BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3425.p (243 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776332.1| amino acid ABC transporter ATPase [Herbaspir... 417 e-115 ref|YP_004753590.1| putative amino-acid ATP-binding ABC transpor... 352 3e-95 gb|EGW60812.1| ABC transporter related protein [Dechlorosoma sui... 319 3e-85 emb|CBJ39677.1| Leucine/isoleucine/valine transporter subunit ; ... 304 8e-81 ref|YP_001892340.1| ABC transporter [Ralstonia pickettii 12J] >g... 303 1e-80 >ref|YP_003776332.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] gb|ADJ64424.1| ABC-type amino acid transport system, ATPase component protein [Herbaspirillum seropedicae SmR1] Length = 243 Score = 417 bits (1071), Expect = e-115, Method: Composition-based stats. Identities = 240/243 (98%), Positives = 242/243 (99%) Query: 1 MSASGNKQPILQVEDLAVAYGHIEAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLV 60 MSASGNKQPILQVEDLAVAYGHIEAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLV Sbjct: 1 MSASGNKQPILQVEDLAVAYGHIEAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLV 60 Query: 61 KAQRGRVLLNGQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLALGAYTRKDKEGVA 120 KAQRGRVLL+GQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENL LGAYTRKDK+GVA Sbjct: 61 KAQRGRVLLHGQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLGLGAYTRKDKDGVA 120 Query: 121 RDLEWVYSLFPVLKNRAAGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQ 180 RDLEWVYSLFPVLKNRAAGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQ Sbjct: 121 RDLEWVYSLFPVLKNRAAGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQ 180 Query: 181 EIFRIVQEINKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAY 240 EIFRIVQEINKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAY Sbjct: 181 EIFRIVQEINKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAY 240 Query: 241 LGG 243 LGG Sbjct: 241 LGG 243 >ref|YP_004753590.1| putative amino-acid ATP-binding ABC transporter protein [Collimonas fungivorans Ter331] gb|AEK62767.1| putative amino-acid ATP-binding ABC transporter protein [Collimonas fungivorans Ter331] Length = 249 Score = 352 bits (902), Expect = 3e-95, Method: Composition-based stats. Identities = 197/242 (81%), Positives = 220/242 (90%), Gaps = 4/242 (1%) Query: 6 NKQPILQVEDLAVAYGHIEAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQRG 65 N PILQV DLAV+YGHIEAVKGI L+LNEGEITALVGANGAGKST+LLAISGL+K RG Sbjct: 8 NATPILQVHDLAVSYGHIEAVKGIDLALNEGEITALVGANGAGKSTTLLAISGLLKPARG 67 Query: 66 RVLLNGQ----DLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLALGAYTRKDKEGVAR 121 +VLLN Q DL+++SPH+IV+SG+VQVAEGRATLTTL+V ENLALGAYTRKDK +A+ Sbjct: 68 QVLLNQQGQQQDLIRLSPHKIVQSGIVQVAEGRATLTTLSVAENLALGAYTRKDKAQIAQ 127 Query: 122 DLEWVYSLFPVLKNRAAGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQE 181 DL+WVYSLFPVL+ R GLAGNLSGGEQQMLAIGRALMAKP+VLLLDEPSMGLAPL++QE Sbjct: 128 DLDWVYSLFPVLQRRKDGLAGNLSGGEQQMLAIGRALMAKPRVLLLDEPSMGLAPLLVQE 187 Query: 182 IFRIVQEINKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYL 241 IFRIVQEIN+TG+T+LLVEQNVRQALRIAQ GYVLE GKIVL DSG NLL NPKV+EAYL Sbjct: 188 IFRIVQEINRTGLTILLVEQNVRQALRIAQHGYVLENGKIVLADSGVNLLHNPKVLEAYL 247 Query: 242 GG 243 GG Sbjct: 248 GG 249 >gb|EGW60812.1| ABC transporter related protein [Dechlorosoma suillum PS] Length = 237 Score = 319 bits (817), Expect = 3e-85, Method: Composition-based stats. Identities = 174/234 (74%), Positives = 203/234 (86%) Query: 10 ILQVEDLAVAYGHIEAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQRGRVLL 69 +L+V DLAVAYGHIEAVKG+ LNEGEITALVGANGAGKST+LLA+SGL+K RG++ Sbjct: 4 LLRVHDLAVAYGHIEAVKGLDFHLNEGEITALVGANGAGKSTTLLALSGLIKPTRGKIEF 63 Query: 70 NGQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLALGAYTRKDKEGVARDLEWVYSL 129 G+D+ ++ H+IVE G+VQVAEGRA LTTLTVEENL LGAYTR+DKEG+ +E VY L Sbjct: 64 QGEDISRLPAHQIVERGLVQVAEGRAILTTLTVEENLQLGAYTRQDKEGIPASMEEVYQL 123 Query: 130 FPVLKNRAAGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFRIVQEI 189 FP LK R+ AGNLSGGEQQMLAIGRALMAKPK+LLLDEPSMGLAP+++QEIFRI+ EI Sbjct: 124 FPRLKERSQQFAGNLSGGEQQMLAIGRALMAKPKLLLLDEPSMGLAPIVVQEIFRILVEI 183 Query: 190 NKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLGG 243 N+ G+T+LLVEQNVRQAL+IA+ GYV+ETGKIVL DSGANLL NPKV EAYLGG Sbjct: 184 NRRGLTILLVEQNVRQALKIAKHGYVIETGKIVLADSGANLLANPKVEEAYLGG 237 >emb|CBJ39677.1| Leucine/isoleucine/valine transporter subunit ; ATP-binding component of ABC superfamily [Ralstonia solanacearum CMR15] Length = 241 Score = 304 bits (778), Expect = 8e-81, Method: Composition-based stats. Identities = 169/238 (71%), Positives = 201/238 (84%), Gaps = 4/238 (1%) Query: 10 ILQVEDLAVAYGHIEAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVK----AQRG 65 +L+V+ L V+YGHI AVKGI +LN GEIT+LVGANGAGKST+LLA+SGL+ A RG Sbjct: 4 LLEVKGLEVSYGHIAAVKGIDFALNAGEITSLVGANGAGKSTTLLALSGLIPKSQGAVRG 63 Query: 66 RVLLNGQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLALGAYTRKDKEGVARDLEW 125 ++L G D+ Q S H+ VE G+VQVAEGRATLTT+TV ENL LGAYTRKD+ +A DLE Sbjct: 64 QILFEGADVTQWSAHKRVERGIVQVAEGRATLTTMTVRENLELGAYTRKDRSQIASDLER 123 Query: 126 VYSLFPVLKNRAAGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFRI 185 V+ LFP LK R G+AGNLSGGEQQMLAIGRALMA+P+VLLLDEPSMGLAP+I+QEIFRI Sbjct: 124 VFHLFPRLKERIDGMAGNLSGGEQQMLAIGRALMARPRVLLLDEPSMGLAPIIVQEIFRI 183 Query: 186 VQEINKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLGG 243 ++ IN G+T+ LVEQNVRQAL+IAQRGYVLETG+IVL DSG +LLGNP+V+EAYLGG Sbjct: 184 LRTINAEGLTIFLVEQNVRQALKIAQRGYVLETGQIVLADSGQSLLGNPRVLEAYLGG 241 >ref|YP_001892340.1| ABC transporter [Ralstonia pickettii 12J] ref|YP_002983839.1| ABC transporter [Ralstonia pickettii 12D] gb|ACD28913.1| ABC transporter related [Ralstonia pickettii 12J] gb|ACS65167.1| ABC transporter related [Ralstonia pickettii 12D] Length = 241 Score = 303 bits (777), Expect = 1e-80, Method: Composition-based stats. Identities = 169/238 (71%), Positives = 201/238 (84%), Gaps = 4/238 (1%) Query: 10 ILQVEDLAVAYGHIEAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLV-KAQ---RG 65 +L+V+ L V+YGHI AVKGI +L GEIT+LVGANGAGKST+LLA+SGL+ K+Q RG Sbjct: 4 LLEVKGLQVSYGHIAAVKGIDFALKAGEITSLVGANGAGKSTTLLALSGLIPKSQGDVRG 63 Query: 66 RVLLNGQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLALGAYTRKDKEGVARDLEW 125 ++L G D+ Q S H+ VE G+VQVAEGRATLTT+TV ENL LGAYTRKD+ +A DLE Sbjct: 64 QILFEGDDVSQWSAHKRVERGIVQVAEGRATLTTMTVRENLELGAYTRKDRSQIASDLER 123 Query: 126 VYSLFPVLKNRAAGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFRI 185 V+ LFP LK R G+AGNLSGGEQQMLAIGRALMA+P+VLLLDEPSMGLAP+I+QEIFRI Sbjct: 124 VFHLFPRLKERIDGMAGNLSGGEQQMLAIGRALMARPRVLLLDEPSMGLAPIIVQEIFRI 183 Query: 186 VQEINKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLGG 243 ++ IN G+T+ LVEQNVRQAL+IAQ GYVLETG+IVL DSG NLLGNP+V+EAYLGG Sbjct: 184 LRTINAEGLTIFLVEQNVRQALKIAQHGYVLETGQIVLADSGRNLLGNPRVLEAYLGG 241