BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3433.p         (223 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776861.1| hypothetical protein Hsero_3474 [Herbaspiril...   284   8e-75

>ref|YP_003776861.1| hypothetical protein Hsero_3474 [Herbaspirillum seropedicae SmR1]
 gb|ADJ64953.1| hypothetical protein Hsero_3474 [Herbaspirillum seropedicae SmR1]
          Length = 223

 Score =  284 bits (726), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 138/220 (62%), Positives = 178/220 (80%)

Query: 1   MKKHGLLIDRFESLGFRLLPGQKINTSDISYFGCDDARETNIEAFIAVRYLSRTQRYEFD 60
           MKKH ++I++ E LGF  LP QK+N+SDISYF C+ +R T++E+ +AVRYLSRTQRYEFD
Sbjct: 1   MKKHRIVIEQLEGLGFSFLPEQKVNSSDISYFVCNGSRGTDVESLLAVRYLSRTQRYEFD 60

Query: 61  FGFESPDIRSFFLGQMPNLSLELKSAIEKMNQERPYCWFTLPLIWQSINYRLNLNTKEED 120
           FGF +  +RSFF  QMP L  E++ AI++MN+ERP CWFT PLIW SINYRLNL+TKE D
Sbjct: 61  FGFNASSVRSFFAHQMPYLPFEIRLAIDQMNKERPACWFTWPLIWDSINYRLNLSTKEPD 120

Query: 121 LTNLCAGALKSFKENVLLPVRTDKDLLDVCLSDIPPFEWKSSTSYFARFCQIAYLASNTN 180
           L ++ +G  K F E VLL VR+++ LLD+ LS+IPPFEW+  +S+FARFCQIAYL S+T 
Sbjct: 121 LPDIFSGPFKLFMEQVLLSVRSEEQLLDIYLSNIPPFEWRYDSSHFARFCQIAYLVSSTK 180

Query: 181 SDFDLAERRVSEQYRFMQASDLYGAKLKADFFTKLVEFIR 220
           S F+LAER +S+ YRFMQASDLYG++LK DFF +L+EFI+
Sbjct: 181 SRFELAERCLSDYYRFMQASDLYGSELKVDFFQELLEFIQ 220