BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3458.p (447 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776345.1| GTP-binding protein [Herbaspirillum seropedi... 861 0.0 ref|YP_004752574.1| GTP-binding protein [Collimonas fungivorans ... 789 0.0 ref|YP_001353813.1| GTP-binding protein EngA [Janthinobacterium ... 781 0.0 ref|YP_001099570.1| GTP-binding protein EngA [Herminiimonas arse... 773 0.0 ref|ZP_04578193.1| GTP-binding protein engA [Oxalobacter formige... 707 0.0 >ref|YP_003776345.1| GTP-binding protein [Herbaspirillum seropedicae SmR1] gb|ADJ64437.1| GTP-binding protein [Herbaspirillum seropedicae SmR1] Length = 447 Score = 861 bits (2224), Expect = 0.0, Method: Composition-based stats. Identities = 437/447 (97%), Positives = 439/447 (98%) Query: 1 MKPVIALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPFLVIDTGGF 60 MKPVIALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPFLVIDTGGF Sbjct: 1 MKPVIALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPFLVIDTGGF 60 Query: 61 EPVAKDGIMYEMAKQTKQAVVEADIVVFIVDGRQGLTPHDKTITDFLRKCGRSVLLVVNK 120 EPVAKDGIMYEMAKQTKQAVVEAD+VVFIVDGRQGLTPHDKTITDFLRKCGR VLLVVNK Sbjct: 61 EPVAKDGIMYEMAKQTKQAVVEADVVVFIVDGRQGLTPHDKTITDFLRKCGRPVLLVVNK 120 Query: 121 SEGMKYTSVTADFYELGMGDPYVISAAHGDGVADLVEEALDQVDAQRAQEPEAEEPAVRG 180 SEGMKYTSVTADFYELGMGDPYVISAAHGDGVADLV EALD +AQR EPE EE AVRG Sbjct: 121 SEGMKYTSVTADFYELGMGDPYVISAAHGDGVADLVTEALDVAEAQRTPEPEPEETAVRG 180 Query: 181 TKIAIVGRPNVGKSTLVNTLLGEERVIAFDMPGTTRDSIEIPFEREGRHYTLIDTAGIRR 240 TKIAIVGRPNVGKSTLVNTLLGEERVIAFDMPGTTRDSIEIPFEREGRHYTLIDTAGIRR Sbjct: 181 TKIAIVGRPNVGKSTLVNTLLGEERVIAFDMPGTTRDSIEIPFEREGRHYTLIDTAGIRR 240 Query: 241 RGKVFEAIEKFSVVKTLKSISDANVVLLLLDAQQDISEQDAHIAGFVLESGRALVVGVNK 300 RGKVFEAIEKFSVVKTLKSISDANVVLLLLDAQQDISEQDAHIAGFVLESGRALVVGVNK Sbjct: 241 RGKVFEAIEKFSVVKTLKSISDANVVLLLLDAQQDISEQDAHIAGFVLESGRALVVGVNK 300 Query: 301 WDGMESDQRNQIKMDLERKLNFLSFAKFHFISALKSTGIGPLMKSIDSAYAAAMAKLSTP 360 WDGMESDQRNQIKMDLERKLNFLSFAKFHFISALKSTGIGPLMKSIDSAYAAAMAKLSTP Sbjct: 301 WDGMESDQRNQIKMDLERKLNFLSFAKFHFISALKSTGIGPLMKSIDSAYAAAMAKLSTP 360 Query: 361 RLTRALEEALEHQQPRRKGSIRPKLRYAHQGGQNPPVVVIHGNALEAIDDNYKRYLEKHF 420 RLTRALEEALEHQQPRRKGSIRPKLRYAHQGGQNPPVVVIHGNALEAIDDNYKRYLEKHF Sbjct: 361 RLTRALEEALEHQQPRRKGSIRPKLRYAHQGGQNPPVVVIHGNALEAIDDNYKRYLEKHF 420 Query: 421 RETFSLVGTPLRIEFRSGKNPFIRQEK 447 RETFSLVGTPLRIEFRSGKNPFIRQEK Sbjct: 421 RETFSLVGTPLRIEFRSGKNPFIRQEK 447 >ref|YP_004752574.1| GTP-binding protein [Collimonas fungivorans Ter331] gb|AEK61751.1| GTP-binding protein [Collimonas fungivorans Ter331] Length = 447 