BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3432.p         (234 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_788197.1| putative hemagglutinin [Pseudomonas aeruginosa ...   102   4e-20
ref|YP_606844.1| hypothetical protein PSEEN1135 [Pseudomonas ent...   102   5e-20
ref|YP_004672740.1| hypothetical protein SNE_A23720 [Simkania ne...    68   1e-09
ref|ZP_08662172.1| RHS repeat-associated core domain protein [St...    62   7e-08
ref|ZP_07052896.1| conserved hypothetical protein [Listeria gray...    61   1e-07

>ref|YP_788197.1| putative hemagglutinin [Pseudomonas aeruginosa UCBPP-PA14]
 gb|ABJ14998.1| putative hemagglutinin [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 3443

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 49/84 (58%), Positives = 63/84 (75%)

Query: 148  DLAPIASIVISGMRRPSLSGLSFGQMRTALETAQEAYKGSTAIGHALSKHAGRNPQIWGR 207
            +L   A++ + G R    S  +FGQ++T L+TAQ  YKGST IGHALSKHAGR+P+IWG+
Sbjct: 3323 ELGGAAAMALLGGRGSVGSNATFGQIKTVLDTAQAPYKGSTVIGHALSKHAGRHPEIWGK 3382

Query: 208  MSGAMKTWNAQAMTHFREIVRAPG 231
            + G+M  WN QAM HF+EIVRAPG
Sbjct: 3383 VKGSMSGWNEQAMKHFKEIVRAPG 3406


>ref|YP_606844.1| hypothetical protein PSEEN1135 [Pseudomonas entomophila L48]
 emb|CAK14033.1| conserved hypothetical protein; Rhs family protein [Pseudomonas
            entomophila L48]
          Length = 1550

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 46/81 (56%), Positives = 58/81 (71%)

Query: 151  PIASIVISGMRRPSLSGLSFGQMRTALETAQEAYKGSTAIGHALSKHAGRNPQIWGRMSG 210
            P+A +   G+   +    SFG+++T LE+AQ  YKG+T IGH LSKHAGRNP IWG+ +G
Sbjct: 1433 PVAWVDPLGLCACTKKPASFGEVKTVLESAQAPYKGTTVIGHGLSKHAGRNPDIWGKTTG 1492

Query: 211  AMKTWNAQAMTHFREIVRAPG 231
            +M TWN QAM H REI RAPG
Sbjct: 1493 SMATWNGQAMKHLREIARAPG 1513


>ref|YP_004672740.1| hypothetical protein SNE_A23720 [Simkania negevensis Z]
 emb|CCB90249.1| hypothetical protein SNE_A23720 [Simkania negevensis Z]
          Length = 2750

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/64 (43%), Positives = 42/64 (65%), Gaps = 1/64 (1%)

Query: 168  LSFGQMRTALETAQEAYKGS-TAIGHALSKHAGRNPQIWGRMSGAMKTWNAQAMTHFREI 226
            L+  Q +  L + +E Y  + T +GH+LSKHAGR+P IWG++ G MKTW+ Q   H ++I
Sbjct: 2648 LTLDQKKNLLLSTKEPYNQNLTRLGHSLSKHAGRHPNIWGQIKGPMKTWHNQGFQHLKDI 2707

Query: 227  VRAP 230
              +P
Sbjct: 2708 YNSP 2711


>ref|ZP_08662172.1| RHS repeat-associated core domain protein [Streptococcus sp. oral
           taxon 056 str. F0418]
 gb|EGP66612.1| RHS repeat-associated core domain protein [Streptococcus sp. oral
           taxon 056 str. F0418]
          Length = 729

 Score = 62.0 bits (149), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/46 (56%), Positives = 33/46 (71%)

Query: 186 GSTAIGHALSKHAGRNPQIWGRMSGAMKTWNAQAMTHFREIVRAPG 231
           G T  GHAL KHAGRNPQIWG + G  ++ N QAM H  +I+++PG
Sbjct: 646 GETIAGHALQKHAGRNPQIWGAVKGNSESINRQAMEHINDIIKSPG 691


>ref|ZP_07052896.1| conserved hypothetical protein [Listeria grayi DSM 20601]
 gb|EFI85263.1| conserved hypothetical protein [Listeria grayi DSM 20601]
          Length = 446

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/54 (51%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 179 TAQEAYKG-STAIGHALSKHAGRNPQIWGRMSGAMKTWNAQAMTHFREIVRAPG 231
           TAQ   KG  T +GHAL KHAGRNP IWG++ G     N  A+ H  E++ APG
Sbjct: 356 TAQIPKKGGETVVGHALQKHAGRNPDIWGKVKGNSNQINQTALKHLNEVLSAPG 409