BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3474.p (333 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776359.1| hypothetical protein Hsero_2963 [Herbaspiril... 512 e-143 ref|ZP_08273822.1| hypothetical protein IMCC9480_2092 [Oxalobact... 206 4e-51 ref|ZP_08505337.1| Putative Type IV pilus assembly PilZ [Methylo... 157 2e-36 ref|YP_003846421.1| type IV pilus assembly PilZ [Gallionella cap... 137 3e-30 gb|EGW61614.1| type IV pilus assembly PilZ [Dechlorosoma suillum... 123 4e-26 >ref|YP_003776359.1| hypothetical protein Hsero_2963 [Herbaspirillum seropedicae SmR1] gb|ADJ64451.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 315 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 265/315 (84%), Positives = 298/315 (94%) Query: 19 MADHTSLVPVRASELALGRPAPWPIYNDAGKLLLARGTLIDTPDQLAGLIEYGLYRNANW 78 MADHTSLVPVRA+EL LG+PAPWPIYN+ GKLLLARGT+IDTPDQLAGLIE GLYRNA W Sbjct: 1 MADHTSLVPVRATELVLGKPAPWPIYNEVGKLLLARGTMIDTPDQLAGLIENGLYRNARW 60 Query: 79 IAEPDTESVPLPQARDVLRKKQGGKKTLKPSAAVRGQETIITLDEVRWQIGDTLWLQFAD 138 +AEPDTESVPLPQARDVLRKK GGK+ +KP+AA RGQ+T+IT++EVRWQIGDTLWLQ A+ Sbjct: 61 VAEPDTESVPLPQARDVLRKKVGGKRPVKPAAAARGQQTVITMEEVRWQIGDTLWLQLAE 120 Query: 139 DAAQRYAVSLVGCLPNRSILVTAPQKEGKQLFVREGQGFVVRALTGRRAYAFAAQLLKYQ 198 DAAQRYAV+LVGCLP RSILVTAPQK+GKQLF+R+GQ FVVRALTGRRAYAF++QLLKYQ Sbjct: 121 DAAQRYAVNLVGCLPGRSILVTAPQKDGKQLFMRDGQAFVVRALTGRRAYAFSSQLLKYQ 180 Query: 199 QTPFVYLHLSLPKEVRSTVIRQATRVPVGAEGYLAVDGSQPLAASVIDLSLAGASLVATS 258 QTPFVYLHL++P+EVRSTVIRQATRVPVGAEGYL VDG+ P+AASVIDLSLAGASLVATS Sbjct: 181 QTPFVYLHLAMPREVRSTVIRQATRVPVGAEGYLEVDGNTPVAASVIDLSLAGASLVATS 240 Query: 259 LSGKVAAKKGVTGQLRFVASVADQQLPLELPVVLRTVESLGEADFHQYGVEFAQLTVRDK 318 LSG+VAA+KGV G+LRFVASVADQQL L+L VVLRTVE+LGEADF+QYGVEF+ +TVRDK Sbjct: 241 LSGRVAAQKGVVGRLRFVASVADQQLTLDLRVVLRTVEALGEADFYQYGVEFSNMTVRDK 300 Query: 319 LVLSAYVYQELTLQE 333 LVLSAYVYQEL+ QE Sbjct: 301 LVLSAYVYQELSAQE 315 >ref|ZP_08273822.1| hypothetical protein IMCC9480_2092 [Oxalobacteraceae bacterium IMCC9480] gb|EGF32708.1| hypothetical protein IMCC9480_2092 [Oxalobacteraceae bacterium IMCC9480] Length = 306 Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats. Identities = 120/312 (38%), Positives = 187/312 (59%), Gaps = 12/312 (3%) Query: 19 MADHTSLVPVRASELALGRPAPWPIYNDAGKLLLARGTLIDTPDQLAGLIEYGLYRNANW 78 M++ +LVPVRASE+ +G+ +Y+ G LLLA G +ID Q+AG++E G + W Sbjct: 1 MSESVALVPVRASEIVVGKALTRSVYDYHGNLLLASGFVIDNASQMAGVLENGYFHEGGW 60 Query: 79 IAEPDTESVPLPQARDVLRKKQGGKKTLKPSAAVRGQETIITLDEVRWQIGDTLWLQFAD 138 + + P+P +++ R + KP AA R E + + +VRW IG+T+ LQ D Sbjct: 61 ----ERPAGPVPADQNIKRLVEATAAP-KPEAAER--EIAVNMQDVRWNIGETMILQMQD 113 Query: 139 DAAQRYAVSLVGCLPNRSILVTAPQKEGKQLFVREGQGFVVRALTGRRAYAFAAQLLKYQ 198 + RY V L+G + +++ VTAP +GK +R+GQ FVVRA +G++AYAF A ++ Sbjct: 114 KPSIRYTVKLIGFVKGKTVYVTAPTMDGKFELIRDGQSFVVRAFSGKKAYAFIAAAVRSV 173 Query: 199 QTPFVYLHLSLPKEVRSTVIRQATRVPVGAEGYLAV-DGSQPLAASVIDLSLAGASLVAT 257 TP YLHLS PK++R TV+RQ RV V +++ + + AA++ DLS+ GAS +A Sbjct: 174 HTPHPYLHLSYPKQLRCTVVRQTARVAVRLIAAVSLGEPERSSAATITDLSMGGASAIAK 233 Query: 258 SLSGKVAAKKGVTGQLRFVASVADQQLPLELPVVLRTVESLGEADFHQYGVEFAQLTVRD 317 + G KG G+++ VA+Q L L L VLR++ + ++G EF ++V+D Sbjct: 234 EILG----VKGEAGRIKLKVHVAEQDLFLNLQTVLRSIAPADVGEGFRHGFEFVDVSVQD 289 Query: 318 KLVLSAYVYQEL 329 +LVL+AYV+Q L Sbjct: 290 RLVLTAYVHQTL 301 >ref|ZP_08505337.1| Putative Type IV pilus assembly PilZ [Methyloversatilis universalis FAM5] gb|EGK71013.1| Putative Type IV pilus assembly PilZ [Methyloversatilis universalis FAM5] Length = 298 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 104/309 (33%), Positives = 164/309 (53%), Gaps = 22/309 (7%) Query: 25 LVPVRASELALGRPAPWPIYNDAGKLLLARGTLIDTPDQLAGLIEYGLYRNANWIAEPDT 84 ++PVR +++ LG+P P+ +Y+ KLLL G ++ T +QL L E GLYR D Sbjct: 1 MIPVRKTDVVLGKPLPYSLYDQNNKLLLKAGVIVQTQNQLDVLSERGLYR--------DR 52 Query: 85 ESVPLPQARDVLRKKQGGKKTLKPSAAVRGQETIITLDEVRWQIGDTLWLQFADDAAQRY 144 + +PQ + G+ T +P AA ++ L+++R QIGDTL LQ A + QR+ Sbjct: 53 VAANMPQV-----TARAGQDT-EPKAASDKDGILLELEDIRMQIGDTLQLQAAGEDGQRH 106 Query: 145 AVSLVGCLPNRSILVTAPQKEGKQLFVREGQGFVVRALTGRRAYAFAAQLLKYQQTPFVY 204 V L+G RS++VT P +G V++ FVVR +G+ YAF + +LK TPF Y Sbjct: 107 TVKLLGYAKGRSVMVTPPMIDGAYAIVKQDAAFVVRFFSGKSVYAFPSHVLKMANTPFPY 166 Query: 205 LHLSLPKEVRSTVIRQATRVPVGAEGYLAVDGSQPLAASVIDLSLAGASLVATSLSGKVA 264 LHLS PK+VR +R+A R V + A +++D+S G+ + A + G Sbjct: 167 LHLSYPKKVRGMRVRRAQRASVKLITAVTDMYGALYAGTMLDISKGGSLMAAKTAIGGA- 225 Query: 265 AKKGVTGQLRFVASVADQQLPLELPVVLRTVE----SLGEADFHQYGVEFAQLTVRDKLV 320 G QL+F D + + +R+V+ + EA +G+EF ++ D+L Sbjct: 226 ---GDEIQLKFRLQFDDIDQFVHVKAAIRSVQRNPDAESEALTFNHGLEFVEVQESDRLA 282 Query: 321 LSAYVYQEL 329 L+A+ YQ+L Sbjct: 