Score = 789 bits (2038), Expect = 0.0, Method: Composition-based stats. Identities = 399/448 (89%), Positives = 428/448 (95%), Gaps = 2/448 (0%) Query: 1 MKPVIALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPFLVIDTGGF 60 MKPVIALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPFLVIDTGGF Sbjct: 1 MKPVIALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPFLVIDTGGF 60 Query: 61 EPVAKDGIMYEMAKQTKQAVVEADIVVFIVDGRQGLTPHDKTITDFLRKCGRSVLLVVNK 120 EPVAKDGIM+EMAKQTKQAV EADIV+FIVDGRQGLTPHDKTITDFLRK GRSV+LVVNK Sbjct: 61 EPVAKDGIMHEMAKQTKQAVAEADIVIFIVDGRQGLTPHDKTITDFLRKSGRSVMLVVNK 120 Query: 121 SEGMKYTSVTADFYELGMGDPYVISAAHGDGVADLVEEALDQVDAQR-AQEPEAEEPAVR 179 SEGMKYTSVTA+FYELGMGDPYVISAAHGDGV DLVEE+LD +QR ++EPE E+ R Sbjct: 121 SEGMKYTSVTAEFYELGMGDPYVISAAHGDGVTDLVEESLDLAFSQRPSEEPEPEDKE-R 179 Query: 180 GTKIAIVGRPNVGKSTLVNTLLGEERVIAFDMPGTTRDSIEIPFEREGRHYTLIDTAGIR 239 G KIAIVGRPNVGKSTLVNTLLGEERVIAFDMPGTTRDSIEIPFER+G+ YTLIDTAGIR Sbjct: 180 GIKIAIVGRPNVGKSTLVNTLLGEERVIAFDMPGTTRDSIEIPFERDGKKYTLIDTAGIR 239 Query: 240 RRGKVFEAIEKFSVVKTLKSISDANVVLLLLDAQQDISEQDAHIAGFVLESGRALVVGVN 299 RRGKVFEAIEKFSVVKTL+SIS+ANVVLLLLDAQQDISEQDAHIAGFVLE+GRALVVGVN Sbjct: 240 RRGKVFEAIEKFSVVKTLQSISEANVVLLLLDAQQDISEQDAHIAGFVLETGRALVVGVN 299 Query: 300 KWDGMESDQRNQIKMDLERKLNFLSFAKFHFISALKSTGIGPLMKSIDSAYAAAMAKLST 359 KWDG+ SD+R++IKMD++RKLNFLSFAKFHFISALKSTGI PLMKSIDSAYAAAM+ L+T Sbjct: 300 KWDGLTSDRRDEIKMDMDRKLNFLSFAKFHFISALKSTGITPLMKSIDSAYAAAMSNLTT 359 Query: 360 PRLTRALEEALEHQQPRRKGSIRPKLRYAHQGGQNPPVVVIHGNALEAIDDNYKRYLEKH 419 P+LTRAL EA+EHQQPRRKGSIRPKLRYAHQGG NPP+VVIHGNALE+I+DNYKRYLEKH Sbjct: 360 PKLTRALIEAVEHQQPRRKGSIRPKLRYAHQGGMNPPIVVIHGNALESIEDNYKRYLEKH 419 Query: 420 FRETFSLVGTPLRIEFRSGKNPFIRQEK 447 FRETFSLVGTPLRIEFRS +NP+ RQEK Sbjct: 420 FRETFSLVGTPLRIEFRSSRNPYARQEK 447 >ref|YP_001353813.1| GTP-binding protein EngA [Janthinobacterium sp. Marseille] sp|A6SZW6|DER_JANMA RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA gb|ABR89672.1| GTP-binding protein EngA [Janthinobacterium sp. Marseille] Length = 447 Score = 781 bits (2017), Expect = 0.0, Method: Composition-based stats. Identities = 391/447 (87%), Positives = 421/447 (94%) Query: 1 MKPVIALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPFLVIDTGGF 60 MKPVIAL+GRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPFLVIDTGGF Sbjct: 1 MKPVIALIGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPFLVIDTGGF 60 Query: 61 EPVAKDGIMYEMAKQTKQAVVEADIVVFIVDGRQGLTPHDKTITDFLRKCGRSVLLVVNK 120 EPVAK+GIM+EMAKQTKQAV EAD+V+FIVDGRQGLTPHDKTITDFLRK GRSV+LVVNK Sbjct: 61 