BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3487.p (136 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776370.1| succinate dehydrogenase, hydrophobic subunit... 218 2e-55 ref|YP_004752401.1| succinate dehydrogenase cytochrome b-556 sub... 186 1e-45 ref|ZP_08273492.1| Succinate dehydrogenase cytochrome b-556 subu... 181 2e-44 ref|YP_001100059.1| succinate dehydrogenase, hydrophobic subunit... 145 2e-33 emb|CCA83384.1| succinate dehydrogenase, hydrophobic subunit,cyt... 140 6e-32 >ref|YP_003776370.1| succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with SdhD protein [Herbaspirillum seropedicae SmR1] gb|ADJ64462.1| succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with SdhD protein [Herbaspirillum seropedicae SmR1] Length = 136 Score = 218 bits (555), Expect = 2e-55, Method: Composition-based stats. Identities = 129/136 (94%), Positives = 133/136 (97%) Query: 1 MSEAAKPQRPQFRNIHLTQIAGYRMPLAAIVSIMHRISGLFLFLMLPFILFLLDSSLLSE 60 MSEAAKPQRPQFRNIHLTQIAGYRMPLAAIVSIMHRISGLFLFLMLPFIL+LLDSSLLSE Sbjct: 1 MSEAAKPQRPQFRNIHLTQIAGYRMPLAAIVSIMHRISGLFLFLMLPFILYLLDSSLLSE 60 Query: 61 GTFAYLKGFVSGWFVKLVILALSWAYLHHFCAGIRHLIMDNHVGLDKDSARKSSATVLVV 120 GTF YLKGF SGWFVKLVILALSWAYLHHFCAGIRHLIMDNH+GLDKDSARKSSATVLV+ Sbjct: 61 GTFDYLKGFTSGWFVKLVILALSWAYLHHFCAGIRHLIMDNHIGLDKDSARKSSATVLVI 120 Query: 121 SIALMILVALKLFGVF 136 SIALM+LVALKLFG F Sbjct: 121 SIALMVLVALKLFGAF 136 >ref|YP_004752401.1| succinate dehydrogenase cytochrome b-556 subunit [Collimonas fungivorans Ter331] gb|AEK61578.1| Succinate dehydrogenase cytochrome b-556 subunit [Collimonas fungivorans Ter331] Length = 136 Score = 186 bits (471), Expect = 1e-45, Method: Composition-based stats. Identities = 105/136 (77%), Positives = 121/136 (88%) Query: 1 MSEAAKPQRPQFRNIHLTQIAGYRMPLAAIVSIMHRISGLFLFLMLPFILFLLDSSLLSE 60 MSEAAKP RPQFRNI++TQI GYR+PLA I+SI+HRISGL +FL+LPFILFLLD SL+SE Sbjct: 1 MSEAAKPNRPQFRNINITQIVGYRLPLAGIISILHRISGLLMFLLLPFILFLLDKSLVSE 60 Query: 61 GTFAYLKGFVSGWFVKLVILALSWAYLHHFCAGIRHLIMDNHVGLDKDSARKSSATVLVV 120 +F Y KGF S WFVKLVILALSWAYLHHFCAGIRHL+MDNH+GL KDSARKS+A VL+V Sbjct: 61 SSFEYFKGFTSNWFVKLVILALSWAYLHHFCAGIRHLVMDNHIGLTKDSARKSAAGVLIV 120 Query: 121 SIALMILVALKLFGVF 136 S+ L ++VALKLFG F Sbjct: 121 SVPLALIVALKLFGAF 136 >ref|ZP_08273492.1| Succinate dehydrogenase cytochrome b-556 subunit [Oxalobacteraceae bacterium IMCC9480] gb|EGF33033.1| Succinate dehydrogenase