BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3444.p (293 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776336.1| LysR family transcription regulator protein ... 448 e-124 ref|YP_001099999.1| transcriptional regulator [Herminiimonas ars... 367 1e-99 ref|ZP_06458120.1| LysR family transcriptional regulator [Pseudo... 358 8e-97 ref|ZP_07003472.1| Transcriptional regulator, LysR family [Pseud... 357 1e-96 ref|ZP_05641554.1| LysR family transcriptional regulator [Pseudo... 357 2e-96 >ref|YP_003776336.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64428.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 293 Score = 448 bits (1152), Expect = e-124, Method: Composition-based stats. Identities = 235/293 (80%), Positives = 269/293 (91%) Query: 1 MSIQSEELRTFVAVVEAGTLSAAAEVLEQTTSGVSRALTRLEEKLGTSLLTRTTRRMDLT 60 MS+QSEELRTFVAVVEAGTLSAAAE+L QTTSGVSRAL+RLE+KLG SLLTRTTRRM+LT Sbjct: 1 MSLQSEELRTFVAVVEAGTLSAAAELLAQTTSGVSRALSRLEDKLGASLLTRTTRRMELT 60 Query: 61 EEGQVFLEQAREIVAAMERAEESIRIRSQKPVGKLRVDAAVPFMLHCVVPHVGAFRAAYP 120 EEG+ FLEQAR I+AAME A++SIR+R++KPVGKLRVDA+ PFMLHCVVPHVG FRAAYP Sbjct: 61 EEGRAFLEQARAILAAMESAQDSIRLRTRKPVGKLRVDASAPFMLHCVVPHVGQFRAAYP 120 Query: 121 EIELELTTNDRFIDLVEQRADIAIRIGELQDSTLHAKPLTSARLQLLASPEYLRRHGTPK 180 +IELELTTNDRFIDLVE RADIAIRIGELQDS+LHA+ L+SARL ++ASP YL RHG P+ Sbjct: 121 DIELELTTNDRFIDLVEHRADIAIRIGELQDSSLHARALSSARLNVVASPAYLARHGEPE 180 Query: 181 TVKDLDKHQLIGFTQPEGLNNWPLQHEDGDRYQVRPAIRASSGETIRHLALQGQGIACLS 240 +V+ L++HQLIGF+QP+ LN+WPL+H GDRYQ RPAIRASSGETIRHLALQGQGIACLS Sbjct: 181 SVEALEQHQLIGFSQPDQLNHWPLRHSAGDRYQTRPAIRASSGETIRHLALQGQGIACLS 240 Query: 241 DFMTAADLAASRLVRLLDHYDSGFRQKISAVYYHNTQLSRRISCFLDFLQCKL 293 +FM+ AD+AA RLVRLL DSG+RQKISAVYY++TQLSRRISCFLDFLQ KL Sbjct: 241 NFMSDADIAAGRLVRLLPQADSGYRQKISAVYYYSTQLSRRISCFLDFLQEKL 293 >ref|YP_001099999.1| transcriptional regulator [Herminiimonas arsenicoxydans] emb|CAL61874.1| putative Bacterial regulatory protein, LysR family [Herminiimonas arsenicoxydans] Length = 293 Score = 367 bits (942), Expect = 1e-99, Method: Composition-based stats. Identities = 190/293 (64%), Positives = 238/293 (81%) Query: 1 MSIQSEELRTFVAVVEAGTLSAAAEVLEQTTSGVSRALTRLEEKLGTSLLTRTTRRMDLT 60 M I S++L+TFVAV+++GTL AAA+ L QTTS VSR L+RLEEKL TSLLTRTTRRM+LT Sbjct: 1 MDINSDDLKTFVAVIDSGTLGAAAQHLGQTTSAVSRGLSRLEEKLATSLLTRTTRRMELT 60 Query: 61 EEGQVFLEQAREIVAAMERAEESIRIRSQKPVGKLRVDAAVPFMLHCVVPHVGAFRAAYP 120 +EG++FL++AR I+AAM+ AEE+IR+R Q+P G+LR+DAA PF+LH +VPHV FRA YP Sbjct: 61 DEGRLFLKKARAILAAMDEAEEAIRVRRQQPSGRLRIDAAAPFILHAIVPHVAEFRALYP 120 Query: 121 EIELELTTNDRFIDLVEQRADIAIRIGELQDSTLHAKPLTSARLQLLASPEYLRRHGTPK 180 +I LELT+ND+ DL+E R DIAIRIG LQDSTLHA+ LT+ L LLASP+YL+RHG P Sbjct: 121 QITLELTSNDQVADLLEHRTDIAIRIGNLQDSTLHARALTANPLHLLASPDYLQRHGMPT 180 Query: 181 TVKDLDKHQLIGFTQPEGLNNWPLQHEDGDRYQVRPAIRASSGETIRHLALQGQGIACLS 240 T + L HQL+GF Q E N WP++H G+ V PA+ ASSGET+R LAL GQGIA L+ Sbjct: 181 TPEQLAGHQLLGFLQFESGNTWPIRHAGGEGLTVTPALFASSGETLRALALHGQGIASLA 240 Query: 241 DFMTAADLAASRLVRLLDHYDSGFRQKISAVYYHNTQLSRRISCFLDFLQCKL 293 D+MT D+AA RLVR+L++Y +G+RQ+I AVYY NTQLSRRISCFL+FLQ KL Sbjct: 241 DYMTRDDIAAGRLVRILENYYTGYRQQIHAVYYRNTQLSRRISCFLEFLQQKL 293 >ref|ZP_06458120.1| LysR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] ref|ZP_06482693.1| LysR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 2250] gb|EGH03871.1| LysR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 298 Score = 358 bits (918), Expect = 8e-97, Method: Composition-based stats. Identities = 180/293 (61%), Positives = 225/293 (76%) Query: 1 MSIQSEELRTFVAVVEAGTLSAAAEVLEQTTSGVSRALTRLEEKLGTSLLTRTTRRMDLT 60 M +S+EL+ FV+V+E+G++SAAAE + QT SGVSR L+RLE KL T+L+ RTTRRMDLT Sbjct: 1 MKARSDELQVFVSVIESGSISAAAEKMGQTPSGVSRTLSRLEAKLETTLINRTTRRMDLT 60 Query: 61 EEGQVFLEQAREIVAAMERAEESIRIRSQKPVGKLRVDAAVPFMLHCVVPHVGAFRAAYP 120 EEG+ FLE+AR I+ ME EE + Q P G+LR++AA PFMLHC+VPHV FR YP Sbjct: 61 EEGKFFLERARHIIEQMESLEERLSSSRQTPAGRLRINAASPFMLHCIVPHVAEFRQRYP 120 Query: 121 EIELELTTNDRFIDLVEQRADIAIRIGELQDSTLHAKPLTSARLQLLASPEYLRRHGTPK 180 +IELEL ++D FIDL+EQ DIAIRIG L DSTLHA+ L S L ++ASP YL+RHG+PK Sbjct: 121 DIELELNSDDWFIDLLEQSTDIAIRIGVLPDSTLHARSLGSCLLNIVASPAYLQRHGSPK 180 Query: 181 TVKDLDKHQLIGFTQPEGLNNWPLQHEDGDRYQVRPAIRASSGETIRHLALQGQGIACLS 240 T +DL +H L+GFT E LN WPL+H +GDR ++PAI ASSG+T+RHL L+G GIACLS Sbjct: 181 TAEDLAQHVLVGFTHVESLNQWPLRHAEGDRLSIKPAISASSGDTLRHLVLEGVGIACLS 240 Query: 241 DFMTAADLAASRLVRLLDHYDSGFRQKISAVYYHNTQLSRRISCFLDFLQCKL 293 DFMT DL RLV LL +SG+RQ I AVYY N++L+ RI CFLDF+Q KL Sbjct: 241 DFMTNDDLREGRLVCLLKGANSGYRQPIHAVYYRNSRLALRIQCFLDFMQEKL 293 >ref|ZP_07003472.