EPVAKEGIMHEMAKQTKQAVAEADVVIFIVDGRQGLTPHDKTITDFLRKSGRSVMLVVNK 120 Query: 121 SEGMKYTSVTADFYELGMGDPYVISAAHGDGVADLVEEALDQVDAQRAQEPEAEEPAVRG 180 +EGMKYT+VTADFYELGMGDPYVISAAHGDGV DLVEEAL+ AQR E EA R Sbjct: 121 AEGMKYTTVTADFYELGMGDPYVISAAHGDGVNDLVEEALNIAFAQRPPEEEAPASNDRS 180 Query: 181 TKIAIVGRPNVGKSTLVNTLLGEERVIAFDMPGTTRDSIEIPFEREGRHYTLIDTAGIRR 240 K+AIVGRPNVGKSTLVNTLLGEERVIAFD+PGTTRDSIEIPFER+G+HYTLIDTAGIRR Sbjct: 181 IKLAIVGRPNVGKSTLVNTLLGEERVIAFDLPGTTRDSIEIPFERDGKHYTLIDTAGIRR 240 Query: 241 RGKVFEAIEKFSVVKTLKSISDANVVLLLLDAQQDISEQDAHIAGFVLESGRALVVGVNK 300 RGKVFEAIEKFSVVKTL+SIS+ANVVLLLLDAQQDISEQDAHIAGF+LESGRALVVGVNK Sbjct: 241 RGKVFEAIEKFSVVKTLQSISEANVVLLLLDAQQDISEQDAHIAGFILESGRALVVGVNK 300 Query: 301 WDGMESDQRNQIKMDLERKLNFLSFAKFHFISALKSTGIGPLMKSIDSAYAAAMAKLSTP 360 WDG+ SD+R++IKMDLERKL+FLSFAK HF+SALKS+GIGP+MKS+D AYAAAM+ LSTP Sbjct: 301 WDGLTSDRRDEIKMDLERKLSFLSFAKTHFVSALKSSGIGPMMKSVDGAYAAAMSNLSTP 360 Query: 361 RLTRALEEALEHQQPRRKGSIRPKLRYAHQGGQNPPVVVIHGNALEAIDDNYKRYLEKHF 420 +LTRAL EA+EHQQPRRKGSIRPKLRYAHQGG NPP+VVIHGNALEAID NYKR+LEKHF Sbjct: 361 KLTRALIEAVEHQQPRRKGSIRPKLRYAHQGGMNPPIVVIHGNALEAIDANYKRFLEKHF 420 Query: 421 RETFSLVGTPLRIEFRSGKNPFIRQEK 447 RETFSLVGTPLRIE RSGKNPF R EK Sbjct: 421 RETFSLVGTPLRIELRSGKNPFSRSEK 447 >ref|YP_001099570.1| GTP-binding protein EngA [Herminiimonas arsenicoxydans] sp|A4G4K6|DER_HERAR RecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA emb|CAL61443.1| GTP-binding protein EngA [Herminiimonas arsenicoxydans] Length = 447 Score = 773 bits (1995), Expect = 0.0, Method: Composition-based stats. Identities = 387/447 (86%), Positives = 420/447 (93%) Query: 1 MKPVIALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPFLVIDTGGF 60 MKPVIALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGR+GERPFLVIDTGGF Sbjct: 1 MKPVIALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRMGERPFLVIDTGGF 60 Query: 61 EPVAKDGIMYEMAKQTKQAVVEADIVVFIVDGRQGLTPHDKTITDFLRKCGRSVLLVVNK 120 EPVAK+GIM+EMAKQTKQAV EAD+V+FIVDGRQGLTPHDKTITDFLRK GRSV+LVVNK Sbjct: 61 EPVAKEGIMHEMAKQTKQAVAEADVVIFIVDGRQGLTPHDKTITDFLRKSGRSVMLVVNK 120 Query: 121 SEGMKYTSVTADFYELGMGDPYVISAAHGDGVADLVEEALDQVDAQRAQEPEAEEPAVRG 180 +EGMKYT VTADFYELG+GDPYVISAAHGDGV+DLVEE+LD AQR E E E R Sbjct: 121 AEGMKYTMVTADFYELGLGDPYVISAAHGDGVSDLVEESLDIAFAQRPPEEEVPESKDRS 180 Query: 181 TKIAIVGRPNVGKSTLVNTLLGEERVIAFDMPGTTRDSIEIPFEREGRHYTLIDTAGIRR 240 ++AIVGRPNVGKSTLVNTLLGEERVIAFD+PGTTRDSIEIPFEREG+ YTLIDTAGIRR Sbjct: 181 IRLAIVGRPNVGKSTLVNTLLGEERVIAFDLPGTTRDSIEIPFEREGKLYTLIDTAGIRR 240 Query: 241 RGKVFEAIEKFSVVKTLKSISDANVVLLLLDAQQDISEQDAHIAGFVLESGRALVVGVNK 300 