BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3485.p         (236 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776368.1| succinate dehydrogenase Fe-S subunit [Herbas...   470   e-131
ref|YP_004752404.1| succinate dehydrogenase iron-sulfur protein ...   451   e-125
ref|YP_001353199.1| succinate dehydrogenase iron-sulfur subunit ...   436   e-120
ref|YP_001100056.1| succinate dehydrogenase iron-sulfur subunit ...   435   e-120
ref|ZP_08273495.1| Succinate dehydrogenase iron-sulfur protein [...   428   e-118

>ref|YP_003776368.1| succinate dehydrogenase Fe-S subunit [Herbaspirillum seropedicae
           SmR1]
 emb|CAM32703.1| Succinate dehydrogenase Fe-S protein subunit protein
           [Herbaspirillum seropedicae]
 gb|ADJ64460.1| succinate dehydrogenase Fe-S subunit protein [Herbaspirillum
           seropedicae SmR1]
          Length = 236

 Score =  470 bits (1210), Expect = e-131,   Method: Composition-based stats.
 Identities = 236/236 (100%), Positives = 236/236 (100%)

Query: 1   MTRTLKFKIYRYDPDKDDKPYMQDLTVELKPTDKMLLDALQRIKSDVDDSLALRRSCREG 60
           MTRTLKFKIYRYDPDKDDKPYMQDLTVELKPTDKMLLDALQRIKSDVDDSLALRRSCREG
Sbjct: 1   MTRTLKFKIYRYDPDKDDKPYMQDLTVELKPTDKMLLDALQRIKSDVDDSLALRRSCREG 60

Query: 61  VCGSDAMNINGKNGLACITNLNELTEPIVLKPLPGLPVIRDLIVDMTNFFKQYDSIKPYL 120
           VCGSDAMNINGKNGLACITNLNELTEPIVLKPLPGLPVIRDLIVDMTNFFKQYDSIKPYL
Sbjct: 61  VCGSDAMNINGKNGLACITNLNELTEPIVLKPLPGLPVIRDLIVDMTNFFKQYDSIKPYL 120

Query: 121 INDSIPPEKERLQSPEQREELDGVYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFI 180
           INDSIPPEKERLQSPEQREELDGVYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFI
Sbjct: 121 INDSIPPEKERLQSPEQREELDGVYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFI 180

Query: 181 ADSRDEATGARLDNLEDPYRLFRCRSIMNCVDVCPKGLNPNKAIGKIKELMVRRSV 236
           ADSRDEATGARLDNLEDPYRLFRCRSIMNCVDVCPKGLNPNKAIGKIKELMVRRSV
Sbjct: 181 ADSRDEATGARLDNLEDPYRLFRCRSIMNCVDVCPKGLNPNKAIGKIKELMVRRSV 236


>ref|YP_004752404.1| succinate dehydrogenase iron-sulfur protein [Collimonas fungivorans
           Ter331]
 gb|AEK61581.1| Succinate dehydrogenase iron-sulfur protein [Collimonas fungivorans
           Ter331]
          Length = 237

 Score =  451 bits (1159), Expect = e-125,   Method: Composition-based stats.
 Identities = 222/235 (94%), Positives = 230/235 (97%)

Query: 2   TRTLKFKIYRYDPDKDDKPYMQDLTVELKPTDKMLLDALQRIKSDVDDSLALRRSCREGV 61
           +RTLKFKIYRYDPDKD KPYMQDLTVEL PTDKMLLDALQRIK+DVDDSLALRRSCREGV
Sbjct: 3   SRTLKFKIYRYDPDKDAKPYMQDLTVELLPTDKMLLDALQRIKADVDDSLALRRSCREGV 62

Query: 62  CGSDAMNINGKNGLACITNLNELTEPIVLKPLPGLPVIRDLIVDMTNFFKQYDSIKPYLI 121
           CGSDAMNINGKNGLAC TNLNELTEPIVLKPLPGLPVIRDLIVDMT FFKQY+SIKP+LI
Sbjct: 63  CGSDAMNINGKNGLACTTNLNELTEPIVLKPLPGLPVIRDLIVDMTQFFKQYESIKPFLI 122

Query: 122 NDSIPPEKERLQSPEQREELDGVYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFIA 181
           ND+IPPEKERLQ+PEQREELDG+YECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFIA
Sbjct: 123 NDNIPPEKERLQTPEQREELDGLYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFIA 182

Query: 182 DSRDEATGARLDNLEDPYRLFRCRSIMNCVDVCPKGLNPNKAIGKIKELMVRRSV 236
           DSRDEATGARLDNLEDPYRLFRCRSIMNCVDVCPKGLNPN AIGKIKELMVRR+V
Sbjct: 183 DSRDEATGARLDNLEDPYRLFRCRSIMNCVDVCPKGLNPNAAIGKIKELMVRRAV 237


>ref|YP_001353199.1| succinate dehydrogenase iron-sulfur subunit [Janthinobacterium sp.
           Marseille]
 gb|ABR89231.1| succinate dehydrogenase iron-sulfur protein [Janthinobacterium sp.
           Marseille]
          Length = 236

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 210/236 (88%), Positives = 223/236 (94%)

Query: 1   MTRTLKFKIYRYDPDKDDKPYMQDLTVELKPTDKMLLDALQRIKSDVDDSLALRRSCREG 60
           M RTL+ +IYRYDPDKD KPYMQD+TVEL   DKMLLDALQRIK+ VDDSLALRRSCREG
Sbjct: 1   MARTLRLQIYRYDPDKDAKPYMQDVTVELHDHDKMLLDALQRIKATVDDSLALRRSCREG 60

