BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3439.p         (221 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_08209536.1| hypothetical protein Y88_0845 [Novosphingobiu...   271   6e-71
ref|YP_002237021.1| AP endonuclease, family 2 [Klebsiella pneumo...   244   7e-63
ref|ZP_08307579.1| AP endonuclease, family 2 [Klebsiella sp. MS ...   243   1e-62
ref|YP_001336610.1| putative xylose isomerase-like protein [Kleb...   243   2e-62
ref|YP_002920831.1| putative xylose isomerase-like protein [Kleb...   243   2e-62

>ref|ZP_08209536.1| hypothetical protein Y88_0845 [Novosphingobium nitrogenifigens DSM
           19370]
 gb|EGD58787.1| hypothetical protein Y88_0845 [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 286

 Score =  271 bits (692), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 130/177 (73%), Positives = 149/177 (84%)

Query: 30  PLAEQVDFLGRAQALADDAGVPCSFETHRASSLYSPWVTLDIVRQLPRLRYTADISHWVV 89
           PLA+QV+F GRAQ LAD AG  CSFE HRA+SLYSPWV L+++ QLP LR+T+DISHWVV
Sbjct: 106 PLAKQVEFFGRAQELADGAGAICSFEIHRATSLYSPWVALEVIAQLPDLRFTSDISHWVV 165

Query: 90  VCERLLDDPLDDLTPFLERVHHVQARVGYAQGPQVPDPAAPEYAPELAFHQRIWETIWSF 149
           VCERLLDDP DDL+PFLERVHHVQARVGY QGPQVP PAAPEYA  LAFHQ +WE IW+ 
Sbjct: 166 VCERLLDDPADDLSPFLERVHHVQARVGYDQGPQVPHPAAPEYAGALAFHQGVWERIWAS 225

Query: 150 QHASGYAISTLTPEFGPDGYLHLLPYTRSPVADLWQLNRWMAQQERAHFARWSQQHG 206
           Q A GYA++TLTPEFGPDGY HLLP+T++P+AD W LN+WMA+ ER HF RW  Q G
Sbjct: 226 QQARGYAVTTLTPEFGPDGYTHLLPFTQAPIADTWALNQWMARVERDHFDRWQLQQG 282


>ref|YP_002237021.1| AP endonuclease, family 2 [Klebsiella pneumoniae 342]
 gb|ACI10436.1| AP endonuclease, family 2 [Klebsiella pneumoniae 342]
          Length = 287

 Score =  244 bits (623), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 117/172 (68%), Positives = 140/172 (81%)

Query: 30  PLAEQVDFLGRAQALADDAGVPCSFETHRASSLYSPWVTLDIVRQLPRLRYTADISHWVV 89
           PLA+QVDFLG+A  LA   G+ CSFETHRA+SLYSPW+TL+I++QLP+LR+TADISHWVV
Sbjct: 106 PLAQQVDFLGKAHELAAGFGLTCSFETHRATSLYSPWLTLEIIQQLPQLRFTADISHWVV 165

Query: 90  VCERLLDDPLDDLTPFLERVHHVQARVGYAQGPQVPDPAAPEYAPELAFHQRIWETIWSF 149
           V ERLLDDP DD + F++RVHHVQARVGY QGPQVP PAAPEY P LAF +R W+ +W  
Sbjct: 166 VSERLLDDPCDDFSAFIDRVHHVQARVGYDQGPQVPHPAAPEYQPALAFAERFWQQVWHS 225

Query: 150 QHASGYAISTLTPEFGPDGYLHLLPYTRSPVADLWQLNRWMAQQERAHFARW 201
           Q   GY  +TLTPEFG DGYLH LP+T  PVADLW LN WMA +++AHF ++
Sbjct: 226 QRQRGYPQTTLTPEFGADGYLHHLPFTNVPVADLWSLNAWMAARQQAHFQQF 277


>ref|ZP_08307579.1| AP endonuclease, family 2 [Klebsiella sp. MS 92-3]
 gb|EGF60302.1| AP endonuclease, family 2 [Klebsiella sp. MS 92-3]
          Length = 287

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 118/172 (68%), Positives = 140/172 (81%)

