BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3467.p (484 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776354.1| 23S rRNA (Uracil-5-)-methyltransferase [Herb... 917 0.0 ref|YP_004752565.1| 23S rRNA (uracil-5-)-methyltransferase [Coll... 723 0.0 ref|YP_001353823.1| 23S rRNA 5-methyluridine methyltransferase [... 705 0.0 ref|YP_001099560.1| 23S rRNA 5-methyluridine methyltransferase [... 696 0.0 ref|ZP_08273158.1| 23S rRNA (uracil-5-)-methyltransferase [Oxalo... 680 0.0 >ref|YP_003776354.1| 23S rRNA (Uracil-5-)-methyltransferase [Herbaspirillum seropedicae SmR1] gb|ADJ64446.1| 23S rRNA (Uracil-5-)-methyltransferase protein [Herbaspirillum seropedicae SmR1] Length = 453 Score = 917 bits (2371), Expect = 0.0, Method: Composition-based stats. Identities = 439/453 (96%), Positives = 446/453 (98%) Query: 32 MQQDIIIEIKSLDMDGRGVGHLQNEDGTQGKVIFVEGALPGERVSFQSYRKKPKWEAGVM 91 MQQDIIIEIKSLDMDGRGVGHL+NEDGTQGKVIFVEGALPGERVSFQSYRKKPKWEAGVM Sbjct: 1 MQQDIIIEIKSLDMDGRGVGHLENEDGTQGKVIFVEGALPGERVSFQSYRKKPKWEAGVM 60 Query: 92 TTLHSESSLRVKPRCDYFGTCGGCAMQHLEPSAQVAMKQRVLEDNLWHLGKTKAEVMLRP 151 TTLHSESSLRVKPRCDYFGTCGGCAMQHLEPSAQVAMKQRVLEDNLWHLGKTKAEVMLRP Sbjct: 61 TTLHSESSLRVKPRCDYFGTCGGCAMQHLEPSAQVAMKQRVLEDNLWHLGKTKAEVMLRP 120 Query: 152 IYGPTWGYRYRARISVRHVAKKGGVLVGFHEKRSSFIADMKTCEILPPNVSAMLVPLREL 211 IYGPTWGYRYRARISVRHVAKKGGVLVGFHEKRSSFIADMKTCEILPPNVSAMLVPLREL Sbjct: 121 IYGPTWGYRYRARISVRHVAKKGGVLVGFHEKRSSFIADMKTCEILPPNVSAMLVPLREL 180 Query: 212 VAVLSIRDRMPQIELAVGEGDDGNKVTVLVLRIMEALSPADETLLKTFADEHKIEWWLQT 271 VA LSIRDRMPQIELAVGEGDDGNKVTVLVLRIMEALSPADE LLK+FADEHKIEWWLQT Sbjct: 181 VAGLSIRDRMPQIELAVGEGDDGNKVTVLVLRIMEALSPADEVLLKSFADEHKIEWWLQT 240 Query: 272 KGPDTAAPYYPAESRLQYTLPEFGIRMPFKPTDFTQVNHQINRVLVARALRLLDVQPQDR 331 KGPDTAAPYYPA+SRLQYTLPEFGIRMPFKPTDFTQVNHQINRVLVARALRLLDVQPQDR Sbjct: 241 KGPDTAAPYYPAQSRLQYTLPEFGIRMPFKPTDFTQVNHQINRVLVARALRLLDVQPQDR 300 Query: 332 VADLFCGLGNFTLPIATLAREVVGIEGSTALTERALDNAKVNGVDAKTSFYCRNLFEAKP 391 VADLFCGLGNFTLPIATLAREVVGIEGSTALTERALDNAKVNGVDAKTSFYCRNLFEAKP Sbjct: 301 