BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3480.p (475 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776363.1| 2-oxoglutarate dehydrogenase E3 component li... 875 0.0 ref|YP_004752409.1| dihydrolipoamide dehydrogenase of 2-oxogluta... 805 0.0 ref|YP_001353204.1| dihydrolipoamide dehydrogenase [Janthinobact... 790 0.0 ref|ZP_08273501.1| Dihydrolipoamide dehydrogenase of 2-oxoglutar... 771 0.0 ref|YP_982089.1| dihydrolipoamide dehydrogenase [Polaromonas nap... 764 0.0 >ref|YP_003776363.1| 2-oxoglutarate dehydrogenase E3 component lipoamide dehydrogenase [Herbaspirillum seropedicae SmR1] gb|ADJ64455.1| 2-oxoglutarate dehydrogenase, E3 component, lipoamide dehydrogenase protein [Herbaspirillum seropedicae SmR1] Length = 475 Score = 875 bits (2260), Expect = 0.0, Method: Composition-based stats. Identities = 467/475 (98%), Positives = 473/475 (99%) Query: 1 MSKNFDVVVIGGGPGGYIAAIRAAQLGFNTACIDEWKNQKGGPAPGGTCTNVGCIPSKAL 60 MSKNFDVVVIGGGPGGYIAAIRAAQLGFNTACIDEWKN+KGGPAPGGTCTNVGCIPSKAL Sbjct: 1 MSKNFDVVVIGGGPGGYIAAIRAAQLGFNTACIDEWKNEKGGPAPGGTCTNVGCIPSKAL 60 Query: 61 LQSSEHYEHASHGFAEHGIEVKGLGLNLEKMLGRKNTVVKQNNDGILYLFKKNKVAFFHG 120 LQSSEHYEHASHGFAEHGIEVKGLGLNLEKMLGRKNTVVKQNNDGILYLFKKNKV+FFHG Sbjct: 61 LQSSEHYEHASHGFAEHGIEVKGLGLNLEKMLGRKNTVVKQNNDGILYLFKKNKVSFFHG 120 Query: 121 RGSFVKGDANGYEIKVAGAAEETITAKHVIVATGSNARALPGAEFDEKLILSNTGALAIS 180 RGSFVKGDANGYEIKVAGAAEETITAKHVIVATGSNARALPGAEFDEKLILSNTGAL+I+ Sbjct: 121 RGSFVKGDANGYEIKVAGAAEETITAKHVIVATGSNARALPGAEFDEKLILSNTGALSIT 180 Query: 181 EVPKKLGVIGAGVIGLEMGSVWRRLGAEVTVLEALPTFLGAVDEQIAKEAHKLLTKQGLA 240 EVPKKLGVIGAGVIGLEMGSVWRRLGAEVTVLEALPTFLGAVDEQIAKEA KLLTKQGLA Sbjct: 181 EVPKKLGVIGAGVIGLEMGSVWRRLGAEVTVLEALPTFLGAVDEQIAKEAQKLLTKQGLA 240 Query: 241 VNLGVKIGAIKTGKNSVSVEYTDAKGEAHTGEFDKLIISIGRTPNTIGLNAEGVGLKLDE 300 VNLGVKIGAIK GKNSVSVEYTDAKG+AHTGEFDKLI+SIGRTPNTIGLNAEGVGLKLDE Sbjct: 241 VNLGVKIGAIKAGKNSVSVEYTDAKGDAHTGEFDKLIVSIGRTPNTIGLNAEGVGLKLDE 300 Query: 301 RGFIAVDGDCKTNLPNVWAVGDVVRGPMLAHKAEEEGVAVAERIAGQHGHVNFNTIPWVI 360 RGFIAVDGDCKTNLPNVWAVGDVVRGPMLAHKAEEEGVAVAERIAGQHGHVNFNTIPWVI Sbjct: 301 RGFIAVDGDCKTNLPNVWAVGDVVRGPMLAHKAEEEGVAVAERIAGQHGHVNFNTIPWVI 