BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3427.p         (116 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001101840.1| hypothetical protein YR71pYR1_0146 [Yersinia...    54   8e-06

>ref|YP_001101840.1| hypothetical protein YR71pYR1_0146 [Yersinia ruckeri]
 gb|ABO40913.1| conserved hypothetical protein [Yersinia ruckeri]
          Length = 112

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 59/106 (55%), Gaps = 1/106 (0%)

Query: 11  LIRQLISWLVAGDYEAAQRRSRGIRLSADLMRDAVLRYGRTLVIPPDTAFAGIDAIEVRN 70
           L+++++  LV GD+++   R    RLS + ++ A+  +   + +PP  A+  I+  +V +
Sbjct: 8   LVKKMVEKLVNGDFDSLVLRGENGRLSVEEIKTAITDFSGLITLPPIQAYDSIEVYDVYD 67

Query: 71  AASPTWSVRFALWTAEEGRSDLSLECTLIDRGAGRIDLEIDNLHSL 116
           A+     V F LW   E +SDL++   +   G G++ L I+++H L
Sbjct: 68  ASCGARKVDFDLWFDNE-KSDLTVSMEVRMDGLGKLGLIIEDIHFL 112