RGKVFEAIEKFSVVKTL+SIS+ANVVLLLLDAQQDISEQDAHIAGF+LESGRALVVGVNK Sbjct: 241 RGKVFEAIEKFSVVKTLQSISEANVVLLLLDAQQDISEQDAHIAGFILESGRALVVGVNK 300 Query: 301 WDGMESDQRNQIKMDLERKLNFLSFAKFHFISALKSTGIGPLMKSIDSAYAAAMAKLSTP 360 WDG+ SD+R++IK+DLERKL FLSFAK HF+SALKS+GIGP+MKS+D+AYAAAM+ LSTP Sbjct: 301 WDGLTSDRRDEIKIDLERKLGFLSFAKTHFVSALKSSGIGPMMKSVDNAYAAAMSNLSTP 360 Query: 361 RLTRALEEALEHQQPRRKGSIRPKLRYAHQGGQNPPVVVIHGNALEAIDDNYKRYLEKHF 420 +LTRAL EA+EHQQPRRKGSIRPKLRYAHQGG NPP+VVIHGNAL+AID NYKR+LEKHF Sbjct: 361 KLTRALIEAVEHQQPRRKGSIRPKLRYAHQGGMNPPIVVIHGNALDAIDANYKRFLEKHF 420 Query: 421 RETFSLVGTPLRIEFRSGKNPFIRQEK 447 RETFSLVGTPLRIE RSGKNPF R EK Sbjct: 421 RETFSLVGTPLRIELRSGKNPFSRSEK 447 >ref|ZP_04578193.1| GTP-binding protein engA [Oxalobacter formigenes OXCC13] gb|EEO29166.1| GTP-binding protein engA [Oxalobacter formigenes OXCC13] Length = 446 Score = 707 bits (1824), Expect = 0.0, Method: Composition-based stats. Identities = 348/446 (78%), Positives = 402/446 (90%), Gaps = 2/446 (0%) Query: 1 MKPVIALVGRPNVGKSTLFNRLTRSRDALVADLPGLTRDRHYGEGRVGERPFLVIDTGGF 60 MKPVIALVGRPNVGKSTLFNRLTRSR ALVAD PGLTRDRHYGEGR+G+RPFLVIDTGGF Sbjct: 1 MKPVIALVGRPNVGKSTLFNRLTRSRAALVADYPGLTRDRHYGEGRMGDRPFLVIDTGGF 60 Query: 61 EPVAKDGIMYEMAKQTKQAVVEADIVVFIVDGRQGLTPHDKTITDFLRKCGRSVLLVVNK 120 EPV K+G+M EMAKQTKQAV EAD+V+FIVDGRQG+TPHDK ITD+LRK GR V+L VNK Sbjct: 61 EPVVKEGVMQEMAKQTKQAVAEADVVIFIVDGRQGITPHDKAITDYLRKSGRPVILAVNK 120 Query: 121 SEGMKYTSVTADFYELGMG-DPYVISAAHGDGVADLVEEALDQVDAQRAQEPEAEEPAVR 179 +EGMKYT+V ADFYELG+G DP VIS+AHGDGV L++EAL V A+ + E + Sbjct: 121 AEGMKYTAVVADFYELGLGSDPLVISSAHGDGVHTLLDEALKMVPLSPAETEDEIESGQK 180 Query: 180 GTKIAIVGRPNVGKSTLVNTLLGEERVIAFDMPGTTRDSIEIPFEREGRHYTLIDTAGIR 239 K+AIVGRPNVGKST++N LLGEERVIAFD+PGTTRD+IEIPFER+G+ YTL+DTAG+R Sbjct: 181 HIKLAIVGRPNVGKSTMINALLGEERVIAFDLPGTTRDAIEIPFERDGKQYTLVDTAGLR 240 Query: 240 RRGKVFEAIEKFSVVKTLKSISDANVVLLLLDAQQDISEQDAHIAGFVLESGRALVVGVN 299 +RGKVF+AIEKFSVVKTL++IS+ANVVLLL+DAQQDISEQDAHIAGFVLESGRALVVG+N Sbjct: 241 KRGKVFQAIEKFSVVKTLQAISEANVVLLLMDAQQDISEQDAHIAGFVLESGRALVVGIN 300 Query: 300 KWDGMESDQRNQIKMDLERKLNFLSFAKFHFISALKSTGIGPLMKSIDSAYAAAMAKLST 359 KWDG++ D+R +IK ++ERKL+FLSFAKFH++SALKSTGI LM+SIDSAYAAAMAKLST Sbjct: 301 KWDGLDQDKRKEIKSEVERKLHFLSFAKFHYVSALKSTGISALMRSIDSAYAAAMAKLST 360 Query: 360 PRLTRALEEALEHQQ-PRRKGSIRPKLRYAHQGGQNPPVVVIHGNALEAIDDNYKRYLEK 418 PRLTR LEEA+EHQQ PR++G RPKLRYAHQGGQNPP++VIHGN+L+AI D+YKRYLEK Sbjct: 361 PRLTRVLEEAVEHQQPPRKQGGTRPKLRYAHQGGQNPPIIVIHGNSLDAISDDYKRYLEK 420 Query: 419 HFRETFSLVGTPLRIEFRSGKNPFIR 444 HFR+ FSL GTPLRIEFRSGKNPF + Sbjct: 421 HFRDAFSLTGTPLRIEFRSGKNPFAK 446