VADLFCGLGNFTLPIATLAREVVGIEGSTALTERALDNAKVNGVDAKTSFYCRNLFEAKP 360 Query: 392 EDFVALGKFDRILIDPPREGAMEVCKALVELPPEQQHLKPKRIVYVSCNPATLARDAGEL 451 EDFVALGKFDR+LIDPPREGAMEVCKALVELPPEQQHLKPKRIVYVSCNPATLARDAG L Sbjct: 361 EDFVALGKFDRMLIDPPREGAMEVCKALVELPPEQQHLKPKRIVYVSCNPATLARDAGML 420 Query: 452 VNLGGYRLTLAGVVNMFPHTAHVESMAVFDLAD 484 V+LGGY L AGVVNMFPHTAHVES+AVFDL + Sbjct: 421 VHLGGYALKYAGVVNMFPHTAHVESIAVFDLPE 453 >ref|YP_004752565.1| 23S rRNA (uracil-5-)-methyltransferase [Collimonas fungivorans Ter331] gb|AEK61742.1| 23S rRNA (uracil-5-)-methyltransferase [Collimonas fungivorans Ter331] Length = 449 Score = 723 bits (1865), Expect = 0.0, Method: Composition-based stats. Identities = 348/451 (77%), Positives = 386/451 (85%), Gaps = 3/451 (0%) Query: 32 MQQDIIIEIKSLDMDGRGVGHLQNEDGTQGKVIFVEGALPGERVSFQSYRKKPKWEAGVM 91 MQQD I +IKSLDMD RG+GHLQNEDG+QGKVIFVEGALPGERVSF SYRKKPKWEA M Sbjct: 1 MQQDTI-DIKSLDMDARGIGHLQNEDGSQGKVIFVEGALPGERVSFLSYRKKPKWEAATM 59 Query: 92 TTLHSESSLRVKPRCDYFGTCGGCAMQHLEPSAQVAMKQRVLEDNLWHLGKTKAEVMLRP 151 T LH ES LRVKP+C FG CGGCAMQHLEP+AQVA+KQRVLEDNLWH+GK KAE MLRP Sbjct: 60 TALHKESVLRVKPQCPVFGMCGGCAMQHLEPTAQVAIKQRVLEDNLWHIGKVKAESMLRP 119 Query: 152 IYGPTWGYRYRARISVRHVAKKGGVLVGFHEKRSSFIADMKTCEILPPNVSAMLVPLREL 211 IYGPTWGYRYRARISVR+V KKGGVLVGFHE++SSFI DMKTCEILP NVSAMLVPLR L Sbjct: 120 IYGPTWGYRYRARISVRNVPKKGGVLVGFHERKSSFITDMKTCEILPANVSAMLVPLRHL 179 Query: 212 VAVLSIRDRMPQIELAVGEGDDGNKVTVLVLRIMEALSPADETLLKTFADEHKIEWWLQT 271 + LS+ D +PQIELAVGEG G KVT LVLRIM A + DE LK FAD++++ WWLQT Sbjct: 180 IGSLSLIDHIPQIELAVGEGPQG-KVTALVLRIMAAPTADDEIKLKAFADQYQVNWWLQT 238 Query: 272 KGPDTAAPYYPAESRLQYTLPEFGIRMPFKPTDFTQVNHQINRVLVARALRLLDVQPQDR 331 GPD+A P+YPA+ L YTLPEFG+RMPFKPTDFTQVNHQINRVLVARALRLLDVQP +R Sbjct: 239 AGPDSAYPFYPAQGELYYTLPEFGVRMPFKPTDFTQVNHQINRVLVARALRLLDVQPHER 298 Query: 332 VADLFCGLGNFTLPIATLAREVVGIEGSTALTERALDNAKVNGVDAKTSFYCRNLFEAKP 391 VADLFCGLGNFTLP+AT A++VVGIEGS AL RA +NA VN + KT+F+CRNLFEA Sbjct: 299 VADLFCGLGNFTLPLATQAQQVVGIEGSQALINRAGENAAVNRLSDKTTFHCRNLFEASA 358 Query: 392 EDFVALGKFDRILIDPPREGAMEVCKALVELPPEQQHLKPKRIVYVSCNPATLARDAGEL 