BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3502.p         (257 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776384.1| flagellar transcription activator regulator ...   373   e-101
ref|YP_001099595.1| transcriptional activator FlhC [Herminiimona...   316   2e-84
ref|YP_001353791.1| transcriptional activator FlhC [Janthinobact...   310   1e-82
ref|ZP_08275668.1| Flagellar transcriptional activator flhC [Oxa...   292   3e-77
ref|YP_412001.1| transcriptional activator FlhC [Nitrosospira mu...   273   2e-71

>ref|YP_003776384.1| flagellar transcription activator regulator protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ64476.1| flagellar transcription activator regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 200

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 177/185 (95%), Positives = 182/185 (98%)

Query: 54  MAKKSVVTEAQEIQLAIELINLGARLQLLESETSLSRERLLKLYKELKGVSPPKGMLPFS 113
           MAKKSVVTEAQEIQLAIELINLGARLQLLESETSLSRERLLKLYKELKGVSPPKGMLPFS
Sbjct: 1   MAKKSVVTEAQEIQLAIELINLGARLQLLESETSLSRERLLKLYKELKGVSPPKGMLPFS 60

Query: 114 TDWFITWQPNIHSSLFINIHRYLIEHARISGIEAVMKAYKLYLEQVGYNDAGEPVLSLTR 173
           TDWFITWQPNIHSSLFINIHRYL+EHARISGIEAVMKAYKLYLEQVG NDAGEPVLSLTR
Sbjct: 61  TDWFITWQPNIHSSLFINIHRYLVEHARISGIEAVMKAYKLYLEQVGQNDAGEPVLSLTR 120

Query: 174 AWTLVRFFESKMLMTTPCCKCHGHFVVHRLDLHQDYLCGLCHMPSRAGKTKKAKDAVIMG 233
           AWTLVRFFESKMLMTTPCCKC+GHFVVHRLDLHQDYLCGLCHMPSRAGKTKKAKDAV++G
Sbjct: 121 AWTLVRFFESKMLMTTPCCKCNGHFVVHRLDLHQDYLCGLCHMPSRAGKTKKAKDAVVLG 180

Query: 234 LVDGA 238
           L + A
Sbjct: 181 LAEAA 185


>ref|YP_001099595.1| transcriptional activator FlhC [Herminiimonas arsenicoxydans]
 emb|CAL61468.1| Flagellar transcriptional activator FlhC [Herminiimonas
           arsenicoxydans]
          Length = 182

 Score =  316 bits (810), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 151/174 (86%), Positives = 162/174 (93%)

Query: 54  MAKKSVVTEAQEIQLAIELINLGARLQLLESETSLSRERLLKLYKELKGVSPPKGMLPFS 113
           MAKKSVVTE+QEIQLAIELI LGARLQLLESETSLSRERLLKLYKEL+GVSPPKGMLPFS
Sbjct: 1   MAKKSVVTESQEIQLAIELIKLGARLQLLESETSLSRERLLKLYKELRGVSPPKGMLPFS 60

Query: 114 TDWFITWQPNIHSSLFINIHRYLIEHARISGIEAVMKAYKLYLEQVGYNDAGEPVLSLTR 173
           TDWFITWQPNIHSSLFI IH+YLIEHA+ISGIEAVMKAYKLYLEQV   + GEPVLSLTR
Sbjct: 61  TDWFITWQPNIHSSLFIGIHKYLIEHAQISGIEAVMKAYKLYLEQVDMGEDGEPVLSLTR 120

Query: 174 AWTLVRFFESKMLMTTPCCKCHGHFVVHRLDLHQDYLCGLCHMPSRAGKTKKAK 227
           AWTLVRFF+SKML T  C +C+GHFVVHRLDL+ +Y CGLCHMPSRAGKTK+AK
Sbjct: 121 AWTLVRFFDSKMLETACCSECNGHFVVHRLDLNANYTCGLCHMPSRAGKTKRAK 174


>ref|YP_001353791.1| transcriptional activator FlhC [Janthinobacterium sp. Marseille]
 gb|ABR91027.1| FlhC flagellar transcriptional activator [Janthinobacterium sp.
           Marseille]
          Length = 181

 Score =  310 bits (794), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 150/174 (86%), Positives = 161/174 (92%)

Query: 54  MAKKSVVTEAQEIQLAIELINLGARLQLLESETSLSRERLLKLYKELKGVSPPKGMLPFS 113
           MAKKSVVTEAQEIQLAIELINLGARLQLLESETSLSRERLLKLYKEL+GVSPPKGMLPFS
Sbjct: 1   MAKKSVVTEAQEIQLAIELINLGARLQLLESETSLSRERLLKLYKELRGVSPPKGMLPFS 60

