BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3455.p (451 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776342.1| transmembrane protease [Herbaspirillum serop... 697 0.0 ref|YP_004752577.1| HflK protein [Collimonas fungivorans Ter331]... 566 e-159 ref|YP_001099573.1| HflKC membrane-associated complex associates... 560 e-157 ref|YP_001353810.1| membrane protease subunit HflK [Janthinobact... 508 e-142 gb|EGW61579.1| HflK protein [Dechlorosoma suillum PS] 453 e-125 >ref|YP_003776342.1| transmembrane protease [Herbaspirillum seropedicae SmR1] gb|ADJ64434.1| transmembrane protease protein [Herbaspirillum seropedicae SmR1] Length = 450 Score = 697 bits (1798), Expect = 0.0, Method: Composition-based stats. Identities = 409/452 (90%), Positives = 423/452 (93%), Gaps = 3/452 (0%) Query: 1 MLVSLFRKIGVKFSLNDPQWGRGSQNDNRENQNNGSNGDKRPEKPSGNNDGPPDLDQLWR 60 MLVSLFRKIGVKFSLNDPQWGRGSQNDNR+NQNNG+NGDKRPEKPSGNNDGPPDLDQLWR Sbjct: 1 MLVSLFRKIGVKFSLNDPQWGRGSQNDNRDNQNNGNNGDKRPEKPSGNNDGPPDLDQLWR 60 Query: 61 DFNQRIAGLLGRKGGGSDGGNGGGGFNRGD-VKGAGIGVGVIAVIVAFLWLASGFFIVQE 119 DFNQR++GL GRKGGG G GG VKGAGIGVGVIAVIVAFLWLASGFFIVQE Sbjct: 61 DFNQRLSGLFGRKGGGGSSDGGNGGGFNRGDVKGAGIGVGVIAVIVAFLWLASGFFIVQE 120 Query: 120 GQTAVVTTFGRYSHTTLPGFNWRWPYPIQGHEIVNMSQVRTAEIGYRGNVRNKQLKESLM 179 GQTAVVTTFGRYSHTTLPGFNWRWPYPIQGHEIVNMSQVRTAEIGYRGNVRNKQLKESLM Sbjct: 121 GQTAVVTTFGRYSHTTLPGFNWRWPYPIQGHEIVNMSQVRTAEIGYRGNVRNKQLKESLM 180 Query: 180 LTDDENIIDIQFAVQYKLKNAAEWLFNNRDPDDSVRQVAETAIREIVGRSKMDFVLYEGR 239 LTDDENIIDIQFAVQYKLKNAAEWLFNNRDPDDSVRQVAETAIREIVGRSKMDFVLYEGR Sbjct: 181 LTDDENIIDIQFAVQYKLKNAAEWLFNNRDPDDSVRQVAETAIREIVGRSKMDFVLYEGR 240 Query: 240 EKVALDVSQRMQQILDRYKSGVQITNVTMQGVQPPEQVQAAFDDAVKAGQDRERLKNEGQ 299 EKVALDVSQRMQQILDRYKSGVQITNVTMQGVQPPEQVQAAFDDAVKAGQDRERLKNEGQ Sbjct: 241 EKVALDVSQRMQQILDRYKSGVQITNVTMQGVQPPEQVQAAFDDAVKAGQDRERLKNEGQ 300 Query: 300 AYANDVIPRASGAASRLLEEAEAYRSRVTANAEGDASRFTQVQEAYAKAPAVTRDRMYLE 359 AYANDVIPRASGAASRLLEEAEAYRSRV ANAEGDASRFTQVQEAYAKAPAVTRDRMY+E Sbjct: 301 AYANDVIPRASGAASRLLEEAEAYRSRVVANAEGDASRFTQVQEAYAKAPAVTRDRMYIE 360 Query: 360 TMQQIFANTTKVMVDAKNGSNLLYLPLDKLIQQSAGDAAPASGKAPASSTVQPSAGAAST 419 TMQQIFANTTKVMVDAK+GSNLLYLPLDKLIQQ+ +AA A PA+S P+A AA+ Sbjct: 361 TMQQIFANTTKVMVDAKSGSNLLYLPLDKLIQQTGPEAAAAG--KPAASAAAPAASAANP 418 Query: 420 TSTAGNDTVYSSELMRDSRNRDPRDARDREVR 451 S AGNDTVYSSELMRD RNRDPR++R+REVR Sbjct: 419 