BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3470.p (327 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776356.1| NlpD precursor lipoprotein [Herbaspirillum s... 413 e-113 ref|YP_004752563.1| lipoprotein [Collimonas fungivorans Ter331] ... 313 2e-83 ref|YP_001353825.1| lipoprotein nlpD precursor [Janthinobacteriu... 313 2e-83 ref|YP_001099558.1| lipoprotein precursor [Herminiimonas arsenic... 302 5e-80 gb|EGW60452.1| Peptidase M23 [Dechlorosoma suillum PS] 229 5e-58 >ref|YP_003776356.1| NlpD precursor lipoprotein [Herbaspirillum seropedicae SmR1] gb|ADJ64448.1| NlpD precursor lipoprotein [Herbaspirillum seropedicae SmR1] Length = 332 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 272/333 (81%), Positives = 290/333 (87%), Gaps = 7/333 (2%) Query: 1 MKKIRLAVLGSVVSLLAACGSTPNQQSAPVVERTSSTAKPADAAAAPVVPAPSGRGYYTV 60 MKKIRLAVLGSVVSLLAACGSTPNQQ APVVERTSST K DAA AP PAPSGRGYYTV Sbjct: 1 MKKIRLAVLGSVVSLLAACGSTPNQQPAPVVERTSSTGKVVDAATAPAAPAPSGRGYYTV 60 Query: 61 KKGDTLYRIALDVGQNWRDIVAWNNLTNPNDIKVDQVLRVAPPDRA-GPAQTATVAAAPG 119 KKGDTLYRIAL+ GQNWRDIVAWNNLTNPNDIKVDQ LRVAPPDRA G AQTA +AA+P Sbjct: 61 KKGDTLYRIALEAGQNWRDIVAWNNLTNPNDIKVDQTLRVAPPDRAPGTAQTAAIAASPA 120 Query: 120 AGLDVKPLGAPGAAAPAAAPMASGSNKTGPRGDKRAYSESALAELEKPDAAPAAAPAAAP 179 AGL+VKPLGAPG +APAA P+ GSNKTGPRGDKR YSESALAELEKPDA A A + Sbjct: 121 AGLEVKPLGAPGTSAPAA-PVPVGSNKTGPRGDKRPYSESALAELEKPDAPSAPAASGTS 179 Query: 180 AAVAKPEAPHAADKP-----AAASQAPVASDDEGVTWMWPADGKVVGTFEGGKKGVDIAG 234 A A P AP A++P AA+ + A+DDEGV+WMWPA+GKVVGTFEGGKKGVDIAG Sbjct: 180 VASAAPSAPAKAEQPHAADKPAAAASQAAADDEGVSWMWPAEGKVVGTFEGGKKGVDIAG 239 Query: 235 KDGQAVLAAAGGKVMYAGSGIRGYGNLVIIKHTNNLLSAYAHNKTILVKEGQAVTKGQKI 294 K GQAVLAA GKVMYAGSGIRGYGNLVIIKHT+NLLSAYAHN+TILVKEGQ+VTKGQKI Sbjct: 240 KAGQAVLAAGAGKVMYAGSGIRGYGNLVIIKHTSNLLSAYAHNQTILVKEGQSVTKGQKI 299 Query: 295 AEMGKSDSDSVKLHFEIRQQGKPVDPSKYLPPR 327 AEMGKSDSD+VKLHFEIRQQGKPVDPSKYLPPR Sbjct: 300 AEMGKSDSDTVKLHFEIRQQGKPVDPSKYLPPR 332 >ref|YP_004752563.1| lipoprotein [Collimonas fungivorans Ter331] gb|AEK61740.1| lipoprotein precursor [Collimonas fungivorans Ter331] Length = 324 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 208/329 (63%), Positives = 241/329 (73%), Gaps = 9/329 (2%) Query: 1 MKKIRLAVLGSVVSLLAACGSTPNQQSAPVVERTSSTAKPADAAAAPVVP-APSGRGYYT 59 MKK R LG +V LAAC T + APVVER + AAAP P A GRG YT Sbjct: 3 MKKTRFIALGLMVGALAAC--TTPRTPAPVVERRPGGSGAVATAAAPETPRAAEGRGSYT 60 Query: 60 VKKGDTLYRIALDVGQNWRDIVAWNNLTNPNDIKVDQVLRVAPPDR-AGPAQTATVAAAP 118 VK+GDTLYRIAL+ GQ++RDIVAWN L N