BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3497.p         (121 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776379.1| chemotaxis cheY protein [Herbaspirillum sero...   221   2e-56
ref|YP_001353786.1| chemotaxis protein CheY [Janthinobacterium s...   194   3e-48
ref|YP_001099600.1| chemotactic response regulator [Herminiimona...   191   2e-47
ref|YP_003674644.1| response regulator receiver protein [Methylo...   185   2e-45
ref|YP_003048692.1| response regulator receiver protein [Methylo...   184   3e-45

>ref|YP_003776379.1| chemotaxis cheY protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ64471.1| chemotaxis cheY protein [Herbaspirillum seropedicae SmR1]
          Length = 121

 Score =  221 bits (564), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 119/121 (98%), Positives = 120/121 (99%)

Query: 1   MSKTILAVDDSGSLRQMVVFSLKAAGYNVTEAVDGVDALEKAKTHTFDLVLTDQNMPRMD 60
           MSKTILAVDDSGSLRQMVVFSLKAAGYNVTEAVDGVDALEKAK+ TFDLVLTDQNMPRMD
Sbjct: 1   MSKTILAVDDSGSLRQMVVFSLKAAGYNVTEAVDGVDALEKAKSQTFDLVLTDQNMPRMD 60

Query: 61  GLTLIRSLRELTSYARVPILMLTTEFSDEMKAKGKAAGANGWLVKPFDPQRLTEVVRKVI 120
           GLTLIRSLRELTSYARVPILMLTTEFSDEMKAKGKAAGANGWLVKPFDPQRLTEVVRKVI
Sbjct: 61  GLTLIRSLRELTSYARVPILMLTTEFSDEMKAKGKAAGANGWLVKPFDPQRLTEVVRKVI 120

Query: 121 G 121
           G
Sbjct: 121 G 121


>ref|YP_001353786.1| chemotaxis protein CheY [Janthinobacterium sp. Marseille]
 gb|ABR91213.1| chemotaxis protein CheY [Janthinobacterium sp. Marseille]
          Length = 121

 Score =  194 bits (494), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 100/121 (82%), Positives = 112/121 (92%)

Query: 1   MSKTILAVDDSGSLRQMVVFSLKAAGYNVTEAVDGVDALEKAKTHTFDLVLTDQNMPRMD 60
           M+KTILAVDDSGSLRQMVVFSL+AAGY VTEAVDG D L+KAKT  FDLVLTDQNMPRMD
Sbjct: 1   MAKTILAVDDSGSLRQMVVFSLRAAGYQVTEAVDGQDGLDKAKTQVFDLVLTDQNMPRMD 60

Query: 61  GLTLIRSLRELTSYARVPILMLTTEFSDEMKAKGKAAGANGWLVKPFDPQRLTEVVRKVI 120
           G +LIR+LR L++Y ++PIL+LTTE SDEMKAKG+AAGANGWLVKPFDPQRLTEVV+KVI
Sbjct: 61  GFSLIRALRALSTYQKIPILVLTTESSDEMKAKGRAAGANGWLVKPFDPQRLTEVVKKVI 120

Query: 121 G 121
           G
Sbjct: 121 G 121


>ref|YP_001099600.1| chemotactic response regulator [Herminiimonas arsenicoxydans]
 emb|CAL61473.1| Putative chemotaxis protein CheY [Herminiimonas arsenicoxydans]
          Length = 121

 Score =  191 bits (486), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 99/121 (81%), Positives = 110/121 (90%)

Query: 1   MSKTILAVDDSGSLRQMVVFSLKAAGYNVTEAVDGVDALEKAKTHTFDLVLTDQNMPRMD 60
           M+KTILAVDDSGSLRQMVVFSL+AAGY VTEAVDG D L+KA+   FDLVLTDQNMPRMD
Sbjct: 1   MTKTILAVDDSGSLRQMVVFSLRAAGYQVTEAVDGQDGLDKAQMQVFDLVLTDQNMPRMD 60

Query: 61  GLTLIRSLRELTSYARVPILMLTTEFSDEMKAKGKAAGANGWLVKPFDPQRLTEVVRKVI 120
           G +LIR+LR L +Y +VPIL+LTTE SDEMKAKG+AAGANGWLVKPFDPQRLTEVV+KVI
Sbjct: 61  GFSLIRALRALPTYQKVPILVLTTESSDEMKAKGRAAGANGWLVKPFDPQRLTEVVKKVI 120

Query: 121 G 121
           G
Sbjct: 121 G 121


>ref|YP_003674644.1| response regulator receiver protein [Methylotenera versatilis 301]
 gb|ADI30067.1| response regulator receiver protein [Methylotenera versatilis 301]
          Length = 122

 Score =  185 bits (469), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 99/121 (81%), Positives = 109/121 (90%)

Query: 1   MSKTILAVDDSGSLRQMVVFSLKAAGYNVTEAVDGVDALEKAKTHTFDLVLTDQNMPRMD 60
           M+KTILAVDDSGSLRQMV FSLKAAGY+V +AVDG D L+KAK  T DLVLTDQNMP MD
Sbjct: 1   MAKTILAVDDSGSLRQMVAFSLKAAGYDVVQAVDGQDGLDKAKEKTVDLVLTDQNMPIMD 60

Query: 61  GLTLIRSLRELTSYARVPILMLTTEFSDEMKAKGKAAGANGWLVKPFDPQRLTEVVRKVI 120
           GLTLI++LR+L SY +VPILMLTTE SDEMKAKGKAAGANGWLVKPFDP+RL EVV+KVI
Sbjct: 61  GLTLIKNLRDLGSYQKVPILMLTTESSDEMKAKGKAAGANGWLVKPFDPKRLIEVVQKVI 120

Query: 121 G 121
           G
Sbjct: 121 G 121


>ref|YP_003048692.1| response regulator receiver protein [Methylotenera mobilis JLW8]
 gb|ACT48165.1| response regulator receiver protein [Methylotenera mobilis JLW8]
          Length = 122

 Score =  184 bits (467), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 99/121 (81%), Positives = 107/121 (88%)

Query: 1   MSKTILAVDDSGSLRQMVVFSLKAAGYNVTEAVDGVDALEKAKTHTFDLVLTDQNMPRMD 60
           M+KTILAVDDSGSLRQMV FSLKAAGY+V +AVDG D L KAK  T DLVLTDQNMP MD
Sbjct: 1   MAKTILAVDDSGSLRQMVAFSLKAAGYDVIQAVDGQDGLNKAKEKTVDLVLTDQNMPIMD 60

Query: 61  GLTLIRSLRELTSYARVPILMLTTEFSDEMKAKGKAAGANGWLVKPFDPQRLTEVVRKVI 120
           GLTLI++LR L SY +VPILMLTTE SDEMKAKGKAAGANGWLVKPFDP+RL EVV+KVI
Sbjct: 61  GLTLIKNLRGLGSYQKVPILMLTTESSDEMKAKGKAAGANGWLVKPFDPKRLIEVVQKVI 120

Query: 121 G 121
           G
Sbjct: 121 G 121