BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3495.p (168 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776377.1| CheW chemotaxis protein [Herbaspirillum sero... 305 1e-81 ref|ZP_08273448.1| Positive regulator of CheA protein activity (... 258 2e-67 ref|YP_001353784.1| CheW purine-binding chemotaxis protein [Jant... 258 3e-67 ref|YP_001099602.1| purine-binding chemotaxis protein [Herminiim... 250 5e-65 ref|YP_315381.1| CheW protein [Thiobacillus denitrificans ATCC 2... 249 1e-64 >ref|YP_003776377.1| CheW chemotaxis protein [Herbaspirillum seropedicae SmR1] gb|ADJ64469.1| CheW chemotaxis protein, positive regulator of CheA protein activity [Herbaspirillum seropedicae SmR1] Length = 168 Score = 305 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 167/168 (99%), Positives = 168/168 (100%) Query: 1 MSDTATKNLSGFGEKTDSNGNEFLAFTLGKEEYGIDILKVQEIRGYEAVTRIANSPDFIK 60 MSDTA+KNLSGFGEKTDSNGNEFLAFTLGKEEYGIDILKVQEIRGYEAVTRIANSPDFIK Sbjct: 1 MSDTASKNLSGFGEKTDSNGNEFLAFTLGKEEYGIDILKVQEIRGYEAVTRIANSPDFIK 60 Query: 61 GVVNLRGIIVPIVDMRIKFQLGEPTYDQFTVVIILNIGGRVVGMVVDSVSDVITLTQEQI 120 GVVNLRGIIVPIVDMRIKFQLGEPTYDQFTVVIILNIGGRVVGMVVDSVSDVITLTQEQI Sbjct: 61 GVVNLRGIIVPIVDMRIKFQLGEPTYDQFTVVIILNIGGRVVGMVVDSVSDVITLTQEQI 120 Query: 121 KPAPEMGTTFDSDYLIGLGTLEQRMLILVDIDKLMSSAEMGLIEKLAA 168 KPAPEMGTTFDSDYLIGLGTLEQRMLILVDIDKLMSSAEMGLIEKLAA Sbjct: 121 KPAPEMGTTFDSDYLIGLGTLEQRMLILVDIDKLMSSAEMGLIEKLAA 168 >ref|ZP_08273448.1| Positive regulator of CheA protein activity (CheW) [Oxalobacteraceae bacterium IMCC9480] gb|EGF33082.1| Positive regulator of CheA protein activity (CheW) [Oxalobacteraceae bacterium IMCC9480] Length = 170 Score = 258 bits (658), Expect = 2e-67, Method: Composition-based stats. Identities = 141/170 (82%), Positives = 154/170 (90%), Gaps = 2/170 (1%) Query: 1 MSDTATKNLSGFGEKTDSN--GNEFLAFTLGKEEYGIDILKVQEIRGYEAVTRIANSPDF 58 MS+ A N G K + GNEFLAFTLGKEEYGIDILKVQEIRGYEAVTRIAN+P+F Sbjct: 1 MSEAAQINAQVLGAKATAEIAGNEFLAFTLGKEEYGIDILKVQEIRGYEAVTRIANAPEF 60 Query: 59 IKGVVNLRGIIVPIVDMRIKFQLGEPTYDQFTVVIILNIGGRVVGMVVDSVSDVITLTQE 118 +KGVVNLRGIIVPIVDMRIKF LGEPTYDQFTVVIILNIGGRV+GMVVDSVSDVITL+ E Sbjct: 61 VKGVVNLRGIIVPIVDMRIKFNLGEPTYDQFTVVIILNIGGRVMGMVVDSVSDVITLSAE 120 Query: 119 QIKPAPEMGTTFDSDYLIGLGTLEQRMLILVDIDKLMSSAEMGLIEKLAA 168 QIKPAPEMGT F++DYLIGLGTL++RMLIL+DIDKLMSSAEMGLIEK+AA Sbjct: 121 QIKPAPEMGTAFNTDYLIGLGTLDERMLILIDIDKLMSSAEMGLIEKIAA 170 >ref|YP_001353784.1| CheW purine-binding chemotaxis protein [Janthinobacterium