BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3431.p         (158 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_606843.1| hypothetical protein PSEEN1134 [Pseudomonas ent...    75   4e-12
ref|ZP_05134234.1| conserved hypothetical protein [Stenotrophomo...    60   1e-07

>ref|YP_606843.1| hypothetical protein PSEEN1134 [Pseudomonas entomophila L48]
 emb|CAK14032.1| hypothetical protein PSEEN1134 [Pseudomonas entomophila L48]
          Length = 155

 Score = 75.1 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 52/155 (33%), Positives = 77/155 (49%), Gaps = 3/155 (1%)

Query: 1   MNNSFEVVFEKVPPQKIGELVSELLSHAGETECIEFSEENAGGDSRAFTPDELADKL-ST 59
           M+ S+EVV ++V    +  L+  +   +     +  SEE  GGD  A     L D   + 
Sbjct: 1   MSESYEVVLQQVAKSDLRVLLECIEMESQALSGLAVSEE-LGGDVSAGINKNLIDAFFAH 59

Query: 60  GPDLTAMILVRRFNTSAAI-IDLVLMRAIKYDNIIDLEISFDIDDGGKSTEIMQALHQYA 118
             D+  M  +  FN S  I + LV +R IKY   +D+E+SF+         +M A+  YA
Sbjct: 60  QGDVCLMERLHEFNVSGTIRLPLVFLRVIKYKGEVDVELSFNDAPSFDIDRVMLAMQGYA 119

Query: 119 LGIASSFSTGDVYGGMEPARDCATRYFTNSKSGPL 153
             ++  F   + YGG+EPA D  TRYFT +  GPL
Sbjct: 120 DELSKKFHINEFYGGLEPAADTDTRYFTGNTLGPL 154


>ref|ZP_05134234.1| conserved hypothetical protein [Stenotrophomonas sp. SKA14]
 gb|EED38295.1| conserved hypothetical protein [Stenotrophomonas sp. SKA14]
          Length = 165

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 75  SAAIIDLVLMRAIKYDNIIDLEISFDIDDGGKSTEIMQALHQYALGIASSFSTGDVYGGM 134
           SA  I  +L+R  ++D +  +++SFD+D        M  LH++ L +        VYGGM
Sbjct: 52  SAVHIPTLLIRVFRFDGLASIDLSFDMDWSNAGVA-MPMLHRHFLKLKLLTGARAVYGGM 110

Query: 135 EPARDCATRYFTNSKSGPLPFSE 157
           EPA+D  TR+FT+ + GPL  S+
Sbjct: 111 EPAQDLDTRFFTDDECGPLGISD 133