283 LAAFTYQKL 291 >ref|YP_003846421.1| type IV pilus assembly PilZ [Gallionella capsiferriformans ES-2] gb|ADL54657.1| type IV pilus assembly PilZ [Gallionella capsiferriformans ES-2] Length = 296 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 92/310 (29%), Positives = 154/310 (49%), Gaps = 30/310 (9%) Query: 27 PVRASELALGRPAPWPIYNDAGKLLLARGTLIDTPDQLAGLIEYGLYRNANWIAEPDTES 86 PV+A+++ LG P W +Y+ G LLL G ++++ QL GLIE GL+R + + Sbjct: 7 PVKAADIPLGIPLAWSVYDKHGHLLLREGVMVESQRQLDGLIENGLFRERRSVHVARKTA 66 Query: 87 VPLPQARDVLRKKQGGKKTLKPSAAVRGQETIITLDEVRWQIGDTLWLQFADDAAQRYAV 146 V P A + + L V+ IGDT+ LQ QRY V Sbjct: 67 VADPD-----------------EAKSKSPDKTEDLLSVKLVIGDTIQLQDFSSDKQRYFV 109 Query: 147 SLVGCLPNRSILVTAPQKEGKQLFVREGQGFVVRALTGRRAYAFAAQLLKYQQTPFVYLH 206 L+G + +S+LV+ P+++ K F++EG GF+VR G + + F++ ++ TP+ YLH Sbjct: 110 KLIGFMNKKSVLVSHPRQDEKLSFIKEGHGFMVRGFAGTKTFEFSSNVISVCLTPYPYLH 169 Query: 207 LSLPKEVRSTVIRQATRVP---VGAEGYLAVDGSQPLAASVIDLSLAGASLVATSLSGKV 263 L+ P +V++T +R+A R+ V + A+ G P A + D+S++GA + A G+V Sbjct: 170 LAFPPQVKTTCMRKAVRIKLKLVCSVESPALGGKLP--AIIEDMSISGARIQAAKSFGQV 227 Query: 264 AAKKGVTGQLRFVASVADQQLPLELPVVLRTV----ESLGEADFHQYGVEFAQLTVRDKL 319 G T + VA + + V+R V +S +G+EF Q D Sbjct: 228 ----GDTVSVSLRMQVAGETQVFLVSSVIRNVHVENDSKSGESIVMHGMEFVQTLSVDLT 283 Query: 320 VLSAYVYQEL 329 +L ++Y+ + Sbjct: 284 LLQNFIYKSM 293 >gb|EGW61614.1| type IV pilus assembly PilZ [Dechlorosoma suillum PS] Length = 243 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 86/231 (37%), Positives = 130/231 (56%), Gaps = 20/231 (8%) Query: 116 ETIITLDEVRWQIGDTLWLQFADDA-AQRYAVSLVGCLPNRSILVTAPQKEGKQLFVREG 174 E + LDE R QIGD L LQ DA A R+ V L+G S+LV+ P+ +G +FVR+G Sbjct: 17 ENRVNLDEARLQIGDALQLQPNGDANAARHYVKLIGFTKGASVLVSTPKVDGAYIFVRDG 76 Query: 175 QGFVVRALTGRRAYAFAAQLLKYQQTPFVYLHLSLPKEVRSTVIRQATRVPVG------- 227 Q +VVRA +G+ AYAF+ +++ P+ YLHLS PK+VR+ V+R+ R V Sbjct: 77 QNYVVRAFSGKNAYAFSTTVVRSVAVPYPYLHLSYPKDVRALVVRRGARAKVNLIASARR 136 Query: 228 --AEGYLAVDGSQPLAASVIDLSLAGASLVATSLSGKVAAKKGVTGQLRFVASVADQQLP 285 A+G + D AAS+ ++S++GA L + G +G + +L F ++AD Sbjct: 137 LDAQGQESPDAC---AASIRNVSISGAMLASPHPLG----LQGDSIRLSFKIALADIISL 189 Query: 286 LELPVVLRTVESLGE---ADFHQYGVEFAQLTVRDKLVLSAYVYQELTLQE 333 + L V+R V GE YG+EF +D++ L+A+VYQ+L Q+ Sbjct: 190 VTLDAVIRAVNPGGEDLGPGMIGYGLEFVGGEAQDRITLTAFVYQKLLEQD 240