sp. Marseille] gb|ABR89007.1| CheW purine-binding chemotaxis protein [Janthinobacterium sp. Marseille] Length = 163 Score = 258 bits (658), Expect = 3e-67, Method: Composition-based stats. Identities = 137/150 (91%), Positives = 147/150 (98%) Query: 19 NGNEFLAFTLGKEEYGIDILKVQEIRGYEAVTRIANSPDFIKGVVNLRGIIVPIVDMRIK 78 NGNEFLAFTLGKEEYGIDILKVQEIRGYEAVTRIAN+P+F+KGVVNLRGIIVPIVDMRIK Sbjct: 14 NGNEFLAFTLGKEEYGIDILKVQEIRGYEAVTRIANAPEFVKGVVNLRGIIVPIVDMRIK 73 Query: 79 FQLGEPTYDQFTVVIILNIGGRVVGMVVDSVSDVITLTQEQIKPAPEMGTTFDSDYLIGL 138 F LGEPTYDQFTVVIILNIGGRVVGMVVDSVSDVITL+ EQIKPAPEMGT F++DYLIGL Sbjct: 74 FNLGEPTYDQFTVVIILNIGGRVVGMVVDSVSDVITLSPEQIKPAPEMGTAFNTDYLIGL 133 Query: 139 GTLEQRMLILVDIDKLMSSAEMGLIEKLAA 168 GTL++RMLILVDIDKLMSS+EMGLIEK+AA Sbjct: 134 GTLDERMLILVDIDKLMSSSEMGLIEKIAA 163 >ref|YP_001099602.1| purine-binding chemotaxis protein [Herminiimonas arsenicoxydans] emb|CAL61475.1| Chemotaxis protein CheW [Herminiimonas arsenicoxydans] Length = 163 Score = 250 bits (639), Expect = 5e-65, Method: Composition-based stats. Identities = 133/149 (89%), Positives = 143/149 (95%) Query: 20 GNEFLAFTLGKEEYGIDILKVQEIRGYEAVTRIANSPDFIKGVVNLRGIIVPIVDMRIKF 79 GNEFLAFTLG+EEYGIDILKVQEIRGYE VTRIAN+P+F+KGVVNLRGIIVPIVDMRIKF Sbjct: 15 GNEFLAFTLGREEYGIDILKVQEIRGYETVTRIANAPEFVKGVVNLRGIIVPIVDMRIKF 74 Query: 80 QLGEPTYDQFTVVIILNIGGRVVGMVVDSVSDVITLTQEQIKPAPEMGTTFDSDYLIGLG 139 LGEPTYDQFTVVIILNIGGRVVGMVVDSVSDVITL+ EQIKPAPEMGT F++DYLIGLG Sbjct: 75 NLGEPTYDQFTVVIILNIGGRVVGMVVDSVSDVITLSPEQIKPAPEMGTAFNTDYLIGLG 134 Query: 140 TLEQRMLILVDIDKLMSSAEMGLIEKLAA 168 TL++RMLILVDIDKLMSS EMGLIE +AA Sbjct: 135 TLDERMLILVDIDKLMSSEEMGLIENIAA 163 >ref|YP_315381.1| CheW protein [Thiobacillus denitrificans ATCC 25259] gb|AAZ97576.1| CheW protein [Thiobacillus denitrificans ATCC 25259] Length = 167 Score = 249 bits (635), Expect = 1e-64, Method: Composition-based stats. Identities = 130/154 (84%), Positives = 145/154 (94%) Query: 15 KTDSNGNEFLAFTLGKEEYGIDILKVQEIRGYEAVTRIANSPDFIKGVVNLRGIIVPIVD 74 + + +GNE+LAFTLG+EEYGIDIL+VQEIRGYE VTRIAN+P FIKGVVNLRG IVP+VD Sbjct: 14 EAEGDGNEYLAFTLGREEYGIDILRVQEIRGYEPVTRIANAPAFIKGVVNLRGTIVPVVD 73 Query: 75 MRIKFQLGEPTYDQFTVVIILNIGGRVVGMVVDSVSDVITLTQEQIKPAPEMGTTFDSDY 134 MRIKF LGEPTYDQFTVVIILNIGGRVVGMVVDSVSDV+TL EQ+KPAPE+GTTFD+DY Sbjct: 74 MRIKFNLGEPTYDQFTVVIILNIGGRVVGMVVDSVSDVMTLAPEQVKPAPEIGTTFDTDY 133 Query: 135 LIGLGTLEQRMLILVDIDKLMSSAEMGLIEKLAA 168 LIGLGTL+ RMLILVDIDKLMSS+EMGLI+KLAA Sbjct: 134 LIGLGTLDDRMLILVDIDKLMSSSEMGLIDKLAA 167