360 Query: 361 YTSPEIAWVGKTEQQLKAEGVQYKAGTFPFLANGRARALGDTSGMVKFLADAKTDEILGV 420 YTSPEIAWVGKTEQQLKAEGVQYKAGTFPFLANGRARALGDTSGMVKFLADAKTDEILGV Sbjct: 361 YTSPEIAWVGKTEQQLKAEGVQYKAGTFPFLANGRARALGDTSGMVKFLADAKTDEILGV 420 Query: 421 HIVGPMASELISEAVVAMEFRASSEDIARICHAHPSLSEATKEAALAVDKRALNF 475 HIVGPMASELISEAVVAMEFRASSEDIARICHAHPSLSEATKEAALAVDKRALNF Sbjct: 421 HIVGPMASELISEAVVAMEFRASSEDIARICHAHPSLSEATKEAALAVDKRALNF 475 >ref|YP_004752409.1| dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase [Collimonas fungivorans Ter331] gb|AEK61586.1| Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase [Collimonas fungivorans Ter331] Length = 477 Score = 805 bits (2079), Expect = 0.0, Method: Composition-based stats. Identities = 426/475 (89%), Positives = 445/475 (93%) Query: 1 MSKNFDVVVIGGGPGGYIAAIRAAQLGFNTACIDEWKNQKGGPAPGGTCTNVGCIPSKAL 60 MSK FDVVVIGGGPGGYIAAIRAAQLGFNTACIDEWKN K GPAPGGTCTNVGCIPSKAL Sbjct: 3 MSKQFDVVVIGGGPGGYIAAIRAAQLGFNTACIDEWKNAKNGPAPGGTCTNVGCIPSKAL 62 Query: 61 LQSSEHYEHASHGFAEHGIEVKGLGLNLEKMLGRKNTVVKQNNDGILYLFKKNKVAFFHG 120 LQSSEHYEHA H FA+HGIEVKGLGLNL +ML RK++VVKQNN+GILYLFKKNKV FFHG Sbjct: 63 LQSSEHYEHAGHAFADHGIEVKGLGLNLGQMLARKDSVVKQNNEGILYLFKKNKVTFFHG 122 Query: 121 RGSFVKGDANGYEIKVAGAAEETITAKHVIVATGSNARALPGAEFDEKLILSNTGALAIS 180 RGSFVKGDA+ YEIKVAGAAEETITAKH+I+ATGSN RALPG FDEKLILSNTGALAI Sbjct: 123 RGSFVKGDASAYEIKVAGAAEETITAKHIILATGSNPRALPGTPFDEKLILSNTGALAID 182 Query: 181 EVPKKLGVIGAGVIGLEMGSVWRRLGAEVTVLEALPTFLGAVDEQIAKEAHKLLTKQGLA 240 VP KLGVIGAGVIGLEMGSVWRRLG++V+VLEALPTFLGAVDEQIAKEA KL TKQGL Sbjct: 183 AVPAKLGVIGAGVIGLEMGSVWRRLGSDVSVLEALPTFLGAVDEQIAKEASKLFTKQGLK 242 Query: 241 VNLGVKIGAIKTGKNSVSVEYTDAKGEAHTGEFDKLIISIGRTPNTIGLNAEGVGLKLDE 300 V+LGVKIGAI GKN V+VEY DA G A +DKLI+SIGR PNTIGLNAEGVGL+LDE Sbjct: 243 VSLGVKIGAITAGKNDVTVEYVDAAGAAQKAVYDKLIVSIGRIPNTIGLNAEGVGLQLDE 302 Query: 301 RGFIAVDGDCKTNLPNVWAVGDVVRGPMLAHKAEEEGVAVAERIAGQHGHVNFNTIPWVI 360 RGFIAVDGDCKTNLPNVWAVGDVVRGPMLAHKAEEEGVAVAERIAGQHGHVNFNTIPWVI Sbjct: 303 RGFIAVDGDCKTNLPNVWAVGDVVRGPMLAHKAEEEGVAVAERIAGQHGHVNFNTIPWVI 362 Query: 361 YTSPEIAWVGKTEQQLKAEGVQYKAGTFPFLANGRARALGDTSGMVKFLADAKTDEILGV 