Query: 114 TDWFITWQPNIHSSLFINIHRYLIEHARISGIEAVMKAYKLYLEQVGYNDAGEPVLSLTR 173
           TDWFITWQPNIHSSLF+ IH+YLIEHA+ISGI+AVMKAYKLYLEQV     GEPVLSLTR
Sbjct: 61  TDWFITWQPNIHSSLFMGIHKYLIEHAQISGIQAVMKAYKLYLEQVELGADGEPVLSLTR 120

Query: 174 AWTLVRFFESKMLMTTPCCKCHGHFVVHRLDLHQDYLCGLCHMPSRAGKTKKAK 227
           AWTLVRFF+SKML T  C +C G+FVVHRLDL+ +Y CGLCHMPSRAGKTK+AK
Sbjct: 121 AWTLVRFFDSKMLATACCSECGGNFVVHRLDLNANYTCGLCHMPSRAGKTKRAK 174


>ref|ZP_08275668.1| Flagellar transcriptional activator flhC [Oxalobacteraceae
           bacterium IMCC9480]
 gb|EGF30857.1| Flagellar transcriptional activator flhC [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 184

 Score =  292 bits (748), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 140/172 (81%), Positives = 155/172 (90%)

Query: 54  MAKKSVVTEAQEIQLAIELINLGARLQLLESETSLSRERLLKLYKELKGVSPPKGMLPFS 113
           MAKKSVVTE+ EIQLAIELI LGARLQLLESETSLSRERLLKLYKELKGVSPPKGMLPFS
Sbjct: 1   MAKKSVVTESHEIQLAIELIKLGARLQLLESETSLSRERLLKLYKELKGVSPPKGMLPFS 60

Query: 114 TDWFITWQPNIHSSLFINIHRYLIEHARISGIEAVMKAYKLYLEQVGYNDAGEPVLSLTR 173
           TDWFITWQPN+HSSLFINI+++L EHA I+GI AV+KAYKLYLEQ+G     EPVLSLTR
Sbjct: 61  TDWFITWQPNVHSSLFINIYKFLQEHAHITGIVAVVKAYKLYLEQMGPEGDEEPVLSLTR 120

Query: 174 AWTLVRFFESKMLMTTPCCKCHGHFVVHRLDLHQDYLCGLCHMPSRAGKTKK 225
           AWT+VRFF+SKML T  C +C GHFVVH+LDL+  Y+CGLCHMPSRAGKT+K
Sbjct: 121 AWTMVRFFDSKMLNTACCTECSGHFVVHQLDLNAGYVCGLCHMPSRAGKTRK 172


>ref|YP_412001.1| transcriptional activator FlhC [Nitrosospira multiformis ATCC
           25196]
 gb|ABB74609.1| Flagellar transcriptional activator FlhC [Nitrosospira multiformis
           ATCC 25196]
          Length = 181

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 129/178 (72%), Positives = 150/178 (84%), Gaps = 1/178 (0%)

Query: 54  MAKKSVVTEAQEIQLAIELINLGARLQLLESETSLSRERLLKLYKELKGVSPPKGMLPFS 113
           M KKS+V+EA EI+ AIELI LGARLQLLESET+LSRERL+KLYKELKGVSPPKGMLPFS
Sbjct: 1   MRKKSIVSEANEIKTAIELIRLGARLQLLESETTLSRERLIKLYKELKGVSPPKGMLPFS 60

Query: 114 TDWFITWQPNIHSSLFINIHRYLIEHARISGIEAVMKAYKLYLEQVGYNDAGEPVLSLTR 173
           TDWF+TWQPNIHSS+F +I+RYLI H    GI A++K+YKLYLE     +  EP+LSLTR
Sbjct: 61  TDWFLTWQPNIHSSVFADIYRYLIAHGDCRGISAIIKSYKLYLEHCQVCEM-EPILSLTR 119

Query: 174 AWTLVRFFESKMLMTTPCCKCHGHFVVHRLDLHQDYLCGLCHMPSRAGKTKKAKDAVI 231
           AWTLVRFFESK++ TT C +C GHFVVH  DLH  Y+CGLCHMPSRAGKT KA+ A++
Sbjct: 120 AWTLVRFFESKLMQTTACNQCGGHFVVHANDLHHRYVCGLCHMPSRAGKTNKARTAMV 177