451 EDFVALGKFDR+LIDPPR+GA VC+ALV L L P+RIVYVSCNP+TLARDAG L Sbjct: 359 EDFVALGKFDRMLIDPPRDGAAAVCEALVGLAAIDPALMPQRIVYVSCNPSTLARDAGLL 418 Query: 452 VNLGGYRLTLAGVVNMFPHTAHVESMAVFDL 482 + GGYRL+ AGVVNMFPHTAHVES+AVFDL Sbjct: 419 I-AGGYRLSQAGVVNMFPHTAHVESIAVFDL 448 >ref|YP_001353823.1| 23S rRNA 5-methyluridine methyltransferase [Janthinobacterium sp. Marseille] gb|ABR89364.1| SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Janthinobacterium sp. Marseille] Length = 457 Score = 705 bits (1819), Expect = 0.0, Method: Composition-based stats. Identities = 335/449 (74%), Positives = 376/449 (83%), Gaps = 1/449 (0%) Query: 34 QDIIIEIKSLDMDGRGVGHLQNEDGTQGKVIFVEGALPGERVSFQSYRKKPKWEAGVMTT 93 Q II+I+SLDM+ RGVGHLQNEDGT GKV+FVEGALP ERV + SYRKK WEA M + Sbjct: 2 QQTIIDIESLDMEARGVGHLQNEDGTPGKVVFVEGALPKERVVYSSYRKKANWEAAKMMS 61 Query: 94 LHSESSLRVKPRCDYFGTCGGCAMQHLEPSAQVAMKQRVLEDNLWHLGKTKAEVMLRPIY 153 L ESSLR KP+C YFG CGGC+MQHLEPSAQVA+KQR+LEDNL H+GK KAE MLRPI+ Sbjct: 62 LIKESSLRTKPKCVYFGICGGCSMQHLEPSAQVALKQRILEDNLKHIGKVKAETMLRPIH 121 Query: 154 GPTWGYRYRARISVRHVAKKGGVLVGFHEKRSSFIADMKTCEILPPNVSAMLVPLRELVA 213 GPTWGYRYRARISVR+V KKGGVLVGFHE++SSFI DMKTCEILPPNVSAMLVPLREL+A Sbjct: 122 GPTWGYRYRARISVRNVPKKGGVLVGFHERKSSFITDMKTCEILPPNVSAMLVPLRELIA 181 Query: 214 VLSIRDRMPQIELAVGEGDDGNKVTVLVLRIMEALSPADETLLKTFADEHKIEWWLQTKG 273 LS+ D +PQIELA+G+G KVT +VLRIM LS DE LK FAD H+++WWLQ G Sbjct: 182 SLSVIDHLPQIELAIGQGAQ-EKVTAMVLRIMTELSADDEVKLKAFADLHQVQWWLQPAG 240 Query: 274 PDTAAPYYPAESRLQYTLPEFGIRMPFKPTDFTQVNHQINRVLVARALRLLDVQPQDRVA 333 PD+A +YP E+ L Y LPEF ++MPFKPTDFTQVNHQINRVLVARALRLLD QP DR+A Sbjct: 241 PDSAYQFYPTENNLHYALPEFNVKMPFKPTDFTQVNHQINRVLVARALRLLDAQPTDRIA 300 Query: 334 DLFCGLGNFTLPIATLAREVVGIEGSTALTERALDNAKVNGVDAKTSFYCRNLFEAKPED 393 DLFCGLGNFTLPIAT AREVVGIEGST LTER+L+NA NG+ KTSFYCRNLFEAK ED Sbjct: 301 DLFCGLGNFTLPIATQAREVVGIEGSTTLTERSLENAVANGLADKTSFYCRNLFEAKAED 360 Query: 394 FVALGKFDRILIDPPREGAMEVCKALVELPPEQQHLKPKRIVYVSCNPATLARDAGELVN 453 FV LGKFDR+LIDPPR+GA+ VC+AL EL Q L P RIVYVSCNP+TLARDA LVN