BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3437.p (270 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004481258.1| ABC transporter periplasmic protein [Marinom... 289 4e-76 ref|YP_004313760.1| ABC-type transporter periplasmic subunit fam... 288 5e-76 ref|YP_002237019.1| amino acid ABC transporter periplasmic amino... 286 2e-75 ref|ZP_06550319.1| amino acid ABC transporter, periplasmic amino... 286 2e-75 ref|YP_045990.1| amino acid ABC transporter periplasmic substrat... 285 4e-75 >ref|YP_004481258.1| ABC transporter periplasmic protein [Marinomonas posidonica IVIA-Po-181] gb|AEF54339.1| ABC-type transporter, periplasmic subunit family 3 [Marinomonas posidonica IVIA-Po-181] Length = 265 Score = 289 bits (739), Expect = 4e-76, Method: Composition-based stats. Identities = 145/250 (58%), Positives = 182/250 (72%) Query: 17 LALSALLPVAASAQTMVPGQLKVGMEITYPPFESWQGDKVVGFDPDIAEMLGRELKLRPS 76 L L A +A T+ G+L +GMEITYPPFES+ GDKVVGFDP++ +L +++ + PS Sbjct: 15 LTAGVLSQTAFAATTLTEGELVIGMEITYPPFESYDGDKVVGFDPELTALLSKKMNVTPS 74 Query: 77 FIDTKFPSLILGLGGGQFDAIISGMYITPERTAQADAIAYGKTGAAIMVAKDGGVMPKSE 136 F D KF LILGL +FDA+ISGMY+ ER +ADA+ Y +TGAAIMV K + P+++ Sbjct: 75 FSDNKFTGLILGLSANKFDAVISGMYVKEERLKKADAVPYARTGAAIMVPKGSAIQPRTD 134 Query: 137 NDLCGLKVGLQAGTSWVNALKKLSAEYCVPQGKPAVAVSEFPTAPEASQALLSKNIQAQM 196 DLCG+KVGLQ GTSWV A K+LS YCVP G V V EFP+APEA+QA+LS+NI AQ+ Sbjct: 135 KDLCGVKVGLQQGTSWVKAFKELSDTYCVPNGMKPVFVQEFPSAPEATQAMLSRNIDAQV 194 Query: 197 EIAGAAKMLAERSKGRIVISSQALVYPQTLGIYVKKGNAALYQALQKALAAGHASGEYAA 256 EIAGAA M +R+KGRI ISS L+YP TLGIYVKKGN L A +KA+A A G YA Sbjct: 195 EIAGAANMFVKRTKGRIQISSDDLIYPSTLGIYVKKGNHKLKAAFEKAMAEIKADGSYAK 254 Query: 257 LIKKYDLEPV 266 L++KY+L PV Sbjct: 255 LLEKYELSPV 264 >ref|YP_004313760.1| ABC-type transporter periplasmic subunit family 3 [Marinomonas mediterranea MMB-1] gb|ADZ91924.1| ABC-type transporter, periplasmic subunit family 3 [Marinomonas mediterranea MMB-1] Length = 264 Score = 288 bits (737), Expect = 5e-76, Method: Composition-based stats. Identities = 149/250 (59%), Positives = 186/250 (74%), Gaps = 1/250 (0%) Query: 18 ALSA-LLPVAASAQTMVPGQLKVGMEITYPPFESWQGDKVVGFDPDIAEMLGRELKLRPS 76 ALSA +L A A T+ G+L +GMEITYPPFES+ GD+VVGFDP++ +L ++ + S Sbjct: 14 ALSAGVLAQTAVAGTLTEGKLIIGMEITYPPFESYDGDEVVGFDPELTALLAAKMGVEES 73 Query: 77 FIDTKFPSLILGLGGGQFDAIISGMYITPERTAQADAIAYGKTGAAIMVAKDGGVMPKSE 136 F D KF LILGLG +FDA+ISGMYI