420 YTSPEIAWVGKTEQQLKA+GV YKAGTFPFLANGRARALGDTSGMVKFLADAKTDEILGV Sbjct: 363 YTSPEIAWVGKTEQQLKADGVAYKAGTFPFLANGRARALGDTSGMVKFLADAKTDEILGV 422 Query: 421 HIVGPMASELISEAVVAMEFRASSEDIARICHAHPSLSEATKEAALAVDKRALNF 475 HIVGPMASELISEAVVAMEFRAS+EDIARICHAHPSLSEATKEAALAVDKR+LNF Sbjct: 423 HIVGPMASELISEAVVAMEFRASAEDIARICHAHPSLSEATKEAALAVDKRSLNF 477 >ref|YP_001353204.1| dihydrolipoamide dehydrogenase [Janthinobacterium sp. Marseille] gb|ABR88869.1| dihydrolipoamide dehydrogenase [Janthinobacterium sp. Marseille] Length = 475 Score = 790 bits (2039), Expect = 0.0, Method: Composition-based stats. Identities = 405/475 (85%), Positives = 432/475 (90%) Query: 1 MSKNFDVVVIGGGPGGYIAAIRAAQLGFNTACIDEWKNQKGGPAPGGTCTNVGCIPSKAL 60 MSKNFDVVVIG GPGGY+AAIRAAQLGF ACIDEWKN+KGGPAPGGTCTNVGCIPSKA+ Sbjct: 1 MSKNFDVVVIGAGPGGYVAAIRAAQLGFTVACIDEWKNEKGGPAPGGTCTNVGCIPSKAM 60 Query: 61 LQSSEHYEHASHGFAEHGIEVKGLGLNLEKMLGRKNTVVKQNNDGILYLFKKNKVAFFHG 120 LQSSE+Y HA H FAEHGIEVKGL LN++KM+ RK+TVVKQNNDGILYLFKKNKV FFHG Sbjct: 61 LQSSENYHHAGHAFAEHGIEVKGLSLNVKKMVARKDTVVKQNNDGILYLFKKNKVTFFHG 120 Query: 121 RGSFVKGDANGYEIKVAGAAEETITAKHVIVATGSNARALPGAEFDEKLILSNTGALAIS 180 RGSFVK G+EIK+AGA EE I AKHV+VATGSN RALPGA FDEKLILSNTGAL I+ Sbjct: 121 RGSFVKAADGGHEIKIAGATEENIFAKHVVVATGSNPRALPGAAFDEKLILSNTGALEIT 180 Query: 181 EVPKKLGVIGAGVIGLEMGSVWRRLGAEVTVLEALPTFLGAVDEQIAKEAHKLLTKQGLA 240 EVPK+LGVIGAGVIGLEMGSVWRRLG+EVTVLEALP FLGAVD+ +AKEA K TKQGLA Sbjct: 181 EVPKRLGVIGAGVIGLEMGSVWRRLGSEVTVLEALPAFLGAVDDAVAKEAFKQFTKQGLA 240 Query: 241 VNLGVKIGAIKTGKNSVSVEYTDAKGEAHTGEFDKLIISIGRTPNTIGLNAEGVGLKLDE 300 ++LGV+IGAI GKN V+V Y D KG A FDKLI+SIGR PNTIGLNAE VGLKLDE Sbjct: 241 ISLGVQIGAITAGKNDVTVNYVDDKGAAQKAVFDKLIVSIGRVPNTIGLNAEAVGLKLDE 300 Query: 301 RGFIAVDGDCKTNLPNVWAVGDVVRGPMLAHKAEEEGVAVAERIAGQHGHVNFNTIPWVI 360 RGFIAVD DCKT+LPNVWAVGDVVRGPMLAHK+EEEGVAVAERIAGQHGHVNFNTIPWVI Sbjct: 301 RGFIAVDADCKTSLPNVWAVGDVVRGPMLAHKSEEEGVAVAERIAGQHGHVNFNTIPWVI 360 Query: 361 YTSPEIAWVGKTEQQLKAEGVQYKAGTFPFLANGRARALGDTSGMVKFLADAKTDEILGV 420 YTSPEIAWVGKTEQQLKAE + YKAG+FPFLANGRARALGDT+G VKFLADAKTDEILGV Sbjct: 361 YTSPEIAWVGKTEQQLKAEKIAYKAGSFPFLANGRARALGDTTGFVKFLADAKTDEILGV 