cytochrome b-556 subunit [Oxalobacteraceae bacterium IMCC9480] Length = 136 Score = 181 bits (460), Expect = 2e-44, Method: Composition-based stats. Identities = 93/136 (68%), Positives = 111/136 (81%) Query: 1 MSEAAKPQRPQFRNIHLTQIAGYRMPLAAIVSIMHRISGLFLFLMLPFILFLLDSSLLSE 60 MSE K RP+FRNIH+TQ+A YR+PLA ++SI+HRISG +F +LP IL+LLD SLLSE Sbjct: 1 MSEVTKTNRPEFRNIHVTQLANYRLPLAGLISILHRISGFLMFALLPVILYLLDQSLLSE 60 Query: 61 GTFAYLKGFVSGWFVKLVILALSWAYLHHFCAGIRHLIMDNHVGLDKDSARKSSATVLVV 120 GTF Y KG S WFVKLV+LA+SWA+LHHFCAGIRHL MDNH+G++KDSARKS+ V V Sbjct: 61 GTFEYFKGITSNWFVKLVLLAVSWAFLHHFCAGIRHLFMDNHIGIEKDSARKSAVIVFAV 120 Query: 121 SIALMILVALKLFGVF 136 S+ L LVALKLFG F Sbjct: 121 SLPLAGLVALKLFGAF 136 >ref|YP_001100059.1| succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with SdhD [Herminiimonas arsenicoxydans] emb|CAL61934.1| Succinate dehydrogenase cytochrome b556 subunit (Cytochrome b-556) [Herminiimonas arsenicoxydans] Length = 136 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 88/136 (64%), Positives = 104/136 (76%) Query: 1 MSEAAKPQRPQFRNIHLTQIAGYRMPLAAIVSIMHRISGLFLFLMLPFILFLLDSSLLSE 60 MS++ K +PQFRNI++ + YRMPLAAIVSIMHRISG +FL+LP IL LLD SL+SE Sbjct: 1 MSDSLKTGKPQFRNINIADLVHYRMPLAAIVSIMHRISGALIFLLLPVILLLLDKSLMSE 60 Query: 61 GTFAYLKGFVSGWFVKLVILALSWAYLHHFCAGIRHLIMDNHVGLDKDSARKSSATVLVV 120 +F + KG S WFVKL+ILAL WAYLHHFCAGIRHL D HVG+DK RKS+ VL + Sbjct: 61 ISFEHFKGIASHWFVKLIILALVWAYLHHFCAGIRHLFADVHVGVDKVKGRKSAVIVLAI 120 Query: 121 SIALMILVALKLFGVF 136 S+ L LVALKLFG F Sbjct: 121 SLPLTALVALKLFGAF 136 >emb|CCA83384.1| succinate dehydrogenase, hydrophobic subunit,cytochrome b556 with SdhD [blood disease bacterium R229] emb|CCA84372.1| succinate dehydrogenase, hydrophobic subunit,cytochrome b556 with SdhD [Ralstonia syzygii R24] Length = 136 Score = 140 bits (353), Expect = 6e-32, Method: Composition-based stats. Identities = 75/136 (55%), Positives = 102/136 (75%) Query: 1 MSEAAKPQRPQFRNIHLTQIAGYRMPLAAIVSIMHRISGLFLFLMLPFILFLLDSSLLSE 60 M+EA K RP+FRNI L IA YR+P A VSI+HR+SG +FL+LPF+L+L + SL SE Sbjct: 1 MAEAIKKARPEFRNIGLGDIAHYRLPWAGKVSILHRVSGALMFLLLPFVLYLFEQSLTSE 60 Query: 61 GTFAYLKGFVSGWFVKLVILALSWAYLHHFCAGIRHLIMDNHVGLDKDSARKSSATVLVV 120 +FA +S F K+V+LAL WAYLHHFCAGIR+LI+D H+G+DK ++ KS+ +VL+V Sbjct: 61 ISFAKFTALLSNGFAKVVVLALIWAYLHHFCAGIRYLILDLHIGIDKTTSSKSAVSVLIV 120 Query: 121 SIALMILVALKLFGVF 136 S+ L ++ KLFG+F Sbjct: 121 SLLLTVVFGAKLFGLF 136