ASNAGNDTVYSSELMRDMRNRDPRESREREVR 450 >ref|YP_004752577.1| HflK protein [Collimonas fungivorans Ter331] gb|AEK61754.1| HflK protein [Collimonas fungivorans Ter331] Length = 442 Score = 567 bits (1460), Expect = e-159, Method: Composition-based stats. Identities = 305/399 (76%), Positives = 337/399 (84%), Gaps = 12/399 (3%) Query: 1 MLVSLFRKIGVKFSLNDPQWGRGSQNDNRENQNNGSNGDKRPEKPSGNNDGPPDLDQLWR 60 ML +LF+K+GVKFSLNDPQWGR SQNDN++N N K+P NN GPPDLD+LW+ Sbjct: 11 MLGTLFKKLGVKFSLNDPQWGRNSQNDNKQN-----NDGKKP-----NNGGPPDLDKLWQ 60 Query: 61 DFNQRIAGLLGRKGGGSDGGNGGGGFNRGDVKGAGIGVGVIAVIVAFLWLASGFFIVQEG 120 DFNQR+A L G G + GGGFN G G GIGVG IA +VA LWLASGFF VQEG Sbjct: 61 DFNQRLA-RLLGNKNGGGGDSSGGGFNPGSA-GMGIGVGAIAAVVALLWLASGFFTVQEG 118 Query: 121 QTAVVTTFGRYSHTTLPGFNWRWPYPIQGHEIVNMSQVRTAEIGYRGNVRNKQLKESLML 180 QT VV TFG+YSH+T PGFNWRWPYPIQ HEIVN+SQVRT E+GYR N +NKQ KE+LML Sbjct: 119 QTGVVMTFGKYSHSTTPGFNWRWPYPIQSHEIVNVSQVRTVEVGYRANAKNKQPKEALML 178 Query: 181 TDDENIIDIQFAVQYKLKNAAEWLFNNRDPDDSVRQVAETAIREIVGRSKMDFVLYEGRE 240 TDDENIIDIQFAVQY LK+A++W+FN RDP+++VRQVAET+IRE+VGR+KMDFVLYEGRE Sbjct: 179 TDDENIIDIQFAVQYTLKSASDWVFNVRDPEETVRQVAETSIREVVGRNKMDFVLYEGRE 238 Query: 241 KVALDVSQRMQQILDRYKSGVQITNVTMQGVQPPEQVQAAFDDAVKAGQDRERLKNEGQA 300 KVALD SQ MQQILDRYK GVQITNVTMQGVQPPEQVQAAFDDAVKAGQDRER KNEGQA Sbjct: 239 KVALDTSQLMQQILDRYKVGVQITNVTMQGVQPPEQVQAAFDDAVKAGQDRERQKNEGQA 298 Query: 301 YANDVIPRASGAASRLLEEAEAYRSRVTANAEGDASRFTQVQEAYAKAPAVTRDRMYLET 360 YANDVIP+A GAASRLL+EAEAY +RVTANAEGDASRF QV Y KAP VTRDRMYL+T Sbjct: 299 YANDVIPKARGAASRLLQEAEAYSARVTANAEGDASRFKQVLTEYQKAPGVTRDRMYLDT 358 Query: 361 MQQIFANTTKVMVDAKNGSNLLYLPLDKLIQQSAGDAAP 399 MQQIFANTTKVMVDAK+GSNLLYLPLDKLI QS A P Sbjct: 359 MQQIFANTTKVMVDAKSGSNLLYLPLDKLISQSVASAVP 397 >ref|YP_001099573.1| HflKC membrane-associated complex associates with HflC, part of modulator for protease specific for FtsH phage lambda cII repressor [Herminiimonas arsenicoxydans] emb|CAL61446.1| protein HflK [Herminiimonas arsenicoxydans] Length = 431 Score = 560 bits (1444), Expect = e-157, Method: Composition-based stats. Identities = 313/455 (68%), Positives = 358/455 (78%), Gaps = 28/455 (6%) Query: 1 MLVSLFRKIGVKFSLNDPQWGRGSQNDNRENQNNGSNGDKRPEKPSGNNDGPPDLDQLWR 60 MLVSL +K G+KFSLNDP+WGRGS D+ +NQ+ KRP NDGPPDLDQLWR Sbjct: 1 MLVSLLKKFGLKFSLNDPRWGRGS--DDNKNQDG-----KRP------NDGPPDLDQLWR 47 Query: 61 