Sbjct: 361 FVELGKFDRMLIDPPRDGALAVCEALSELGKSQPDLLPSRIVYVSCNPSTLARDAAVLVN 420 Query: 454 LGGYRLTLAGVVNMFPHTAHVESMAVFDL 482 G Y L AGV+NMFPHT+HVESMAVF+L Sbjct: 421 EGLYDLKNAGVINMFPHTSHVESMAVFEL 449 >ref|YP_001099560.1| 23S rRNA 5-methyluridine methyltransferase [Herminiimonas arsenicoxydans] emb|CAL61433.1| 23S rRNA (Uracil-5-)-methyltransferase rumA (23S rRNA(M-5-U1939)-methyltransferase) [Herminiimonas arsenicoxydans] Length = 461 Score = 696 bits (1796), Expect = 0.0, Method: Composition-based stats. Identities = 331/451 (73%), Positives = 376/451 (83%), Gaps = 1/451 (0%) Query: 34 QDIIIEIKSLDMDGRGVGHLQNEDGTQGKVIFVEGALPGERVSFQSYRKKPKWEAGVMTT 93 Q II+I+SLDM+ RGVGHLQNEDGTQGKVIFVEGALP ERV + SYRKK WEA M Sbjct: 2 QQTIIDIESLDMEARGVGHLQNEDGTQGKVIFVEGALPKERVVYSSYRKKANWEAAKMMV 61 Query: 94 LHSESSLRVKPRCDYFGTCGGCAMQHLEPSAQVAMKQRVLEDNLWHLGKTKAEVMLRPIY 153 L ESSLRV+P+C YFG CGGC+MQHLEP+AQVAMKQR+LEDNL H+GK KAE MLRPI+ Sbjct: 62 LLKESSLRVQPKCAYFGICGGCSMQHLEPTAQVAMKQRILEDNLKHIGKVKAETMLRPIH 121 Query: 154 GPTWGYRYRARISVRHVAKKGGVLVGFHEKRSSFIADMKTCEILPPNVSAMLVPLRELVA 213 GPTWGYRYRARISVR+V KKGGVLVGFHE++SSFI DMKTCEILP NVSAMLVPLR L+ Sbjct: 122 GPTWGYRYRARISVRNVPKKGGVLVGFHERKSSFITDMKTCEILPANVSAMLVPLRHLIG 181 Query: 214 VLSIRDRMPQIELAVGEGDDGNKVTVLVLRIMEALSPADETLLKTFADEHKIEWWLQTKG 273 LSI D +PQIELA+G+G+ +K+T LVLRIM LS D+ LK FADE+K++WWLQ G Sbjct: 182 SLSIIDHLPQIELAIGQGEQ-DKITALVLRIMAPLSAEDDVKLKAFADEYKVQWWLQPAG 240 Query: 274 PDTAAPYYPAESRLQYTLPEFGIRMPFKPTDFTQVNHQINRVLVARALRLLDVQPQDRVA 333 PD+A +YP + L Y+LPEFGI+MPFKPTDFTQVNHQINRVLVARALRLLD Q DR+A Sbjct: 241 PDSAYQFYPEDENLHYSLPEFGIKMPFKPTDFTQVNHQINRVLVARALRLLDAQATDRIA 300 Query: 334 DLFCGLGNFTLPIATLAREVVGIEGSTALTERALDNAKVNGVDAKTSFYCRNLFEAKPED 393 DLFCGLGNFTLPIAT A EVVGIEGST LTERAL+NA NG+ KT+FY RNLFEAK +D Sbjct: 301 DLFCGLGNFTLPIATQAGEVVGIEGSTTLTERALENAVANGLAGKTAFYSRNLFEAKTDD 360 Query: 394 FVALGKFDRILIDPPREGAMEVCKALVELPPEQQHLKPKRIVYVSCNPATLARDAGELVN 453 F+ALGKFDR+LIDPPR+GA+ VC+AL L + L P RIVYVSCNP+TLARDA LVN Sbjct: 361 FIALGKFDRMLIDPPRDGALAVCEALAGLNAVRPDLLPSRIVYVSCNPSTLARDAAVLVN 