420 Query: 421 HIVGPMASELISEAVVAMEFRASSEDIARICHAHPSLSEATKEAALAVDKRALNF 475 HI+GPMASELISEAVVAMEFRASSEDIARICHAHPSLSEA KEAALAVD RALNF Sbjct: 421 HIIGPMASELISEAVVAMEFRASSEDIARICHAHPSLSEAVKEAALAVDGRALNF 475 >ref|ZP_08273501.1| Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase [Oxalobacteraceae bacterium IMCC9480] gb|EGF33042.1| Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase [Oxalobacteraceae bacterium IMCC9480] Length = 499 Score = 771 bits (1991), Expect = 0.0, Method: Composition-based stats. Identities = 402/475 (84%), Positives = 431/475 (90%) Query: 1 MSKNFDVVVIGGGPGGYIAAIRAAQLGFNTACIDEWKNQKGGPAPGGTCTNVGCIPSKAL 60 MSKNFDVVVIGGGPGGYIAAIRAAQLGF+ ACIDEWKN GGPAPGGTCTNVGCIPSKAL Sbjct: 25 MSKNFDVVVIGGGPGGYIAAIRAAQLGFSVACIDEWKNAAGGPAPGGTCTNVGCIPSKAL 84 Query: 61 LQSSEHYEHASHGFAEHGIEVKGLGLNLEKMLGRKNTVVKQNNDGILYLFKKNKVAFFHG 120 LQSSEH+EHA H FAEHGI+VKGL LNL +ML RK+TVVKQNNDGILYLFKKNK+ FFHG Sbjct: 85 LQSSEHFEHAGHAFAEHGIDVKGLSLNLPQMLSRKDTVVKQNNDGILYLFKKNKITFFHG 144 Query: 121 RGSFVKGDANGYEIKVAGAAEETITAKHVIVATGSNARALPGAEFDEKLILSNTGALAIS 180 RG+FVK DA+G E+ V G E++ AKHV++ATGSNARALPG FDEK+ILSNTGALAI Sbjct: 145 RGAFVKNDASGTEVSVTGKTNESLIAKHVVIATGSNARALPGTPFDEKMILSNTGALAIG 204 Query: 181 EVPKKLGVIGAGVIGLEMGSVWRRLGAEVTVLEALPTFLGAVDEQIAKEAHKLLTKQGLA 240 VPK+LGVIGAGVIGLEMGSVWRRLG+ VTVLE LPTFLGAVDEQIAKEA KL TKQGL Sbjct: 205 AVPKRLGVIGAGVIGLEMGSVWRRLGSAVTVLEGLPTFLGAVDEQIAKEAFKLFTKQGLG 264 Query: 241 VNLGVKIGAIKTGKNSVSVEYTDAKGEAHTGEFDKLIISIGRTPNTIGLNAEGVGLKLDE 300 + LGVKIG I TGK V+VEY DAKGEA FDKLIISIGRTPNTIGLNAE +GLKLDE Sbjct: 265 IQLGVKIGTITTGKKDVTVEYVDAKGEAQKAVFDKLIISIGRTPNTIGLNAEAIGLKLDE 324 Query: 301 RGFIAVDGDCKTNLPNVWAVGDVVRGPMLAHKAEEEGVAVAERIAGQHGHVNFNTIPWVI 360 RGF+ VD DCK+++ NVWAVGDVVRGPMLAHKAEEEGVAVAERIAGQHGHVNFNT+PWVI Sbjct: 325 RGFVVVDDDCKSSVANVWAVGDVVRGPMLAHKAEEEGVAVAERIAGQHGHVNFNTVPWVI 384 Query: 361 YTSPEIAWVGKTEQQLKAEGVQYKAGTFPFLANGRARALGDTSGMVKFLADAKTDEILGV 420 YTSPEIAWVGK EQ+LKA GV YKAG+FPFLANGRARALGDT+GMVKFLADAKTDEILGV Sbjct: 385 YTSPEIAWVGKNEQELKAAGVAYKAGSFPFLANGRARALGDTNGMVKFLADAKTDEILGV 444 Query: 421 HIVGPMASELISEAVVAMEFRASSEDIARICHAHPSLSEATKEAALAVDKRALNF 