DFNQRIAGLLGRKGGGSDGGNGGGGFN----RGDVKGAGIGVGVIAVIVAFLWLASGFFI 116 DFNQR+ L G + G G GG + D++GAGIG GVIAVIVAFLWL SGFFI Sbjct: 48 DFNQRLGNLFGNRKNGGGNGGNGGNTGGTGFKPDMRGAGIGAGVIAVIVAFLWLVSGFFI 107 Query: 117 VQEGQTAVVTTFGRYSHTTLPGFNWRWPYPIQGHEIVNMSQVRTAEIGYRGNVRNKQLKE 176 VQEGQT VV TFG+YSH T GFNWRWP PIQ HE VN+SQVRT E+GYRG+V+NKQ +E Sbjct: 108 VQEGQTGVVLTFGKYSHMTPAGFNWRWPAPIQSHETVNVSQVRTVEVGYRGSVKNKQHQE 167 Query: 177 SLMLTDDENIIDIQFAVQYKLKNAAEWLFNNRDPDDSVRQVAETAIREIVGRSKMDFVLY 236 SLMLT+DENIIDIQFAVQY LKNA++W+FNNR+ + V+QVAETAIRE+VGRSKMDFVLY Sbjct: 168 SLMLTEDENIIDIQFAVQYTLKNASDWVFNNREQGEMVKQVAETAIREVVGRSKMDFVLY 227 Query: 237 EGREKVALDVSQRMQQILDRYKSGVQITNVTMQGVQPPEQVQAAFDDAVKAGQDRERLKN 296 EGREK+A D SQ MQQI+DRYK+GVQITNVTMQGVQPPEQVQA+FDDAVKAGQDRER KN Sbjct: 228 EGREKIAFDTSQLMQQIVDRYKAGVQITNVTMQGVQPPEQVQASFDDAVKAGQDRERQKN 287 Query: 297 EGQAYANDVIPRASGAASRLLEEAEAYRSRVTANAEGDASRFTQVQEAYAKAPAVTRDRM 356 EGQAYANDVIPRA GAASRL+EE+EAYRS VTANA+G+ASRF QV Y KAPAVTRDRM Sbjct: 288 EGQAYANDVIPRARGAASRLMEESEAYRSSVTANAQGEASRFKQVLVEYQKAPAVTRDRM 347 Query: 357 YLETMQQIFANTTKVMVDAKNGSNLLYLPLDKLIQQSAGDAAPASGKAPASSTVQPSAGA 416 YLETMQ+IF++TTKVMVDAK G+NL+YLPLDKLI Q+A A A + A+ + PS Sbjct: 348 YLETMQKIFSSTTKVMVDAKGGNNLIYLPLDKLIAQTAAPAGAAVAPSAATPSSLPSDSV 407 Query: 417 ASTTSTAGNDTVYSSELMRDSRNRDPRDARDREVR 451 A T +L +DSR RD R +RDRE R Sbjct: 408 ALET-----------QLPQDSRTRDSRTSRDRESR 431 >ref|YP_001353810.1| membrane protease subunit HflK [Janthinobacterium sp. Marseille] gb|ABR90058.1| membrane protease subunit HflK [Janthinobacterium sp. Marseille] Length = 424 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 284/387 (73%), Positives = 324/387 (83%), Gaps = 17/387 (4%) Query: 11 VKFSLNDPQWGRGSQNDNRENQNNGSNGDKRPEKPSGNNDGPPDLDQLWRDFNQRIAGLL 70 +KFSLNDP+WGRGS +DN +NQ+N KRP NDGPPDLDQLWRDFNQR++ + Sbjct: 1 MKFSLNDPRWGRGS-DDNNKNQDN-----KRP------NDGPPDLDQLWRDFNQRLSNIF 48 Query: 71 GRKGGGSDGGNGGGGFN-----RGDVKGAGIGVGVIAVIVAFLWLASGFFIVQEGQTAVV 125 G K G G G + D++GAGIG +IA IVAFLWL SGFFIVQEGQT VV Sbjct: 49 GNKKNGGGGNGGDSSGGGMGGFKPDMRGAGIGAAIIAGIVAFLWLVSGFFIVQEGQTGVV 108 Query: 126 TTFGRYSHTTLPGFNWRWPYPIQGHEIVNMSQVRTAEIGYRGNVRNKQLKESLMLTDDEN 185 TFG+YSH T GFNWRWP PIQ HEIVN+SQVRT E+GYRGNV+NKQ +ESLMLT+DEN Sbjct: 109 MTFGKYSHMTPAGFNWRWPTPIQSHEIVNVSQVRTVEVGYRGNVKNKQQQESLMLTEDEN 168 Query: 186 IIDIQFAVQYKLKNAAEWLFNNRDPDDSVRQVAETAIREIVGRSKMDFVLYEGREKVALD 245 IIDIQFAVQY LKNA++W+FNNR+ ++ V+QVAETAIRE+VGRSKMDFVLYEGREK+A D Sbjct: 169 IIDIQFAVQYTLKNASDWVFNNREQEEMVKQVAETAIREVVGRSKMDFVLYEGREKIAFD 228 Query: 246 VSQRMQQILDRYKSGVQITNVTMQGVQPPEQVQAAFDDAVKAGQDRERLKNEGQAYANDV 305 SQ MQQI+DRYKSGVQITNVTMQGVQPPEQVQA+FDDAVKAGQDRER KNEGQAYANDV Sbjct: 229 SSQLMQQIVDRYKSGVQITNVTMQGVQPPEQVQASFDDAVKAGQDRERQKNEGQAYANDV 288 Query: 306 IPRASGAASRLLEEAEAYRSRVTANAEGDASRFTQVQEAYAKAPAVTRDRMYLETMQQIF 365 IPRA GAASRLL+E+EAYRS VTANA+G+ASRF QV Y KAPAVTRDRMYLETMQ+IF Sbjct: 289 IPRARGAASRLLQESEAYRSSVTANAQGEASRFKQVLVEYQKAPAVTRDRMYLETMQKIF 348 Query: 366 ANTTKVMVDAKNGSNLLYLPLDKLIQQ 392 ++TTKVMVD+K ++L+YLPLDKLI Q Sbjct: 349 SSTTKVMVDSKGNNSLIYLPLDKLISQ 375 >gb|EGW61579.1| HflK protein [Dechlorosoma suillum PS] Length = 424 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 256/448 (57%), Positives = 319/448 (71%), Gaps = 25/448 (5%) Query: 5 LFRKIGVKFSLNDPQWGRGSQNDNRENQNNGSNGDKRPEKPSGNNDGPPDLDQLWRDFNQ 64 + IG+ SLNDPQWG N G+ +RP N GPPDL+ LWRDFN+ Sbjct: 1 MISSIGLLMSLNDPQWG-----------NRGNGDGRRP------NQGPPDLEDLWRDFNR 43 Query: 65 RIAGLLGRKGGGSDGGNGGGGFNRGDVKGAGIGVGVIAVIVAFLWLASGFFIVQEGQTAV 124 R++G+ G+KG G GG GG + + K G G+G++A +VA +WLASGF+IV Q V Sbjct: 44 RLSGMFGKKGDGKFGGGDSGGPSDFNPKLFGGGIGLLAALVAVVWLASGFYIVDASQRGV 103 Query: 125 VTTFGRYSHTTLPGFNWRWPYPIQGHEIVNMSQVRTAEIGYRGNVRNKQLKESLMLTDDE 184 V FG++ TT PG WR P+PI+ HE+VN++ VRT E+GYRG+ +NK LKE+LMLTDDE Sbjct: 104 VLQFGKFKETTEPGLRWRLPFPIESHELVNLTGVRTIEVGYRGSEKNKVLKEALMLTDDE 163 Query: 185 NIIDIQFAVQYKLKNAAEWLFNNRDPDDSVRQVAETAIREIVGRSKMDFVLYEGREKVAL 244 NII+IQFAVQY LK+ E+LFNNR D++V Q +ETAIREIVG+SKMDFVLYEGRE+VA Sbjct: 164 NIINIQFAVQYYLKDPVEYLFNNRHADEAVMQASETAIREIVGKSKMDFVLYEGREQVAA 223 Query: 245 DVSQRMQQILDRYKSGVQITNVTMQGVQPPEQVQAAFDDAVKAGQDRERLKNEGQAYAND 304 ++ MQ ILDRY +G+ I+ VTMQ QPPEQVQAAFDDAVKAGQDRER KNEGQAYAND Sbjct: 224 QAAKLMQDILDRYNTGILISKVTMQNAQPPEQVQAAFDDAVKAGQDRERQKNEGQAYAND 283 Query: 305 VIPRASGAASRLLEEAEAYRSRVTANAEGDASRFTQVQEAYAKAPAVTRDRMYLETMQQI 364 VIPRA G ++RLL+EA+ Y+ R+ A AEGDASRF Q+ YAKAP VTR R+YLETMQQI Sbjct: 284 VIPRAKGTSARLLQEADGYKQRMIATAEGDASRFKQILVEYAKAPEVTRQRLYLETMQQI 343 Query: 365 FANTTKVMVDAKNGSNLLYLPLDKLIQQSAGDAAPASGKAPASSTVQPSAGAASTTSTAG 424 +ANT+K+MVDAK G+NLLYLPLDKL++ AAP PA+ V+ + + S Sbjct: 344 YANTSKIMVDAKGGNNLLYLPLDKLMETV---AAPGHAGVPAAQAVESTVNRGVSIS--- 397 Query: 425 NDTVYSSELMRDSRNRDPR-DARDREVR 451 ND E D R+RD +RDR+ R Sbjct: 398 NDVPPQLE-KNDVRSRDASLRSRDRDGR 424