ER QADA+ Y +TGA+IMV K+ +MPK++ Sbjct: 74 FSDNKFTGLILGLGANKFDAVISGMYIKDERLKQADAVPYARTGASIMVPKNSKIMPKTD 133 Query: 137 NDLCGLKVGLQAGTSWVNALKKLSAEYCVPQGKPAVAVSEFPTAPEASQALLSKNIQAQM 196 +LCG+KVGLQ GTSWV A K LS YCVP G V V EFP+APEA+QA+LS N++AQ+ Sbjct: 134 KELCGVKVGLQQGTSWVKAFKNLSDSYCVPNGLKPVVVQEFPSAPEATQAMLSGNVEAQV 193 Query: 197 EIAGAAKMLAERSKGRIVISSQALVYPQTLGIYVKKGNAALYQALQKALAAGHASGEYAA 256 EIAGAAKM +R+KGRI +SS L+YP TLGIYVKKGNA L A +KA+A A G Y Sbjct: 194 EIAGAAKMFIQRTKGRIQVSSTDLIYPNTLGIYVKKGNAELKSAFEKAMAEIKADGSYMK 253 Query: 257 LIKKYDLEPV 266 LI+KY+L PV Sbjct: 254 LIEKYELSPV 263 >ref|YP_002237019.1| amino acid ABC transporter periplasmic amino acid-binding protein [Klebsiella pneumoniae 342] ref|YP_003438032.1| family 3 extracellular solute-binding protein [Klebsiella variicola At-22] gb|ACI08105.1| amino acid ABC transporter, periplasmic amino acid-binding protein [Klebsiella pneumoniae 342] gb|ADC57020.1| extracellular solute-binding protein family 3 [Klebsiella variicola At-22] gb|AEJ99456.1| extracellular solute-binding protein family 3 [Klebsiella pneumoniae KCTC 2242] Length = 267 Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats. Identities = 155/268 (57%), Positives = 204/268 (76%), Gaps = 4/268 (1%) Query: 1 MTHPLRRISFKRHLLTLALSALL-PVAASAQTMVPGQLKVGMEITYPPFESW-QGDKVVG 58 MT L++IS +R LTLA+SA PV +A+ + G KVGME+TYPPFES+ + +VG Sbjct: 1 MTSTLKKIS-RRVALTLAVSACFSPVTQAAELLTEGVFKVGMEVTYPPFESYDSNNNIVG 59 Query: 59 FDPDIAEMLGRELKLRPSFIDTKFPSLILGLGGGQFDAIISGMYITPERTAQADAIAYGK 118 DPD A ++ + L+ +P IDTKF SLILG+G ++DA+ISGMY+TPER QADAI Y Sbjct: 60 LDPDFAALIAQHLQAKPQLIDTKFTSLILGIGK-KYDAVISGMYVTPERQKQADAIPYAL 118 Query: 119 TGAAIMVAKDGGVMPKSENDLCGLKVGLQAGTSWVNALKKLSAEYCVPQGKPAVAVSEFP 178 +GA+I+ K G V PK+E++LCG+KVGLQAGT+WV +LKK S E+C+ GKPA+ + EFP Sbjct: 119 SGASIIALKGGAVQPKTEDELCGVKVGLQAGTTWVTSLKKHSDEWCLKNGKPAITIQEFP 178 Query: 179 TAPEASQALLSKNIQAQMEIAGAAKMLAERSKGRIVISSQALVYPQTLGIYVKKGNAALY 238 TAPEASQALLSKNI AQ+EIA AA+++ ++S+GR+ ISS LVYP LGIYV KGN L Sbjct: 179 TAPEASQALLSKNIGAQLEIAPAAQIIVDKSRGRLGISSTRLVYPLPLGIYVAKGNTELA 238 Query: 239 QALQKALAAGHASGEYAALIKKYDLEPV 266 +A++ LAA A+G+YAALIKKY+LE + Sbjct: 239 EAIKATLAALKANGQYAALIKKYNLESI 266 >ref|ZP_06550319.1| amino acid ABC transporter, periplasmic amino acid-binding protein [Klebsiella sp. 1_1_55] gb|EFD83942.1| amino acid ABC transporter, periplasmic amino acid-binding protein [Klebsiella sp. 