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gb|EFI01111.1| Transcriptional regulator, LysR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 298 Score = 357 bits (916), Expect = 1e-96, Method: Composition-based stats. Identities = 180/293 (61%), Positives = 225/293 (76%) Query: 1 MSIQSEELRTFVAVVEAGTLSAAAEVLEQTTSGVSRALTRLEEKLGTSLLTRTTRRMDLT 60 M +S+EL+ FV+V+E+G++SAAAE + QT SGVSR L+RLE KL T+L+ RTTRRMDLT Sbjct: 1 MKARSDELQVFVSVIESGSISAAAEKMGQTPSGVSRTLSRLEAKLETTLINRTTRRMDLT 60 Query: 61 EEGQVFLEQAREIVAAMERAEESIRIRSQKPVGKLRVDAAVPFMLHCVVPHVGAFRAAYP 120 EEG+ FLE+AR I+ ME EE + Q P G+LR++AA PFMLHC+VPHV FR YP Sbjct: 61 EEGKFFLERARHILEQMESLEERLSSSRQTPAGRLRINAASPFMLHCIVPHVAEFRQRYP 120 Query: 121 EIELELTTNDRFIDLVEQRADIAIRIGELQDSTLHAKPLTSARLQLLASPEYLRRHGTPK 180 +IELEL ++D FIDL+EQ DIAIRIG L DSTLHA+ L S L ++ASP YL+RHGTPK Sbjct: 121 DIELELNSDDWFIDLLEQSTDIAIRIGALPDSTLHARSLGSCPLNIVASPAYLQRHGTPK 180 Query: 181 TVKDLDKHQLIGFTQPEGLNNWPLQHEDGDRYQVRPAIRASSGETIRHLALQGQGIACLS 240 T +DL +H L+GFT E LN WPL+H +GDR ++PAI ASSG+T+R+L L+G GIACLS Sbjct: 181 TAEDLAQHVLVGFTHVESLNQWPLRHAEGDRLSIKPAISASSGDTLRYLVLEGVGIACLS 240 Query: 241 DFMTAADLAASRLVRLLDHYDSGFRQKISAVYYHNTQLSRRISCFLDFLQCKL 293 DFMT DL RLV LL +SG+RQ I AVYY N++L+ RI CFLDF+Q KL Sbjct: 241 DFMTNDDLREGRLVCLLKGANSGYRQPIHAVYYRNSRLALRIQCFLDFMQEKL 293 >ref|ZP_05641554.1| LysR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gb|EGH24264.1| LysR family transcriptional regulator [Pseudomonas syringae pv. mori str. 301020] gb|EGH86879.1| LysR family transcriptional regulator [Pseudomonas syringae pv. lachrymans str. M301315] gb|EGH88797.1| LysR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 298 Score = 357 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 180/293 (61%), Positives = 225/293 (76%) Query: 1 MSIQSEELRTFVAVVEAGTLSAAAEVLEQTTSGVSRALTRLEEKLGTSLLTRTTRRMDLT 60 M +S+EL+ FV+V+E+G++SAAAE + QT SGVSR L+RLE KL T+L+ RTTRRMDLT Sbjct: 1 MKARSDELQVFVSVIESGSISAAAEKMGQTPSGVSRTLSRLEAKLETTLINRTTRRMDLT 60 Query: 61 EEGQVFLEQAREIVAAMERAEESIRIRSQKPVGKLRVDAAVPFMLHCVVPHVGAFRAAYP 120 EEG+ FLE+AR I+ ME EE + Q P G+LR++AA PFMLHC+VPHV FR YP Sbjct: 61 EEGKFFLERARHILEQMESLEERLSSSRQTPAGRLRINAASPFMLHCIVPHVAEFRQRYP 120 Query: 121 EIELELTTNDRFIDLVEQRADIAIRIGELQDSTLHAKPLTSARLQLLASPEYLRRHGTPK 180 +IELEL ++D FIDL+EQ DIAIRIG L DSTLHA+ L S L ++ASP YL+RHG+PK Sbjct: 121 DIELELNSDDWFIDLLEQSTDIAIRIGVLPDSTLHARSLGSCLLNIVASPAYLQRHGSPK 180 Query: 181 TVKDLDKHQLIGFTQPEGLNNWPLQHEDGDRYQVRPAIRASSGETIRHLALQGQGIACLS 240 T +DL +H L+GFT E LN WPL+H +GDR ++PAI ASSG+T+RHL L+G GIACLS Sbjct: 181 TAEDLAQHVLVGFTHVESLNQWPLRHAEGDRLSIKPAISASSGDTLRHLVLEGVGIACLS 240 Query: 241 DFMTAADLAASRLVRLLDHYDSGFRQKISAVYYHNTQLSRRISCFLDFLQCKL 293 DFMT DL RLV LL +SG+RQ I AVYY N++L+ RI CFLDF+Q KL Sbjct: 241 DFMTNDDLREGRLVCLLKGANSGYRQPIHAVYYRNSRLALRIQCFLDFMQEKL 293