BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3441.p (298 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001187295.1| LysR family transcriptional regulator [Pseud... 398 e-109 ref|YP_004380834.1| LysR family transcriptional regulator [Pseud... 396 e-108 ref|NP_250113.1| GbuR [Pseudomonas aeruginosa PAO1] >gi|10710085... 396 e-108 gb|AAT51294.1| PA1422 [synthetic construct] 395 e-108 ref|YP_791829.1| transcriptional regulator [Pseudomonas aerugino... 393 e-107 >ref|YP_001187295.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp] gb|ABP84563.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp] Length = 299 Score = 398 bits (1022), Expect = e-109, Method: Composition-based stats. Identities = 196/293 (66%), Positives = 237/293 (80%), Gaps = 3/293 (1%) Query: 1 MTPGI---DFKLLRIFAAVVRHQGFARAQQELNLTTSAISTYMAQLESDVGFTVCRRGRG 57 MTP D KLLRIFA VVRHQGFA AQQELNL+TSAISTYM+QLE+ +G +C RGRG Sbjct: 1 MTPPTSLPDLKLLRIFACVVRHQGFAAAQQELNLSTSAISTYMSQLETQLGIVLCHRGRG 60 Query: 58 GFALTDKGELLLSETLRVLGEVDSFERYTQSLKGELGGTLKIGVLDTTVTDPSLPMAEAI 117 GF+LT KGEL ETLR+LGE++ FERY+ +LKGEL GTL +GVLD+TV+D +LP+AE I Sbjct: 61 GFSLTSKGELFHQETLRLLGELEGFERYSAALKGELRGTLNLGVLDSTVSDTALPLAEVI 120 Query: 118 GMFSSKFPGMHLNLLIRSPYELQKGVLDNDLDIAVGFFPAKANGLIYQPLYREQQWLYCS 177 G +S ++PG+HL+L + SPYELQ VLDN LD+A+G F + NGL+YQPLYREQ WLYCS Sbjct: 121 GAYSQEYPGVHLHLSVMSPYELQLAVLDNRLDLAIGAFSTRMNGLVYQPLYREQHWLYCS 180 Query: 178 DRHPCFQQRNLRASAVSEMSVVSRSYWSQTELSRHGFKRSVATVESMEAQLILILSGRYI 237 +RH F+QR + A +++ +V R YWSQ EL+RHGFK S ATVESMEAQLIL+LSG YI Sbjct: 181 ERHSLFEQRRIPAEVITQQRMVGRGYWSQAELARHGFKHSAATVESMEAQLILVLSGAYI 240 Query: 238 GYLPEHYAQSWVEQGRLKVLLPSEFGYQSQFSLVLRRGRSRELPLQAMRELLQ 290 GYLPEHYAQ WVEQ RLKVLLP+ FGYQ+ FSL+LRRGRSRE +Q R+LL+ Sbjct: 241 GYLPEHYAQPWVEQKRLKVLLPTTFGYQAPFSLILRRGRSREPLIQTFRDLLK 293 >ref|YP_004380834.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01] gb|AEB59082.1| LysR family transcriptional regulator [Pseudomonas mendocina NK-01] Length = 297 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 191/286 (66%), Positives = 235/286 (82%) Query: 6 DFKLLRIFAAVVRHQGFARAQQELNLTTSAISTYMAQLESDVGFTVCRRGRGGFALTDKG 65 D KLL+IF AVVRHQGFA AQQELNL+TSAISTYM+QLES +G +C RGRGGF+LT KG Sbjct: 7 DLKLLKIFVAVVRHQGFASAQQELNLSTSAISTYMSQLESQLGIVLCHRGRGGFSLTSKG 66 Query: 66 ELLLSETLRVLGEVDSFERYTQSLKGELGGTLKIGVLDTTVTDPSLPMAEAIGMFSSKFP 125 EL ETLR+LGE++ FERY+ +LKGEL GTL +GVLD+TV+DP+LP+AE IG +S + P Sbjct: 67 ELFHQETLRLLGELEGFERYSAALKGELRGTLNLGVLDSTVSDPALPLAEVIGAYSQEHP 126 Query: 126 GMHLNLLIRSPYELQKGVLDNDLDIAVGFFPAKANGLIYQPLYREQQWLYCSDRHPCFQQ 185 G+HL+L + SPYELQ VLDN LD+A+G F + NGL+YQPLYREQ WLYCS+RH F+Q Sbjct: 127 GVHLHLSVMSPYELQLAVLDNRLDLAIGAFSTRMNGLVYQPLYREQHWLYCSERHALFEQ 186 Query: 186 RNLRASAVSEMSVVSRSYWSQTELSRHGFKRSVATVESMEAQLILILSGRYIGYLPEHYA 245 R + +++ +V R YWSQ EL+RHGFK S ATVESMEAQLIL+LSG YIGYLPEHYA Sbjct: 187 RRIPEELITQQRMVGRGYWSQAELARHGFKHSAATVESMEAQLILVLSGAYIGYLPEHYA 246 Query: 246 QSWVEQGRLKVLLPSEFGYQSQFSLVLRRGRSRELPLQAMRELLQT 291 Q WV+QG+L+VLLP+ FGYQ+ FSL+LRRGR+RE +Q R+LL+T Sbjct: 247 QHWVDQGKLRVLLPAVFGYQAPFSLILRRGRTREPLIQTFRDLLKT 292 >ref|NP_250113.1| GbuR [Pseudomonas aeruginosa PAO1] ref|ZP_01364775.1| hypothetical protein PaerPA_01001887 [Pseudomonas aeruginosa PACS2] ref|YP_001349271.1| transcriptional regulator [Pseudomonas aeruginosa PA7] ref|ZP_04927844.1| GbuR [Pseudomonas aeruginosa C3719] ref|ZP_04933095.1| GbuR [Pseudomonas aeruginosa 2192] gb|AAG04811.1|AE004571_10 GbuR [Pseudomonas aeruginosa PAO1] gb|EAZ51963.1| GbuR [Pseudomonas aeruginosa C3719] gb|EAZ57214.1| GbuR [Pseudomonas aeruginosa 2192] gb|ABR80802.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] gb|EGM20016.1| transcriptional regulator [Pseudomonas aeruginosa 138244] gb|AEO76190.1| GbuR [Pseudomonas aeruginosa M18] Length = 297 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 193/286 (67%), Positives = 233/286 (81%) Query: 6 DFKLLRIFAAVVRHQGFARAQQELNLTTSAISTYMAQLESDVGFTVCRRGRGGFALTDKG 65 D +LLRIFAAVVRHQGFA AQQELNL+TSAISTYM+QLE+ +G +C RGRGGF+LT KG Sbjct: 7 DLRLLRIFAAVVRHQGFAAAQQELNLSTSAISTYMSQLENQLGIVLCHRGRGGFSLTSKG 66 Query: 66 ELLLSETLRVLGEVDSFERYTQSLKGELGGTLKIGVLDTTVTDPSLPMAEAIGMFSSKFP 125 EL ETLR+LGE++ FERY +LKGEL GTL +GVLD+TV+DP+LP+AE IG FS + P Sbjct: 67 ELFHQETLRILGELEGFERYALALKGELRGTLNLGVLDSTVSDPALPLAEVIGAFSREHP 126 Query: 126 GMHLNLLIRSPYELQKGVLDNDLDIAVGFFPAKANGLIYQPLYREQQWLYCSDRHPCFQQ 185 +HL+LL++SPYELQ VL+N D+A+G F ++ NGL+YQPLYREQ WLYCSDRHP F Sbjct: 127 AVHLHLLVQSPYELQLSVLENRQDLAIGAFSSRMNGLVYQPLYREQHWLYCSDRHPLFDG 186 Query: 186 RNLRASAVSEMSVVSRSYWSQTELSRHGFKRSVATVESMEAQLILILSGRYIGYLPEHYA 245 R + A +++ +V R YWSQ EL+RHGFK S TVESMEAQLILILSG YIGYLPEHYA Sbjct: 187 RRIPADLITQQRMVGRGYWSQAELARHGFKHSAGTVESMEAQLILILSGGYIGYLPEHYA 246 Query: 246 QSWVEQGRLKVLLPSEFGYQSQFSLVLRRGRSRELPLQAMRELLQT 291 WVEQGRL+ LLP+ FGYQ+ FSL+LRRGRSRE +QA R+ L+T Sbjct: 247 HPWVEQGRLRALLPATFGYQAPFSLILRRGRSREPLIQAFRDQLRT 292 >gb|AAT51294.1| PA1422 [synthetic construct] Length = 298 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 193/286 (67%), Positives = 232/286 (81%) Query: 6 DFKLLRIFAAVVRHQGFARAQQELNLTTSAISTYMAQLESDVGFTVCRRGRGGFALTDKG 65 D +LLRIFAAVVRHQGFA AQQELNL+TSAISTYM+QLE+ +G +C RGRGGF+LT KG Sbjct: 7 DLRLLRIFAAVVRHQGFAAAQQELNLSTSAISTYMSQLENQLGIVLCHRGRGGFSLTSKG 