT 60
           MNTNDMMAEIRDANLSYLMLAQQMIRSDKPTAIFRLGISAEIADLIEGLSNVQIMKLAAT
Sbjct: 1   MNTNDMMAEIRDANLSYLMLAQQMIRSDKPTAIFRLGISAEIADLIEGLSNVQIMKLAAT 60

Query: 61  NMMLTRFRFDDGAILGMLTNYNKDKSLAQSHAAILMACQPGEQIS 105
           NMMLTRFRFDDGAILGMLTNYNKDKSLAQSHAAILMACQP EQIS
Sbjct: 61  NMMLTRFRFDDGAILGMLTNYNKDKSLAQSHAAILMACQPSEQIS 105


>ref|YP_001099594.1| transcriptional activator FlhD [Herminiimonas arsenicoxydans]
 emb|CAL61467.1| Transcriptional activator FlhD [Herminiimonas arsenicoxydans]
          Length = 105

 Score =  147 bits (372), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 85/105 (80%), Positives = 93/105 (88%)

Query: 1   MNTNDMMAEIRDANLSYLMLAQQMIRSDKPTAIFRLGISAEIADLIEGLSNVQIMKLAAT 60
           M  ND++AEIRDANL YLMLAQQMIR+DKPTAIFRLGIS EIADLIEG++N QI+KLA  
Sbjct: 1   MTNNDIIAEIRDANLGYLMLAQQMIRADKPTAIFRLGISNEIADLIEGMNNAQILKLAGA 60

Query: 61  NMMLTRFRFDDGAILGMLTNYNKDKSLAQSHAAILMACQPGEQIS 105
           NMML RFRFDDGAILGMLTNYNKD+SLA SHAAILMA Q  EQI+
Sbjct: 61  NMMLARFRFDDGAILGMLTNYNKDRSLAHSHAAILMAGQAVEQIA 105


>ref|YP_001353792.1| transcriptional activator FlhD [Janthinobacterium sp. Marseille]
 gb|ABR91323.1| flagellar transcriptional activator FlhD [Janthinobacterium sp.
           Marseille]
          Length = 105

 Score =  146 bits (369), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 86/105 (81%), Positives = 93/105 (88%)

Query: 1   MNTNDMMAEIRDANLSYLMLAQQMIRSDKPTAIFRLGISAEIADLIEGLSNVQIMKLAAT 60
           M TND++AEIRDANL YLMLAQQMIRSDK TAIFRLGIS EIADLIEG++N QI+KLA  
Sbjct: 1   MTTNDIIAEIRDANLGYLMLAQQMIRSDKATAIFRLGISNEIADLIEGMNNAQILKLAGA 60

Query: 61  NMMLTRFRFDDGAILGMLTNYNKDKSLAQSHAAILMACQPGEQIS 105
           NMML RFRFDDGAILGMLTNYNKD+SLA SHAAILMA Q  EQI+
Sbjct: 61  NMMLARFRFDDGAILGMLTNYNKDRSLAHSHAAILMAGQAVEQIA 105


>ref|ZP_08275669.1| Flagellar transcriptional activator flhD [Oxalobacteraceae
           bacterium IMCC9480]
 gb|EGF30858.1| Flagellar transcriptional activator flhD [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 105

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 80/105 (76%), Positives = 95/105 (90%)

Query: 1   MNTNDMMAEIRDANLSYLMLAQQMIRSDKPTAIFRLGISAEIADLIEGLSNVQIMKLAAT 60
           M+TN MMAEIRDANL YLMLAQQMIR+DK TAI+RLG+S+EIADLI GL+N QI+KL+ T
Sbjct: 1   MDTNVMMAEIRDANLGYLMLAQQMIRADKATAIYRLGVSSEIADLIAGLNNAQILKLSGT 60

Query: 61  NMMLTRFRFDDGAILGMLTNYNKDKSLAQSHAAILMACQPGEQIS 105
           +MML RFRF+DGAILGMLTNYNKD++L+QSHAAILMA Q  E+I+
Sbjct: 61  SMMLARFRFEDGAILGMLTNYNKDRALSQSHAAILMASQGVEEIA 105


>ref|YP_546051.1| transcriptional activator FlhD [Methylobacillus flagellatus KT]
 gb|ABE50210.1| flagellar transcriptional activator [Methylobacillus flagellatus
           KT]
          Length = 105

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 76/105 (72%), Positives = 92/105 (87%)

Query: 1   MNTNDMMAEIRDANLSYLMLAQQMIRSDKPTAIFRLGISAEIADLIEGLSNVQIMKLAAT 60
           MN  ++MAEI+DANLSYLMLAQQMIR+DK +AIFRLG+S EIADL+EGLSN Q++KL++ 
Sbjct: 1   MNEQEIMAEIKDANLSYLMLAQQMIRADKASAIFRLGLSQEIADLLEGLSNAQLLKLSSF 60

Query: 61  NMMLTRFRFDDGAILGMLTNYNKDKSLAQSHAAILMACQPGEQIS 105
           NMMLTRFRFDD AILGMLT+Y KD+  AQ+HAAILMA Q  E+I+
Sbjct: 61  NMMLTRFRFDDTAILGMLTSYTKDRMQAQAHAAILMAGQGVEEIA 105