BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3466.p (229 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776353.1| FtsH interacting integral membrane protein [... 354 7e-96 ref|YP_004752566.1| integral membrane protein, interacts with Ft... 293 1e-77 ref|ZP_08275718.1| Integral membrane protein, interacts with Fts... 285 3e-75 ref|YP_001099561.1| hypothetical protein HEAR1259 [Herminiimonas... 285 3e-75 ref|YP_001353822.1| hypothetical protein mma_2132 [Janthinobacte... 283 1e-74 >ref|YP_003776353.1| FtsH interacting integral membrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ64445.1| FtsH interacting integral membrane protein [Herbaspirillum seropedicae SmR1] Length = 229 Score = 354 bits (908), Expect = 7e-96, Method: Composition-based stats. Identities = 217/229 (94%), Positives = 224/229 (97%) Query: 1 MNQLDTTFGHSTTSLATRNRVLRNTYWLLALSMIPTVLGAWLGVQMHFSLFAASPMIGFV 60 MN LDTTFGHSTTSLATRNRVLRNTYWLLALSMIPTVLGAWLGVQ+HFSLFA SPMI FV Sbjct: 1 MNNLDTTFGHSTTSLATRNRVLRNTYWLLALSMIPTVLGAWLGVQLHFSLFAGSPMISFV 60 Query: 61 LFLAIAFGFFYAIEKTKNTGWGVAFLLGFTFFMGLMLSRLIEYTLGFSNGAGLIMTAFGG 120 LFLAIAFGFFYAIEKTKN+G GVAFLLGFTFFMGLMLSRLIE+TLGFSNGAGLIMTAFGG Sbjct: 61 LFLAIAFGFFYAIEKTKNSGLGVAFLLGFTFFMGLMLSRLIEFTLGFSNGAGLIMTAFGG 120 Query: 121 TAIIFCGMATIATVSKRDFSGMGKWLFAGVLVILVASLANIFLHLPALQLTISVVAIAIF 180 TAIIFCGMATIATVSKRDFSG+GKWLFAGVLVILVA+LANIFL LPALQLTIS+VAIAIF Sbjct: 121 TAIIFCGMATIATVSKRDFSGLGKWLFAGVLVILVAALANIFLQLPALQLTISMVAIAIF 180 Query: 181 SAYILYDVQQVVNGGETNYISATLAIYLDVYNVFANLLSILGIVGGNRD 229 SAYIL+DVQQVVNGGETNYISATLAIYLDVYNVFANLLSILGIVGGNRD Sbjct: 181 SAYILFDVQQVVNGGETNYISATLAIYLDVYNVFANLLSILGIVGGNRD 229 >ref|YP_004752566.1| integral membrane protein, interacts with FtsH [Collimonas fungivorans Ter331] gb|AEK61743.1| Integral membrane protein, interacts with FtsH [Collimonas fungivorans Ter331] Length = 239 Score = 293 bits (751), Expect = 1e-77, Method: Composition-based stats. Identities = 170/227 (74%), Positives = 200/227 (88%), Gaps = 1/227 (0%) Query: 4 LDTTFGHSTTSLATRNRVLRNTYWLLALSMIPTVLGAWLGVQMHFSLFAASPMIGFVLFL 63 L T+ +T+L+ ++RVLRNTYWLLALSM+PT+ GAWLGVQM FS F SP+IGF+ F+ Sbjct: 13 LQPTYSPGSTALSVQHRVLRNTYWLLALSMLPTIAGAWLGVQMDFSFFRNSPLIGFMAFM 72 Query: 64 AIAFGFFYAIEKTKNTGWGVAFLLGFTFFMGLMLSRLIEYTL-GFSNGAGLIMTAFGGTA 122 A+AFGFFYAIEKTKNTGWGV LLGFTFFMGLMLSRLI +TL GFSNGA LIM AFGGTA Sbjct: 73 AVAFGFFYAIEKTKNTGWGVLLLLGFTFFMGLMLSRLIGHTLVGFSNGATLIMMAFGGTA 132 Query: 123 IIFCGMATIATVSKRDFSGMGKWLFAGVLVILVASLANIFLHLPALQLTISVVAIAIFSA 182 +F MA+IATVSKRDFS MGKWLFAGV+V+L+ASLAN+FL +PAL L +SV+AIAIFSA Sbjct: 133 SVFVVMASIATVSKRDFSNMGKWLFAGVVVLLLASLANVFLQIPALYLAVSVIAIAIFSA 192 Query: 183 YILYDVQQVVNGGETNYISATLAIYLDVYNVFANLLSILGIVGGNRD 229 YILYDVQ+++NGGETNYISATL++YLDVYN+F NLLS+LGI GGNR+ Sbjct: 193 YILYDVQRIINGGETNYISATLSLYLDVYNIFVNLLSLLGIFGGNRN 239 >ref|ZP_08275718.1| Integral membrane protein, interacts with FtsH [Oxalobacteraceae bacterium IMCC9480] gb|EGF30805.1| Integral membrane protein, interacts with FtsH [Oxalobacteraceae bacterium IMCC9480] Length = 230 Score = 285 bits (730), Expect = 3e-75, Method: Composition-based