475 HI+GP ASELISEAVVAMEFRAS+EDIARICHAHPSLSEATKEAALAVDKRALNF Sbjct: 445 HIIGPSASELISEAVVAMEFRASAEDIARICHAHPSLSEATKEAALAVDKRALNF 499 >ref|YP_982089.1| dihydrolipoamide dehydrogenase [Polaromonas naphthalenivorans CJ2] gb|ABM37168.1| dihydrolipoamide dehydrogenase [Polaromonas naphthalenivorans CJ2] Length = 489 Score = 764 bits (1974), Expect = 0.0, Method: Composition-based stats. Identities = 400/475 (84%), Positives = 425/475 (89%) Query: 1 MSKNFDVVVIGGGPGGYIAAIRAAQLGFNTACIDEWKNQKGGPAPGGTCTNVGCIPSKAL 60 MSK FDV+VIGGGPGGYIAAIRAAQLGFN ACIDEWKN KGGPA GGTCTN+GCIPSKAL Sbjct: 15 MSKQFDVIVIGGGPGGYIAAIRAAQLGFNVACIDEWKNAKGGPALGGTCTNIGCIPSKAL 74 Query: 61 LQSSEHYEHASHGFAEHGIEVKGLGLNLEKMLGRKNTVVKQNNDGILYLFKKNKVAFFHG 120 LQSSE+YEHA H FA+HGIEVKGLGL++ KM+GRK+TVVKQNNDGI+YLFKKNKVAFFHG Sbjct: 75 LQSSEYYEHAGHHFADHGIEVKGLGLDVAKMVGRKDTVVKQNNDGIIYLFKKNKVAFFHG 134 Query: 121 RGSFVKGDANGYEIKVAGAAEETITAKHVIVATGSNARALPGAEFDEKLILSNTGALAIS 180 RGSF Y+IKVAG AEETI+ KH+IVATGSNARALPG FDE ILSN GAL I Sbjct: 135 RGSFAAAKDGAYDIKVAGTAEETISGKHIIVATGSNARALPGTPFDEVNILSNDGALRIG 194 Query: 181 EVPKKLGVIGAGVIGLEMGSVWRRLGAEVTVLEALPTFLGAVDEQIAKEAHKLLTKQGLA 240 VP+KLGVIG+GVIGLEMGSVWRRLGAEVT+LE LPTFLGAVD+QIAKEAHK TKQGL Sbjct: 195 AVPQKLGVIGSGVIGLEMGSVWRRLGAEVTILEGLPTFLGAVDQQIAKEAHKAFTKQGLK 254 Query: 241 VNLGVKIGAIKTGKNSVSVEYTDAKGEAHTGEFDKLIISIGRTPNTIGLNAEGVGLKLDE 300 + LGV++G IK GK VS+ Y +AKGEA T E DKLIISIGRT NTIGLN E VGL LDE Sbjct: 255 IELGVQVGEIKNGKTGVSIAYANAKGEAQTLEVDKLIISIGRTANTIGLNPEAVGLSLDE 314 Query: 301 RGFIAVDGDCKTNLPNVWAVGDVVRGPMLAHKAEEEGVAVAERIAGQHGHVNFNTIPWVI 360 RG I VDGDCKTNLPNVWAVGDVVRGPMLAHKAEEEGVAVAERIAGQHGHVNFNTIPWVI Sbjct: 315 RGAIVVDGDCKTNLPNVWAVGDVVRGPMLAHKAEEEGVAVAERIAGQHGHVNFNTIPWVI 374 Query: 361 YTSPEIAWVGKTEQQLKAEGVQYKAGTFPFLANGRARALGDTSGMVKFLADAKTDEILGV 420 YTSPEIAWVG+TE+QLKAEG YKAGTFPF+ANGRARALGDT+GMVK LADA TDEILGV Sbjct: 375 YTSPEIAWVGQTEEQLKAEGRAYKAGTFPFMANGRARALGDTTGMVKMLADAATDEILGV 434 Query: 421 HIVGPMASELISEAVVAMEFRASSEDIARICHAHPSLSEATKEAALAVDKRALNF 475 HIVGPMASELISE VVAMEFRASSEDIARICHAHPSLSEATKEAALAVDKR LNF Sbjct: 435 HIVGPMASELISECVVAMEFRASSEDIARICHAHPSLSEATKEAALAVDKRTLNF 489