Query: 30  PLAEQVDFLGRAQALADDAGVPCSFETHRASSLYSPWVTLDIVRQLPRLRYTADISHWVV 89
           PLA+QVDFLG+A  LA   G+ CSFETHRA+SLYSPW+TL+I++QLP+LR+TADISHWVV
Sbjct: 106 PLAQQVDFLGKAHELAAGFGLTCSFETHRATSLYSPWLTLEIIQQLPQLRFTADISHWVV 165

Query: 90  VCERLLDDPLDDLTPFLERVHHVQARVGYAQGPQVPDPAAPEYAPELAFHQRIWETIWSF 149
           V ERLLDDP DD + F++RVHHVQARVGY QGPQVP PAAPEY P LAF +R W+ IW  
Sbjct: 166 VSERLLDDPSDDFSAFIDRVHHVQARVGYDQGPQVPHPAAPEYQPALAFAERFWQQIWRS 225

Query: 150 QHASGYAISTLTPEFGPDGYLHLLPYTRSPVADLWQLNRWMAQQERAHFARW 201
           Q   GY  +TLTPEFG DGYLH LP+T  PVADLW LN WMA +++AHF ++
Sbjct: 226 QRQRGYPQTTLTPEFGADGYLHHLPFTNVPVADLWSLNAWMATRQQAHFQQF 277


>ref|YP_001336610.1| putative xylose isomerase-like protein [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 ref|ZP_06016968.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gb|ABR78380.1| putative xylose isomerase-like protein [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gb|EEW39917.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 287

 Score =  243 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 118/172 (68%), Positives = 140/172 (81%)

Query: 30  PLAEQVDFLGRAQALADDAGVPCSFETHRASSLYSPWVTLDIVRQLPRLRYTADISHWVV 89
           PLA+QVDFLG+A  LA   G+ CSFETHRA+SLYSPW+TL+I++QLP+LR+TADISHWVV
Sbjct: 106 PLAQQVDFLGKAHELAAGFGLTCSFETHRATSLYSPWLTLEIIQQLPQLRFTADISHWVV 165

Query: 90  VCERLLDDPLDDLTPFLERVHHVQARVGYAQGPQVPDPAAPEYAPELAFHQRIWETIWSF 149
           V ERLLDDP DD + F++RVHHVQARVGY QGPQVP PAAPEY P LAF +R W+ IW  
Sbjct: 166 VSERLLDDPSDDFSAFIDRVHHVQARVGYDQGPQVPHPAAPEYQPALAFAERFWQQIWRS 225

Query: 150 QHASGYAISTLTPEFGPDGYLHLLPYTRSPVADLWQLNRWMAQQERAHFARW 201
           Q   GY  +TLTPEFG DGYLH LP+T  PVADLW LN WMA +++AHF ++
Sbjct: 226 QRQRGYPQTTLTPEFGADGYLHHLPFTNVPVADLWSLNAWMATRQQAHFQQF 277


>ref|YP_002920831.1| putative xylose isomerase-like protein [Klebsiella pneumoniae
           NTUH-K2044]
 dbj|BAH64764.1| putative xylose isomerase-like protein [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
          Length = 287

 Score =  243 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 118/172 (68%), Positives = 140/172 (81%)

Query: 30  PLAEQVDFLGRAQALADDAGVPCSFETHRASSLYSPWVTLDIVRQLPRLRYTADISHWVV 89
           PLA+QVDFLG+A  LA   G+ CSFETHRA+SLYSPW+TL+I++QLP+LR+TADISHWVV
Sbjct: 106 PLAQQVDFLGKAHELAAGFGLTCSFETHRATSLYSPWLTLEIIQQLPQLRFTADISHWVV 165

Query: 90  VCERLLDDPLDDLTPFLERVHHVQARVGYAQGPQVPDPAAPEYAPELAFHQRIWETIWSF 149
           V ERLLDDP DD + F++RVHHVQARVGY QGPQVP PAAPEY P LAF +R W+ IW  
Sbjct: 166 VSERLLDDPSDDFSAFIDRVHHVQARVGYDQGPQVPHPAAPEYQPALAFAERFWQQIWRS 225

Query: 150 QHASGYAISTLTPEFGPDGYLHLLPYTRSPVADLWQLNRWMAQQERAHFARW 201
           Q   GY  +TLTPEFG DGYLH LP+T  PVADLW LN WMA +++AHF ++
Sbjct: 226 QRQRGYPQTTLTPEFGADGYLHHLPFTNVPVADLWSLNAWMAARQQAHFQQF 277