1_1_55] Length = 268 Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats. Identities = 155/268 (57%), Positives = 204/268 (76%), Gaps = 4/268 (1%) Query: 1 MTHPLRRISFKRHLLTLALSALL-PVAASAQTMVPGQLKVGMEITYPPFESW-QGDKVVG 58 MT L++IS +R LTLA+SA PV +A+ + G KVGME+TYPPFES+ + +VG Sbjct: 2 MTSTLKKIS-RRVALTLAVSACFSPVTQAAELLTEGVFKVGMEVTYPPFESYDSNNNIVG 60 Query: 59 FDPDIAEMLGRELKLRPSFIDTKFPSLILGLGGGQFDAIISGMYITPERTAQADAIAYGK 118 DPD A ++ + L+ +P IDTKF SLILG+G ++DA+ISGMY+TPER QADAI Y Sbjct: 61 LDPDFAALIAQHLQAKPQLIDTKFTSLILGIGK-KYDAVISGMYVTPERQKQADAIPYAL 119 Query: 119 TGAAIMVAKDGGVMPKSENDLCGLKVGLQAGTSWVNALKKLSAEYCVPQGKPAVAVSEFP 178 +GA+I+ K G V PK+E++LCG+KVGLQAGT+WV +LKK S E+C+ GKPA+ + EFP Sbjct: 120 SGASIIALKGGAVQPKTEDELCGVKVGLQAGTTWVTSLKKHSDEWCLKNGKPAITIQEFP 179 Query: 179 TAPEASQALLSKNIQAQMEIAGAAKMLAERSKGRIVISSQALVYPQTLGIYVKKGNAALY 238 TAPEASQALLSKNI AQ+EIA AA+++ ++S+GR+ ISS LVYP LGIYV KGN L Sbjct: 180 TAPEASQALLSKNIGAQLEIAPAAQIIVDKSRGRLGISSTRLVYPLPLGIYVAKGNTELA 239 Query: 239 QALQKALAAGHASGEYAALIKKYDLEPV 266 +A++ LAA A+G+YAALIKKY+LE + Sbjct: 240 EAIKATLAALKANGQYAALIKKYNLESI 267 >ref|YP_045990.1| amino acid ABC transporter periplasmic substrate-binding protein [Acinetobacter sp. ADP1] emb|CAG68168.1| putative amino acid transporter (ABC superfamily, peri_bind) [Acinetobacter sp. ADP1] Length = 267 Score = 285 bits (730), Expect = 4e-75, Method: Composition-based stats. Identities = 146/267 (54%), Positives = 195/267 (73%), Gaps = 2/267 (0%) Query: 1 MTHPLRRISFKRHLLTLALSALLPVAASAQTMVPGQLKVGMEITYPPFESWQGDK-VVGF 59 M + S + L A++ ++ +A + G KVG+E TYPPFES+ +K +VG Sbjct: 1 MKQTFKNFSCRMALSVAAVTCFSSMSHAAPLLTNGVFKVGLEATYPPFESYDSNKNIVGL 60 Query: 60 DPDIAEMLGRELKLRPSFIDTKFPSLILGLGGGQFDAIISGMYITPERTAQADAIAYGKT 119 DPD A ++ ++L +P IDTKF SLILGLG ++DA+ISG+Y+TPER QADAI Y T Sbjct: 61 DPDFAALIAKDLNAKPQLIDTKFTSLILGLGK-KYDAVISGLYVTPERLKQADAIPYAMT 119 Query: 120 GAAIMVAKDGGVMPKSENDLCGLKVGLQAGTSWVNALKKLSAEYCVPQGKPAVAVSEFPT 179 GA+I+ K+ ++PK+ENDLCG+KVGLQ GT+WV +LKK S YC+ GKPA+ V EFPT Sbjct: 120 GASIIALKNSNILPKTENDLCGVKVGLQQGTAWVASLKKHSEAYCIKNGKPAIQVMEFPT 179 Query: 180 APEASQALLSKNIQAQMEIAGAAKMLAERSKGRIVISSQALVYPQTLGIYVKKGNAALYQ 239 APE SQAL+S+N+ AQ+EIA AAK+L E+S+GR+V+SS LVYP LGIYV KGN AL Sbjct: 180 APEVSQALMSRNVSAQLEIAPAAKILVEKSRGRLVVSSSRLVYPLPLGIYVTKGNTALVS 239 Query: 240 ALQKALAAGHASGEYAALIKKYDLEPV 266 A++ +LA A+G+Y+ALIKKY+LEPV Sbjct: 240 AIKSSLAKAKANGQYSALIKKYNLEPV 266