stats. Identities = 167/230 (72%), Positives = 197/230 (85%), Gaps = 1/230 (0%) Query: 1 MNQ-LDTTFGHSTTSLATRNRVLRNTYWLLALSMIPTVLGAWLGVQMHFSLFAASPMIGF 59 MNQ D T+ + + +RV+RNTYWLLALSMIP++ GAWLGVQ++FSLFA SP IGF Sbjct: 1 MNQHYDQTYSSPAVTRSAGHRVMRNTYWLLALSMIPSIFGAWLGVQLNFSLFAGSPFIGF 60 Query: 60 VLFLAIAFGFFYAIEKTKNTGWGVAFLLGFTFFMGLMLSRLIEYTLGFSNGAGLIMTAFG 119 +LF+ IA+GFFYAIEKTK TG GV LLGFTFFMGLMLSRLI +TLG++NG+ L+MTAFG Sbjct: 61 MLFMGIAYGFFYAIEKTKETGMGVVVLLGFTFFMGLMLSRLIAHTLGYANGSTLVMTAFG 120 Query: 120 GTAIIFCGMATIATVSKRDFSGMGKWLFAGVLVILVASLANIFLHLPALQLTISVVAIAI 179 GTA I MATIATVSKRDFSGMG+WLF G+LVILVA++ANIFL +PAL L +SV+AI I Sbjct: 121 GTATIMGVMATIATVSKRDFSGMGRWLFVGMLVILVAAVANIFLQMPALYLVVSVLAIGI 180 Query: 180 FSAYILYDVQQVVNGGETNYISATLAIYLDVYNVFANLLSILGIVGGNRD 229 FSAYIL+DVQQV+NGGETNYI+ATL IYLDVYN+FANLL++LGI GG RD Sbjct: 181 FSAYILHDVQQVINGGETNYITATLHIYLDVYNIFANLLALLGIFGGQRD 230 >ref|YP_001099561.1| hypothetical protein HEAR1259 [Herminiimonas arsenicoxydans] emb|CAL61434.1| conserved hypothetical protein; putative membrane protein [Herminiimonas arsenicoxydans] Length = 229 Score = 285 bits (729), Expect = 3e-75, Method: Composition-based stats. Identities = 172/229 (75%), Positives = 198/229 (86%) Query: 1 MNQLDTTFGHSTTSLATRNRVLRNTYWLLALSMIPTVLGAWLGVQMHFSLFAASPMIGFV 60 M+ L T+G + +TR+RVLRNTYWLLALSMIPTVLGAWLGVQ F+ FAASP +G + Sbjct: 1 MSNLQQTYGSTYDITSTRHRVLRNTYWLLALSMIPTVLGAWLGVQFKFAFFAASPFMGMM 60 Query: 61 LFLAIAFGFFYAIEKTKNTGWGVAFLLGFTFFMGLMLSRLIEYTLGFSNGAGLIMTAFGG 120 +FLAIAFGFFYAIEK KN+G GVA LLGFTFFMGLMLSRLI + LGF+NG LIMTAFGG Sbjct: 61 VFLAIAFGFFYAIEKFKNSGLGVALLLGFTFFMGLMLSRLIGHILGFANGTSLIMTAFGG 120 Query: 121 TAIIFCGMATIATVSKRDFSGMGKWLFAGVLVILVASLANIFLHLPALQLTISVVAIAIF 180 TA I MAT+ATVSKRDFSG+GKWLF GVLVI+VA++ANI+L LPALQLTISVVAI IF Sbjct: 121 TAAILGVMATVATVSKRDFSGLGKWLFMGVLVIIVAAIANIWLQLPALQLTISVVAIGIF 180 Query: 181 SAYILYDVQQVVNGGETNYISATLAIYLDVYNVFANLLSILGIVGGNRD 229 SA+ILYDVQ+++NGGETNY++ATL IYL VYN+FANLLS+LGI GG RD Sbjct: 181 SAFILYDVQRIINGGETNYVTATLGIYLSVYNIFANLLSLLGIFGGERD 229 >ref|YP_001353822.1| hypothetical protein mma_2132 [Janthinobacterium sp. Marseille] gb|ABR89365.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 230 Score = 283 bits (725), Expect = 1e-74, Method: Composition-based stats. Identities = 168/228 (73%), Positives = 195/228 (85%) Query: 2 NQLDTTFGHSTTSLATRNRVLRNTYWLLALSMIPTVLGAWLGVQMHFSLFAASPMIGFVL 61 N FG + + A R+RVLRNTYWLLALSMIPTVLGAW+GVQ F+ FA SP +G ++ Sbjct: 3 NLQQQAFGSTYDTTAVRHRVLRNTYWLLALSMIPTVLGAWIGVQFKFAFFAGSPFMGMII 62 Query: 62 FLAIAFGFFYAIEKTKNTGWGVAFLLGFTFFMGLMLSRLIEYTLGFSNGAGLIMTAFGGT 121 FLAIAFGFFYAIEKTKN+G GVA LLGFTFFMGLMLSRLI + LGF+NG LIMTAFGGT Sbjct: 63 FLAIAFGFFYAIEKTKNSGLGVALLLGFTFFMGLMLSRLIGHILGFANGTSLIMTAFGGT 122 Query: 122 AIIFCGMATIATVSKRDFSGMGKWLFAGVLVILVASLANIFLHLPALQLTISVVAIAIFS 181 A I MAT+ATVSKRDFSG+GKWLF GVLVI+VA++ANI+L LPALQLTISVVAI IFS Sbjct: 123 AAILATMATVATVSKRDFSGLGKWLFMGVLVIIVAAIANIWLQLPALQLTISVVAIGIFS 182 Query: 182 AYILYDVQQVVNGGETNYISATLAIYLDVYNVFANLLSILGIVGGNRD 229 A+ILYDVQ+++NGGETNY++ATL IYL VYN+F+NLL++LGI GG RD Sbjct: 183 AFILYDVQRIINGGETNYVTATLGIYLSVYNIFSNLLALLGIFGGERD 230