BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3499.p (312 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776381.1| flagellar motor component protein [Herbaspir... 551 e-155 ref|YP_001099598.1| flagellar motor protein MotB [Herminiimonas ... 427 e-117 ref|YP_546047.1| flagellar motor protein MotB [Methylobacillus f... 404 e-111 ref|YP_001353788.1| flagellar motor protein MotB [Janthinobacter... 403 e-110 ref|YP_315002.1| flagellar motor protein MotB [Thiobacillus deni... 399 e-109 >ref|YP_003776381.1| flagellar motor component protein [Herbaspirillum seropedicae SmR1] gb|ADJ64473.1| flagellar motor component protein [Herbaspirillum seropedicae SmR1] Length = 312 Score = 551 bits (1420), Expect = e-155, Method: Composition-based stats. Identities = 299/312 (95%), Positives = 306/312 (98%) Query: 1 MADEGLRPIIVKRIKKGGGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTAKGDLNGIAE 60 MADEGLRPIIVKRIKKGGGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTAKGDLNGIAE Sbjct: 1 MADEGLRPIIVKRIKKGGGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTAKGDLNGIAE 60 Query: 61 YFKTPLKVAMAGGSGSGDANTVLPGGGKDLTRQDGQLRKGENDVVSRKQNLKQAQQELER 120 YFKTPLKVAMAGGSGSGDANTVLPGGGKDLTRQDGQLRKGE DV +RKQNLKQAQQELE+ Sbjct: 61 YFKTPLKVAMAGGSGSGDANTVLPGGGKDLTRQDGQLRKGETDVTARKQNLKQAQQELEK 120 Query: 121 AERTRLEELKSRLEKAIDSNPTLKQFKNQLLIDITSEGLRIQIVDEKNRPMFALASAQLQ 180 ERTRLEELKSRLEKAIDSNPTLKQFKNQLLIDITSEGLRIQIVDEKNRPMFALASAQLQ Sbjct: 121 MERTRLEELKSRLEKAIDSNPTLKQFKNQLLIDITSEGLRIQIVDEKNRPMFALASAQLQ 180 Query: 181 PYTKEILHEIGRTLNDVPNKISLSGHTDATPYSRGEKGYSNWELSADRANASRRELITGG 240 PYTKEILHEIGRTLNDVPNKISLSGHTDATPYS+GEKGYSNWELSADRANASRRELI GG Sbjct: 181 PYTKEILHEIGRTLNDVPNKISLSGHTDATPYSKGEKGYSNWELSADRANASRRELIIGG 240 Query: 241 MDESKVLRVVGLSSAVLLDKEDPFNPINRRISIIVMNKKAEELVEKDSGSLNVPTDASDE 300 MDESKVLRVVGLSSAVLLDKEDPFNPINRRISIIVMNKKAEE+VEKDSGSLNVPTDASD Sbjct: 241 MDESKVLRVVGLSSAVLLDKEDPFNPINRRISIIVMNKKAEEMVEKDSGSLNVPTDASDG 300 Query: 301 DVQQGLSAPAKN 312 +VQQGL+ PA+N Sbjct: 301 EVQQGLNVPARN 312 >ref|YP_001099598.1| flagellar motor protein MotB [Herminiimonas arsenicoxydans] emb|CAL61471.1| Chemotaxis protein MotB (Motility protein B) [Herminiimonas arsenicoxydans] Length = 327 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 230/308 (74%), Positives = 268/308 (87%), Gaps = 1/308 (0%) Query: 1 MADEGLRPIIVKRIKKGGGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTAKGDLNGIAE 60 MADEGLRPIIVKRIKK GGGHHGGAWKIAYADFVTAMMAFFLLMWLLGST KG+L GIA+ Sbjct: 1 MADEGLRPIIVKRIKKSGGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTTKGNLQGIAD 60 Query: 61 YFKTPLKVAMAGGSGSGDANTVLPGGGKDLTRQDGQLRKGENDVVSRKQNLKQAQQELER 120 YF TPLKVAMAGGSGSGDA +V+ GGGKD+TR DGQ +KGEN ++ NLK A+ ELER Sbjct: 61 YFSTPLKVAMAGGSGSGDATSVIKGGGKDMTRIDGQQKKGENLTPTKSLNLKDAEAELER 120 Query: 121 AERTRLEELKSRLEKAIDSNPTLKQFKNQLLIDITSEGLRIQIVDEKNRPMFALASAQLQ 180 E RL+ LK R+E+AIDS P+L+Q+KNQLL+DITSEGLRIQIVDEKNRPMFAL+ A LQ Sbjct: 121 QEMNRLKSLKERIEEAIDSIPSLRQYKNQLLLDITSEGLRIQIVDEKNRPMFALSKADLQ 180 Query: 181 PYTKEILHEIGRTLNDVPNKISLSGHTDATPYSRGEKGYSNWELSADRANASRRELITGG 240 PYTK ILHEI +TLND+PN+ISLSGHTDATPYS GEK YSNWELS+DRANASRRELI GG Sbjct: 181 PYTKLILHEIAKTLNDIPNRISLSGHTDATPYSSGEKSYSNWELSSDRANASRRELIAGG 240 Query: 241 MDESKVLRVVGLSSAVLLDKEDPFNPINRRISIIVMNKKAEELVEKDSGSLNVPTDAS-D 299 M+E+K+LRVVGLSSAVL D++DP NPINRRISIIVMNKK E+ + K + +L+V ++A+ Sbjct: 241 MEEAKMLRVVGLSSAVLFDQKDPLNPINRRISIIVMNKKTEDSITKANRTLDVVSEATAK 300 Query: 300 EDVQQGLS 307 + V+ G++ Sbjct: 301 QTVENGVN 308 >ref|YP_546047.1| flagellar motor protein MotB [Methylobacillus flagellatus KT] gb|ABE50206.1| OmpA/MotB [Methylobacillus flagellatus KT] Length = 308 Score = 404 bits (1038), Expect = e-111, Method: Composition-based stats. Identities = 210/302 (69%), Positives = 251/302 (83%), Gaps = 4/302 (1%) Query: 1 MADEGLRPIIVKRIKKGGGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTAKGDLNGIAE 60 MA E +R I+VKRI K GGHHGGAWKIAYADFVTAMMAFFLLMWLLGST K DL GI+E Sbjct: 1 MAKENVR-IVVKRINKHAGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTTKADLQGISE 59 Query: 61 YFKTPLKVAMAGGSGSGDANTVLPGGGKDLTRQDGQLRKGENDVVSRKQNLKQAQQELER 120 YFKTPLKVAM GGSG+G +++VL GGG D+T++ GQ+R+ E+ +K +LK AQ+E+ + Sbjct: 60 YFKTPLKVAMQGGSGAGASDSVLKGGGNDMTKKQGQIRRAEDIDARKKPDLKTAQEEVAK 119 Query: 121 AERTRLEELKSRLEKAIDSNPTLKQFKNQLLIDITSEGLRIQIVDEKNRPMFALASAQLQ 180 AE +L+ELK R+E+AID++ TL+QFK QLL+DIT+EGLRIQIVDE+NRPMFA + A+LQ Sbjct: 120 AELEKLKELKRRIEEAIDASETLRQFKKQLLLDITTEGLRIQIVDEQNRPMFASSKAELQ 179 Query: 181 PYTKEILHEIGRTLNDVPNKISLSGHTDATPYSRGEKGYSNWELSADRANASRRELITGG 240 PY ++ILHEIG+ LNDVPNKISLSGHTDA PY GE+ YSNWELS+DRANASRREL++GG Sbjct: 180 PYARQILHEIGQLLNDVPNKISLSGHTDAAPYPSGERYYSNWELSSDRANASRRELVSGG 239 Query: 241 MDESKVLRVVGLSSAVLLDKEDPFNPINRRISIIVMNKKAEELVEKDSGSLNVPTDASDE 300 M E K+LRVVGLSSAVL DK++P NPINRRISII+MNKKAEE D GS V S E Sbjct: 240 MKEEKLLRVVGLSSAVLFDKDNPLNPINRRISIIIMNKKAEEETINDYGSAEV---ESAE 296 Query: 301 DV 302 DV Sbjct: 297 DV 298 >ref|YP_001353788.1| flagellar motor protein MotB [Janthinobacterium sp. Marseille] gb|ABR88776.1| MotB chemotaxis protein [Janthinobacterium sp. Marseille] Length = 328 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 