NDIKV QVLRV PPD +GP A Sbjct: 61 VKQGDTLYRIALEFGQSYRDIVAWNKLDNANDIKVGQVLRVQPPDSGSGPGGAQIGTVAT 120 Query: 119 GAGLDVKPLGAPGAAAPAAAPMASGSNKTGPRGDKRAYSESALAELEKPDAAPAAAPAAA 178 G+G++V+ LG+ +AA A+ G NK+GPRGDKR YS+SALAEL+KPDA P++ Sbjct: 121 GSGVEVRSLGSAPSAAAVAS----GGNKSGPRGDKRPYSDSALAELQKPDAGPSSETPKP 176 Query: 179 PAAVAKPEAPHAADKPAAASQAPVASDDEGVTWMWPADGKVVGTFEGGKKGVDIAGKDGQ 238 A A AA A++ AP + D++ V WMWPA+GK VG F+ GKKG+DIAGK GQ Sbjct: 177 AATPAVTAPA-AAAASTASTAAPASGDEDKVDWMWPAEGKQVGAFDQGKKGIDIAGKAGQ 235 Query: 239 AVLAAAGGKVMYAGSGIRGYGNLVIIKHTNNLLSAYAHNKTILVKEGQAVTKGQKIAEMG 298 V+AAAGGKVMYAGSGIRGYGNLVIIKHT+NLLSAYAHNKTILVKEGQ V+KGQKIAEMG Sbjct: 236 NVVAAAGGKVMYAGSGIRGYGNLVIIKHTSNLLSAYAHNKTILVKEGQTVSKGQKIAEMG 295 Query: 299 KSDSDSVKLHFEIRQQGKPVDPSKYLPPR 327 SDSD+VKLHFEIRQQGKPVDPSK+LP R Sbjct: 296 NSDSDAVKLHFEIRQQGKPVDPSKFLPSR 324 >ref|YP_001353825.1| lipoprotein nlpD precursor [Janthinobacterium sp. Marseille] gb|ABR89363.1| lipoprotein nlpD precursor [Janthinobacterium sp. Marseille] Length = 317 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 202/327 (61%), Positives = 238/327 (72%), Gaps = 20/327 (6%) Query: 5 RLAVLGSVVSLLAACGSTPNQQSAPVVERTSSTAKPADAAAAPVVPAPSGRGYYTVKKGD 64 R L S+V LL+AC ST Q SAPV ER S P AA R YTV+KGD Sbjct: 7 RQIFLISLVGLLSACSST--QNSAPVSERRISGTTPPKAAV-------EDRTTYTVRKGD 57 Query: 65 TLYRIALDVGQNWRDIVAWNNLTNPNDIKVDQVLRVAPPD----RAGPAQTATVAAAPGA 120 TLYRIALD GQ++ +IVAWNNL NPNDIKV QVLRVAPPD R+G AQT +A++ + Sbjct: 58 TLYRIALDFGQSYSEIVAWNNLANPNDIKVGQVLRVAPPDAPVARSGGAQTGAIASS--S 115 Query: 121 GLDVKPLGAPGAAAPAAAPMASGSNKTGPRGDKRAYSESALAELEKPDAAPAAAPAAAPA 180 ++ +PLGAP + +A S +NKT PRG+KR YS++ LAE++KPD+ P A A A Sbjct: 116 VVESRPLGAPSSTTVSA----SATNKTSPRGEKRPYSDATLAEMQKPDSTPVVAAAPAAT 171 Query: 181 AVAKPEAPHAADKPAAASQAPVASDDEGVTWMWPADGKVVGTFEGGKKGVDIAGKDGQAV 240 A A AA+ +A+DD+ V+W+WPA+GKVVGTF+ G+KG+DIAGK GQAV Sbjct: 172 PATATAAK-PATPAEAAAPVALAADDDSVSWIWPAEGKVVGTFDDGRKGLDIAGKSGQAV 230 Query: 241 LAAAGGKVMYAGSGIRGYGNLVIIKHTNNLLSAYAHNKTILVKEGQAVTKGQKIAEMGKS 300 LAA GKVMYAGSGIRGYGNLVI+KHT+NLLSAYAHNK ILVKEGQ V KGQKIAEMG S Sbjct: 231 LAAGAGKVMYAGSGIRGYGNLVIVKHTSNLLSAYAHNKAILVKEGQNVNKGQKIAEMGDS 290 Query: 301 DSDSVKLHFEIRQQGKPVDPSKYLPPR 327 DSDSVKLHFEIRQQGKPVDPSK+LP R Sbjct: 291 DSDSVKLHFEIRQQGKPVDPSKFLPSR 317 >ref|YP_001099558.1| lipoprotein precursor [Herminiimonas arsenicoxydans] emb|CAL61431.1| putative Peptidase M23B [Herminiimonas arsenicoxydans] Length = 304 Score = 302 bits (774), Expect = 5e-80, Method: Composition-based stats. Identities = 196/331 (59%), Positives = 236/331 (71%), Gaps = 31/331 (9%) Query: 1 MKKIRLAVLGSVVSLLAACGSTPNQQSAPVVERTSSTAKPADAAAAPVVPAPSGRGYYTV 60 MKK R+ +L +V LAACG+T ++APV ERT A A A R +YTV Sbjct: 1 MKKFRITLLVLLVGSLAACGTT--HRAAPVTERTIGGASTAKNTA-------DDRNFYTV 51 Query: 61 KKGDTLYRIALDVGQNWRDIVAWNNLTNPNDIKVDQVLRVAPPD----RAGPAQTATVAA 116 KKGDTLYRIALD GQ++ ++V WN L NPNDIKVDQVLRVAPPD R+G AQT VA Sbjct: 52 KKGDTLYRIALDFGQSYSELVTWNKLANPNDIKVDQVLRVAPPDAPAARSGGAQTGAVAT 111 Query: 117 APGAGLDVKPLGAPGAAAPAAAPMASGSNKTGPRGDKRAYSESALAELEKPDAAPAAAPA 176 G+G + +PL AP A+ + NKT PRG+KR YS+S LA+++KP+ A P Sbjct: 112 --GSGAEARPLSAPAAS--------TAGNKTSPRGEKRPYSDSTLADMQKPEGAAVTTPP 161 Query: 177 AAPAAVAKPEAPHAADKPAAASQAPVASDDEGVTWMWPADGKVVGTFEGGKKGVDIAGKD 236 A A+ KP A+ PAAA+ ++ E V+WMWPA+GK+V TF+ KKG+DIAGK Sbjct: 162 KAVASSDKP-----AEIPAAAA---TGAEYETVSWMWPAEGKLVATFDDNKKGIDIAGKS 213 Query: 237 GQAVLAAAGGKVMYAGSGIRGYGNLVIIKHTNNLLSAYAHNKTILVKEGQAVTKGQKIAE 296 GQ VLAA GKVMYAGSGIRGYGNLVI+KHT+ LLSAYAHNK I VKEGQ+V+KGQKIA+ Sbjct: 214 GQQVLAAGAGKVMYAGSGIRGYGNLVIVKHTSTLLSAYAHNKIIHVKEGQSVSKGQKIAD 273 Query: 297 MGKSDSDSVKLHFEIRQQGKPVDPSKYLPPR 327 MG SD+DSVKLHFEIRQQGKPVDPSK+LP R Sbjct: 274 MGDSDADSVKLHFEIRQQGKPVDPSKFLPSR 304 >gb|EGW60452.1| Peptidase M23 [Dechlorosoma suillum PS] Length = 302 Score = 229 bits (583), Expect = 5e-58, Method: Composition-based stats. Identities = 170/324 (52%), Positives = 201/324 (62%), Gaps = 31/324 (9%) Query: 5 RLAVLGSVVSLLAACGSTPNQQSAPVVERTSSTAKPADAAAAPVVPAPSGRGYYTVKKGD 64 R A L + +LL G + APVVER P PA + + +YTVKKGD Sbjct: 9 RAATLSGIAALLFLAGCA-SHAPAPVVER-----------GVPSKPAAASKDFYTVKKGD 56 Query: 65 TLYRIALDVGQNWRDIVAWNNLTNPNDIKVDQVLRVAPPDRAGPAQTATVAAAPGAGLDV 124 TLY IALD GQ+++D+ AWNNL NPN I V Q LRV PPD G A TA A P G V Sbjct: 57 TLYSIALDNGQDYKDVAAWNNLENPNRILVGQQLRVTPPD-GGAAGTAV--AKPIGGGVV 113 Query: 125 KPLGAPGAAAPAAAPMASGSNKTGPRGDKRAYSESALAELEKPDAAPAAAPAAAPAAVAK 184 + G PAAA S + K P+ K AYS+ A A+ + + A AA AK Sbjct: 114 ESRSLDGGPVPAAA---SDTLKREPKAGKEAYSDQAWAKAQNQNNAQGAA--------AK 162 Query: 185 PEAPHAADKPAAASQAPVASDDEGVTWMWPADGKVVGTF-EGGKKGVDIAGKDGQAVLAA 243 P P ++ PAAA+ A VTW WPA GK + F E KGVDIAGK G+ VLAA Sbjct: 163 PAEPVRSEAPAAAAAPAAAD----VTWAWPAGGKSIAGFNEATNKGVDIAGKLGEPVLAA 218 Query: 244 AGGKVMYAGSGIRGYGNLVIIKHTNNLLSAYAHNKTILVKEGQAVTKGQKIAEMGKSDSD 303 A GKV+Y+GSG+RGYG LVIIKH LSAYAHN ILVKEGQ+VT+GQKIAEMG SD+D Sbjct: 219 ADGKVVYSGSGLRGYGKLVIIKHDATFLSAYAHNNNILVKEGQSVTRGQKIAEMGNSDTD 278 Query: 304 SVKLHFEIRQQGKPVDPSKYLPPR 327 VKLHFEIR+QGKPVDP++YLP R Sbjct: 279 QVKLHFEIRRQGKPVDPTQYLPKR 302