66 Query: 66 ELLLSETLRVLGEVDSFERYTQSLKGELGGTLKIGVLDTTVTDPSLPMAEAIGMFSSKFP 125 EL ETLR+LGE++ FERY +LKGEL GTL +GVLD TV+DP+LP+AE IG FS + P Sbjct: 67 ELFHQETLRILGELEGFERYALALKGELRGTLNLGVLDPTVSDPALPLAEVIGAFSREHP 126 Query: 126 GMHLNLLIRSPYELQKGVLDNDLDIAVGFFPAKANGLIYQPLYREQQWLYCSDRHPCFQQ 185 +HL+LL++SPYELQ VL+N D+A+G F ++ NGL+YQPLYREQ WLYCSDRHP F Sbjct: 127 AVHLHLLVQSPYELQLSVLENRQDLAIGAFSSRMNGLVYQPLYREQHWLYCSDRHPLFDG 186 Query: 186 RNLRASAVSEMSVVSRSYWSQTELSRHGFKRSVATVESMEAQLILILSGRYIGYLPEHYA 245 R + A +++ +V R YWSQ EL+RHGFK S TVESMEAQLILILSG YIGYLPEHYA Sbjct: 187 RRIPADLITQQRMVGRGYWSQAELARHGFKHSAGTVESMEAQLILILSGGYIGYLPEHYA 246 Query: 246 QSWVEQGRLKVLLPSEFGYQSQFSLVLRRGRSRELPLQAMRELLQT 291 WVEQGRL+ LLP+ FGYQ+ FSL+LRRGRSRE +QA R+ L+T Sbjct: 247 HPWVEQGRLRALLPATFGYQAPFSLILRRGRSREPLIQAFRDQLRT 292 >ref|YP_791829.1| transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] ref|YP_002441574.1| GbuR [Pseudomonas aeruginosa LESB58] ref|ZP_06879687.1| GbuR [Pseudomonas aeruginosa PAb1] ref|ZP_07792648.1| transcriptional regulator [Pseudomonas aeruginosa 39016] gb|ABJ10604.1| transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] emb|CAW28745.1| GbuR [Pseudomonas aeruginosa LESB58] gb|EFQ37744.1| transcriptional regulator [Pseudomonas aeruginosa 39016] gb|EGM20456.1| GbuR [Pseudomonas aeruginosa 152504] dbj|GAA16952.1| transcriptional regulator GbuR [Pseudomonas aeruginosa NCMG1179] dbj|BAK89162.1| transcriptional regulator [Pseudomonas aeruginosa NCGM2.S1] Length = 297 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 192/286 (67%), Positives = 232/286 (81%) Query: 6 DFKLLRIFAAVVRHQGFARAQQELNLTTSAISTYMAQLESDVGFTVCRRGRGGFALTDKG 65 D +LLRIFAAVVRHQGFA AQQELNL+TSAISTYM+QLE+ +G +C RGRGGF+LT KG Sbjct: 7 DLRLLRIFAAVVRHQGFAAAQQELNLSTSAISTYMSQLENQLGIVLCHRGRGGFSLTSKG 66 Query: 66 ELLLSETLRVLGEVDSFERYTQSLKGELGGTLKIGVLDTTVTDPSLPMAEAIGMFSSKFP 125 EL ETLR+LGE++ F RY +LKGEL GTL +GVLD+TV+DP+LP+AE IG FS + P Sbjct: 67 ELFHQETLRILGELEGFGRYALALKGELRGTLNLGVLDSTVSDPALPLAEVIGAFSREHP 126 Query: 126 GMHLNLLIRSPYELQKGVLDNDLDIAVGFFPAKANGLIYQPLYREQQWLYCSDRHPCFQQ 185 +HL+LL++SPYELQ VL+N D+A+G F ++ NGL+YQPLYREQ WLYCSDRHP F Sbjct: 127 AVHLHLLVQSPYELQLSVLENRQDLAIGAFSSRMNGLVYQPLYREQHWLYCSDRHPLFDG 186 Query: 186 RNLRASAVSEMSVVSRSYWSQTELSRHGFKRSVATVESMEAQLILILSGRYIGYLPEHYA 245 R + A +++ +V R YWSQ EL+RHGFK S TVESMEAQLILILSG YIGYLPEHYA Sbjct: 187 RRIPADLITQQRMVGRGYWSQAELARHGFKHSAGTVESMEAQLILILSGGYIGYLPEHYA 246 Query: 246 QSWVEQGRLKVLLPSEFGYQSQFSLVLRRGRSRELPLQAMRELLQT 291 WVEQGRL+ LLP+ FGYQ+ FSL+LRRGRSRE +QA R+ L+T Sbjct: 247 HPWVEQGRLRALLPATFGYQAPFSLILRRGRSREPLIQAFRDQLRT 292