BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3484.p         (99 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776367.1| hypothetical protein Hsero_2971 [Herbaspiril...   110   7e-23
ref|YP_004752405.1| YgfY [Collimonas fungivorans Ter331] >gi|340...    89   2e-16
ref|ZP_08273496.1| YgfY [Oxalobacteraceae bacterium IMCC9480] >g...    81   6e-14
ref|YP_001353200.1| hypothetical protein mma_1510 [Janthinobacte...    70   9e-11
gb|EGD02992.1| hypothetical protein B1M_18707 [Burkholderia sp. ...    67   9e-10

>ref|YP_003776367.1| hypothetical protein Hsero_2971 [Herbaspirillum seropedicae SmR1]
 gb|ADJ64459.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 94

 Score =  110 bits (275), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 91/94 (96%), Positives = 93/94 (98%)

Query: 6  MSEFMTEQRHQDDPAKRARLRWRARRGLLENDLILTRYLDANEAQMSDDEVDAFSRLMDL 65
          MSEFMT +RHQDDPAKRARLRWRARRGLLENDLILTRYLDA+EAQMSDDEVDAFSRLMDL
Sbjct: 1  MSEFMTAERHQDDPAKRARLRWRARRGLLENDLILTRYLDAHEAQMSDDEVDAFSRLMDL 60

Query: 66 TDNDLMDLLLARKEPEAAVDLPQVHALLKKLRTA 99
          TDNDLMDLLLARKEPEAAVDLPQVHALLKKLRTA
Sbjct: 61 TDNDLMDLLLARKEPEAAVDLPQVHALLKKLRTA 94


>ref|YP_004752405.1| YgfY [Collimonas fungivorans Ter331]
 gb|AEK61582.1| YgfY [Collimonas fungivorans Ter331]
          Length = 92

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 69/85 (81%), Positives = 78/85 (91%)

Query: 15 HQDDPAKRARLRWRARRGLLENDLILTRYLDANEAQMSDDEVDAFSRLMDLTDNDLMDLL 74
          HQ DPA RARLRWRARRGLLENDLILTR+LDANEA M+DD+VDAFSRLMDL+DN+LMDLL
Sbjct: 8  HQADPANRARLRWRARRGLLENDLILTRFLDANEASMTDDDVDAFSRLMDLSDNELMDLL 67

Query: 75 LARKEPEAAVDLPQVHALLKKLRTA 99
          L RKEP+  +DLPQVHALL ++RTA
Sbjct: 68 LVRKEPDGLLDLPQVHALLARIRTA 92


>ref|ZP_08273496.1| YgfY [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF33037.1| YgfY [Oxalobacteraceae bacterium IMCC9480]
          Length = 89

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 63/85 (74%), Positives = 76/85 (89%)

Query: 15 HQDDPAKRARLRWRARRGLLENDLILTRYLDANEAQMSDDEVDAFSRLMDLTDNDLMDLL 74
          HQ DPA RARLRWRARRGLLENDLILTR+LDA+EA ++DDEVDA +R++D++DNDLMDL+
Sbjct: 5  HQSDPANRARLRWRARRGLLENDLILTRFLDAHEAGLTDDEVDALTRILDVSDNDLMDLI 64

Query: 75 LARKEPEAAVDLPQVHALLKKLRTA 99
          LARKEP+   DLP+VHALL +LR A
Sbjct: 65 LARKEPDGVDDLPRVHALLTRLRAA 89


>ref|YP_001353200.1| hypothetical protein mma_1510 [Janthinobacterium sp. Marseille]
 gb|ABR91728.1| Uncharacterized conserved protein [Janthinobacterium sp.
          Marseille]
          Length = 89

 Score = 70.5 bits (171), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 54/83 (65%), Positives = 68/83 (81%)

Query: 15 HQDDPAKRARLRWRARRGLLENDLILTRYLDANEAQMSDDEVDAFSRLMDLTDNDLMDLL 74
          HQ DP KRARLRWR RRGLLENDL+LTR+LD +E  ++D+EV+AFS L++L DN+L++LL
Sbjct: 5  HQADPVKRARLRWRGRRGLLENDLLLTRFLDQHEETLTDEEVEAFSILLELPDNELLNLL 64

Query: 75 LARKEPEAAVDLPQVHALLKKLR 97
          LAR EPE   D+P V ALL +LR
Sbjct: 65 LARNEPEGEADVPHVRALLTRLR 87


>gb|EGD02992.1| hypothetical protein B1M_18707 [Burkholderia sp. TJI49]
          Length = 96

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 55/88 (62%), Positives = 68/88 (77%)

Query: 10 MTEQRHQDDPAKRARLRWRARRGLLENDLILTRYLDANEAQMSDDEVDAFSRLMDLTDND 69
          M++  HQ DP +RARLRWRARRGLLENDL+  R+   +E  ++D +V A SRL+DL+DND
Sbjct: 7  MSDNAHQSDPHRRARLRWRARRGLLENDLVFERFFSRHEHDLTDADVGALSRLLDLSDND 66

Query: 70 LMDLLLARKEPEAAVDLPQVHALLKKLR 97
          LMDLLLARKEPE  +D P VH LL+ LR
Sbjct: 67 LMDLLLARKEPEGDLDSPDVHRLLEMLR 94