420 Query: 454 LGGYRLTLAGVVNMFPHTAHVESMAVFDLAD 484 G Y L AGVVNMFPHT+HVESMAVF+L + Sbjct: 421 EGPYVLKNAGVVNMFPHTSHVESMAVFELKE 451 >ref|ZP_08273158.1| 23S rRNA (uracil-5-)-methyltransferase [Oxalobacteraceae bacterium IMCC9480] gb|EGF33385.1| 23S rRNA (uracil-5-)-methyltransferase [Oxalobacteraceae bacterium IMCC9480] Length = 434 Score = 680 bits (1754), Expect = 0.0, Method: Composition-based stats. Identities = 327/439 (74%), Positives = 373/439 (84%), Gaps = 5/439 (1%) Query: 45 MDGRGVGHLQNEDGTQGKVIFVEGALPGERVSFQSYRKKPKWEAGVMTTLHSESSLRVKP 104 M+ RGVG+L NEDG+ GKVIFVEGALPGE+V F S+RKK KWEA MT L ES++RV P Sbjct: 1 MEARGVGNLVNEDGSHGKVIFVEGALPGEQVRFLSFRKKSKWEAARMTALVRESAMRVTP 60 Query: 105 RCDYFGTCGGCAMQHLEPSAQVAMKQRVLEDNLWHLGKTKAEVMLRPIYGPTWGYRYRAR 164 +C YFGTCGGCAMQHL+ +AQVA+KQRVLEDNLWH+GK + +MLRPIYGPTWGYRYRAR Sbjct: 61 QCAYFGTCGGCAMQHLDAAAQVAIKQRVLEDNLWHIGKVRPRLMLRPIYGPTWGYRYRAR 120 Query: 165 ISVRHVAKKGGVLVGFHEKRSSFIADMKTCEILPPNVSAMLVPLRELVAVLSIRDRMPQI 224 +SVR+V +KGGVLVGF EK+SS++ DM +C+ILPP VSA+LVPLREL+A LSI +++PQI Sbjct: 121 LSVRNVPRKGGVLVGFIEKKSSYLTDMTSCDILPPKVSALLVPLRELIAALSIVEQIPQI 180 Query: 225 ELAVGEGDDGNKVTVLVLRIMEALSPADETLLKTFADEHKIEWWLQTKGPDTAAPYYPAE 284 ELAVGEG+DG VTVLVLRIM LS ADE LLK FAD H+I WWLQ GP++A PYYPA Sbjct: 181 ELAVGEGNDG-VVTVLVLRIMAPLSRADEVLLKAFADLHQIVWWLQAAGPESAVPYYPAN 239 Query: 285 SRLQYTLPEFGIRMPFKPTDFTQVNHQINRVLVARALRLLDVQPQDRVADLFCGLGNFTL 344 LQY+LPEFGI MPFKPTDFTQVNHQINRVLVARALRLLD QP +R+ADLFCGLGNFTL Sbjct: 240 QSLQYSLPEFGITMPFKPTDFTQVNHQINRVLVARALRLLDAQPDERIADLFCGLGNFTL 299 Query: 345 PIATLAREVVGIEGSTALTERALDNAKVNGVDAKTSFYCRNLFEAKPEDFVALGKFDRIL 404 PIAT AR VVGIEGSTALT+RA+DNA+ NGV KTSF CRNLF+ D VALG FDR+L Sbjct: 300 PIATQARAVVGIEGSTALTQRAMDNARFNGVQDKTSFGCRNLFDITGADLVALGYFDRLL 359 Query: 405 IDPPREGAMEVCKALVELPPEQQHLKPKRIVYVSCNPATLARDAGELVNLGGYRLTLAGV 464 IDPPR+GAM +C+AL EL P Q KP+RIVYVSCNPATLARDA +L+ GGY L+ AGV Sbjct: 360 IDPPRDGAMALCEALAELQPAQ---KPRRIVYVSCNPATLARDA-QLLVAGGYVLSQAGV 415 Query: 465 VNMFPHTAHVESMAVFDLA 483 VNMFPHTAHVESMAVFDLA Sbjct: 416 VNMFPHTAHVESMAVFDLA 434