Query: 61  VCGSDAMNINGKNGLACITNLNELTEPIVLKPLPGLPVIRDLIVDMTNFFKQYDSIKPYL 120
           VCGSDAMNINGKNGLAC TNLNELTEPIVL+PLPGLPVIRDLIVDMT FFKQYDSIKP+L
Sbjct: 61  VCGSDAMNINGKNGLACTTNLNELTEPIVLRPLPGLPVIRDLIVDMTQFFKQYDSIKPFL 120

Query: 121 INDSIPPEKERLQSPEQREELDGVYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFI 180
           IND+IPPEKERLQ+P +REELDG+YECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFI
Sbjct: 121 INDTIPPEKERLQTPAEREELDGLYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFI 180

Query: 181 ADSRDEATGARLDNLEDPYRLFRCRSIMNCVDVCPKGLNPNKAIGKIKELMVRRSV 236
           ADSRD ATGARLDNLEDPYRLFRC +IMNCVDVCPKGLNP +AIGKIKELMVRR+V
Sbjct: 181 ADSRDHATGARLDNLEDPYRLFRCHTIMNCVDVCPKGLNPTRAIGKIKELMVRRAV 236


>ref|YP_001100056.1| succinate dehydrogenase iron-sulfur subunit [Herminiimonas
           arsenicoxydans]
 emb|CAL61931.1| succinate dehydrogenase (ubiquinone), Fe-S protein [Herminiimonas
           arsenicoxydans]
          Length = 236

 Score =  435 bits (1118), Expect = e-120,   Method: Composition-based stats.
 Identities = 209/236 (88%), Positives = 225/236 (95%)

Query: 1   MTRTLKFKIYRYDPDKDDKPYMQDLTVELKPTDKMLLDALQRIKSDVDDSLALRRSCREG 60
           M RTL+ +IYRYDPDKD KPYMQD+TVEL   DKMLLDALQRIK+DVDD+L+LRRSCREG
Sbjct: 1   MARTLRLQIYRYDPDKDAKPYMQDVTVELHDHDKMLLDALQRIKADVDDTLSLRRSCREG 60

Query: 61  VCGSDAMNINGKNGLACITNLNELTEPIVLKPLPGLPVIRDLIVDMTNFFKQYDSIKPYL 120
           VCGSDAMNINGKNGLAC TNLNELTEPIVL+PLPGLPVIRDLIVDMT FFKQYDSIKP+L
Sbjct: 61  VCGSDAMNINGKNGLACTTNLNELTEPIVLRPLPGLPVIRDLIVDMTQFFKQYDSIKPFL 120

Query: 121 INDSIPPEKERLQSPEQREELDGVYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFI 180
           IND+IPPEKERLQ+P +REELDG+YECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFI
Sbjct: 121 INDTIPPEKERLQTPAEREELDGLYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFI 180

Query: 181 ADSRDEATGARLDNLEDPYRLFRCRSIMNCVDVCPKGLNPNKAIGKIKELMVRRSV 236
           ADSRDEATGARLDNLEDPYRLFRC +IMNCVDVCPKGLNP +AIGKIKEL+VRR+V
Sbjct: 181 ADSRDEATGARLDNLEDPYRLFRCHTIMNCVDVCPKGLNPTRAIGKIKELLVRRAV 236


>ref|ZP_08273495.1| Succinate dehydrogenase iron-sulfur protein [Oxalobacteraceae
           bacterium IMCC9480]
 gb|EGF33036.1| Succinate dehydrogenase iron-sulfur protein [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 236

 Score =  428 bits (1100), Expect = e-118,   Method: Composition-based stats.
 Identities = 209/236 (88%), Positives = 222/236 (94%)

Query: 1   MTRTLKFKIYRYDPDKDDKPYMQDLTVELKPTDKMLLDALQRIKSDVDDSLALRRSCREG 60
           M RTL F+IYRYDPDKD KPYMQ LTVEL+ TDKMLLDALQRIK+DVDDSLALRRSCREG
Sbjct: 1   MPRTLNFEIYRYDPDKDAKPYMQKLTVELQDTDKMLLDALQRIKADVDDSLALRRSCREG 60

Query: 61  VCGSDAMNINGKNGLACITNLNELTEPIVLKPLPGLPVIRDLIVDMTNFFKQYDSIKPYL 120
           VCGSDAMNINGKNGLAC TNL EL +PIVL+PLPGLPVIRDLIVDMT FFKQY+SIKP+L
Sbjct: 61  VCGSDAMNINGKNGLACTTNLKELKQPIVLRPLPGLPVIRDLIVDMTQFFKQYNSIKPFL 120

Query: 121 INDSIPPEKERLQSPEQREELDGVYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFI 180
           IN +IPPEKERLQSP +REELDG+YECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFI
Sbjct: 121 INTTIPPEKERLQSPTEREELDGLYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFI 180

Query: 181 ADSRDEATGARLDNLEDPYRLFRCRSIMNCVDVCPKGLNPNKAIGKIKELMVRRSV 236
           AD+RDEAT  RLDNLEDPYRLFRC SIMNCVDVCPKGLNPNKAIGKIKE+MVRR+V
Sbjct: 181 ADTRDEATAERLDNLEDPYRLFRCHSIMNCVDVCPKGLNPNKAIGKIKEMMVRRAV 236