226/309 (73%), Positives = 265/309 (85%), Gaps = 1/309 (0%) Query: 1 MADEGLRPIIVKRIKKGGGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTAKGDLNGIAE 60 MADEGLRPII+KRIKK GGGHHGGAWKIAYADFVTAMMAFFLLMWLLGST KGDL GIA+ Sbjct: 1 MADEGLRPIIIKRIKKSGGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTTKGDLQGIAD 60 Query: 61 YFKTPLKVAMAGGSGSGDANTVLPGGGKDLTRQDGQLRKGENDVVSRKQNLKQAQQELER 120 +F TPLKVAMAGGSGSGD+++V+ GGGKD+TR DGQ +KGE+ ++ NLK A+ ELER Sbjct: 61 FFSTPLKVAMAGGSGSGDSSSVIKGGGKDMTRIDGQQKKGEDLTPAKNFNLKAAEAELER 120 Query: 121 AERTRLEELKSRLEKAIDSNPTLKQFKNQLLIDITSEGLRIQIVDEKNRPMFALASAQLQ 180 E RL+ LK R+EKAID+ P L+QFKNQLLIDIT+EGLRIQIVDEKNRPMFALA A+LQ Sbjct: 121 QEVNRLKALKERIEKAIDTIPGLQQFKNQLLIDITTEGLRIQIVDEKNRPMFALARAELQ 180 Query: 181 PYTKEILHEIGRTLNDVPNKISLSGHTDATPYSRGEKGYSNWELSADRANASRRELITGG 240 PYTK ILHEI + LND+PN+ISLSGHTDATPYS GEK YSNWELS+DRANASRRELI GG Sbjct: 181 PYTKVILHEIAKILNDIPNRISLSGHTDATPYSSGEKSYSNWELSSDRANASRRELIAGG 240 Query: 241 MDESKVLRVVGLSSAVLLDKEDPFNPINRRISIIVMNKKAEELVEKDSGSLNVP-TDASD 299 M E+KVLRVVGLSSAVL D DP NP+NRRISIIV+NKKAE+ + +++ ++V +++ Sbjct: 241 MAENKVLRVVGLSSAVLFDSSDPLNPVNRRISIIVLNKKAEDSITQENKKVDVSDKESAQ 300 Query: 300 EDVQQGLSA 308 E V+ ++A Sbjct: 301 EAVETAVNA 309 >ref|YP_315002.1| flagellar motor protein MotB [Thiobacillus denitrificans ATCC 25259] gb|AAZ97197.1| outer membrane chemotaxis MotB protein [Thiobacillus denitrificans ATCC 25259] Length = 319 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 211/286 (73%), Positives = 243/286 (84%) Query: 8 PIIVKRIKKGGGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTAKGDLNGIAEYFKTPLK 67 PIIVKRIKK GGHHGGAWKIAYADFVTAMMAFFLLMWLLGST +GDL GIAEYFKTPLK Sbjct: 7 PIIVKRIKKTSGGHHGGAWKIAYADFVTAMMAFFLLMWLLGSTTRGDLEGIAEYFKTPLK 66 Query: 68 VAMAGGSGSGDANTVLPGGGKDLTRQDGQLRKGENDVVSRKQNLKQAQQELERAERTRLE 127 VAM GG+GSGD+++V+ GGG DLTR++GQ++KGE D + NLK AQ ELER E +L+ Sbjct: 67 VAMQGGTGSGDSSSVIKGGGADLTRKNGQIKKGEVDADRKSYNLKAAQAELERLETAKLK 126 Query: 128 ELKSRLEKAIDSNPTLKQFKNQLLIDITSEGLRIQIVDEKNRPMFALASAQLQPYTKEIL 187 +LK RLE AID NPTLKQFK QLLIDITSEGLRIQIVDE+NRPMF LASA+LQPYTK IL Sbjct: 127 QLKQRLEAAIDRNPTLKQFKRQLLIDITSEGLRIQIVDEQNRPMFNLASAELQPYTKVIL 186 Query: 188 HEIGRTLNDVPNKISLSGHTDATPYSRGEKGYSNWELSADRANASRRELITGGMDESKVL 247 HEI + LNDV N+ISLSGHTDA PY+ GE+GYSNWELSADRANASRRELI GGM E+K+L Sbjct: 187 HEIAQVLNDVENRISLSGHTDARPYANGERGYSNWELSADRANASRRELIVGGMSEAKML 246 Query: 248 RVVGLSSAVLLDKEDPFNPINRRISIIVMNKKAEELVEKDSGSLNV 293 RVVGL+S+V + PF+P+NRRISIIV+NK+ EE + K++ V Sbjct: 247 RVVGLASSVPFTQAKPFDPVNRRISIIVLNKRTEEAITKEASGAEV 292